Wall clock time and date at job start Tue Mar 31 2020 09:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46652 * 2 1 4 4 C 1.34814 * 126.59522 * 124.99596 * 3 2 1 5 5 C 1.36595 * 106.84125 * 179.97438 * 4 3 2 6 6 C 1.47528 * 125.77369 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00265 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00106 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.68559 * 36.53095 * 9 8 6 11 11 C 1.54857 * 110.62430 * 273.54522 * 9 8 6 12 12 C 1.55841 * 103.44584 * 241.51241 * 11 9 8 13 13 H 1.08995 * 115.56485 * 158.81503 * 12 11 9 14 14 C 1.55848 * 105.06329 * 288.17727 * 12 11 9 15 15 C 1.54857 * 103.44735 * 71.82383 * 14 12 11 16 16 C 1.55845 * 110.62436 * 159.52059 * 9 8 6 17 17 H 1.08990 * 115.56380 * 319.67284 * 16 9 8 18 18 N 1.50235 * 101.05038 * 85.55287 * 16 9 8 19 19 C 1.36939 * 130.83995 * 233.93311 * 18 16 9 20 20 H 1.08002 * 119.99732 * 0.02562 * 19 18 16 21 21 C 1.38804 * 120.00527 * 180.02562 * 19 18 16 22 22 N 1.31625 * 120.00010 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00260 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46855 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46835 * 120.00344 * 23 21 19 26 26 H 1.48505 * 109.46938 * 240.00096 * 23 21 19 27 27 N 1.34402 * 108.45887 * 0.24479 * 5 4 3 28 28 N 1.28761 * 109.51958 * 359.58531 * 27 5 4 29 29 H 1.08997 * 109.47672 * 299.99633 * 1 2 3 30 30 H 1.08996 * 109.47422 * 60.00669 * 1 2 3 31 31 H 1.09009 * 109.46748 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47612 * 239.99813 * 2 1 3 33 33 H 1.09003 * 109.47224 * 119.99632 * 2 1 3 34 34 H 1.07996 * 126.58291 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99423 * 0.02562 * 8 6 5 36 36 H 1.09004 * 110.62191 * 0.02562 * 11 9 8 37 37 H 1.08997 * 110.62718 * 122.85832 * 11 9 8 38 38 H 1.09002 * 110.62792 * 190.31724 * 14 12 11 39 39 H 1.09002 * 110.62424 * 313.33472 * 14 12 11 40 40 H 1.09000 * 110.62212 * 241.51112 * 15 14 12 41 41 H 1.08993 * 110.76246 * 118.55546 * 15 14 12 42 42 H 0.96996 * 119.99927 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8713 1.9322 0.8867 5 6 3.0506 3.2323 0.5081 6 6 3.9072 4.2195 1.1924 7 8 4.5307 3.8985 2.1856 8 7 3.9985 5.4772 0.7165 9 6 4.8496 6.4573 1.3957 10 1 5.7527 5.9827 1.7794 11 6 4.0724 7.1554 2.5388 12 6 4.0703 8.6544 2.1128 13 1 3.2925 9.2705 2.5639 14 6 5.5369 9.1375 2.3240 15 6 6.3141 8.4394 1.1809 16 6 5.2112 7.6297 0.4347 17 1 5.4382 7.3432 -0.5921 18 7 4.0213 8.5286 0.6165 19 6 3.1581 9.0679 -0.2996 20 1 3.2870 8.8588 -1.3513 21 6 2.1174 9.8831 0.1234 22 7 1.9605 10.1383 1.4051 23 14 0.9403 10.6193 -1.1264 24 1 1.3308 10.1829 -2.4910 25 1 -0.4414 10.1587 -0.8362 26 1 0.9954 12.1011 -1.0453 27 7 2.3099 3.4619 -0.5896 28 7 1.6885 2.3844 -0.9225 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.3265 1.4398 1.7333 35 1 3.5007 5.7333 -0.0757 36 1 3.0539 6.7719 2.6006 37 1 4.5886 7.0245 3.4898 38 1 5.6020 10.2212 2.2267 39 1 5.9112 8.8150 3.2956 40 1 7.0738 7.7708 1.5857 41 1 6.7665 9.1750 0.5159 42 1 1.2334 10.7084 1.7006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098120065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:54 Heat of formation + Delta-G solvation = 83.022654 kcal Electronic energy + Delta-G solvation = -25262.311470 eV Core-core repulsion = 21665.970430 eV Total energy + Delta-G solvation = -3596.341039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.21246 -41.16872 -39.65175 -36.36186 -35.26429 -34.38150 -32.34618 -31.47331 -30.94850 -30.30894 -29.18570 -26.15942 -25.53763 -24.81962 -22.72761 -22.59075 -21.51531 -21.06462 -20.29397 -18.95560 -18.82699 -17.36692 -17.23682 -17.09317 -16.75312 -15.95622 -15.80837 -15.65339 -15.50921 -15.12006 -14.87127 -14.44681 -13.80368 -13.70202 -13.63700 -13.36173 -13.06193 -12.89246 -12.88254 -12.77095 -12.65669 -12.56676 -12.06793 -12.03281 -11.91857 -11.86340 -11.69076 -11.33938 -11.31659 -10.99142 -10.92685 -10.72026 -10.38151 -9.89114 -8.84536 -7.74623 -5.13562 0.17238 0.63989 1.15857 1.47575 1.48965 1.57697 2.21826 2.31769 2.51369 3.22618 3.38698 3.43446 3.48080 3.84086 3.97393 3.99793 4.04656 4.11249 4.28995 4.29950 4.34729 4.49499 4.50866 4.60898 4.68191 4.73315 4.76050 4.86525 4.92776 4.95428 5.12564 5.20620 5.22247 5.22809 5.41539 5.51597 5.54308 5.61467 5.74278 5.93030 6.30483 6.53779 6.93095 7.08648 7.19874 7.74544 8.60038 9.32814 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.004218 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.784579 B = 6636.606345 C = 8034.410087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.349 5.349 4 C 0.112 3.888 5 C -0.128 4.128 6 C 0.600 3.400 7 O -0.570 6.570 8 N -0.694 5.694 9 C 0.139 3.861 10 H 0.096 0.904 11 C -0.132 4.132 12 C 0.138 3.862 13 H 0.115 0.885 14 C -0.129 4.129 15 C -0.116 4.116 16 C 0.124 3.876 17 H 0.099 0.901 18 N -0.612 5.612 19 C -0.211 4.211 20 H 0.081 0.919 21 C -0.067 4.067 22 N -0.947 5.947 23 Si 0.971 3.029 24 H -0.268 1.268 25 H -0.300 1.300 26 H -0.295 1.295 27 N -0.233 5.233 28 N -0.091 5.091 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.145 0.855 34 H 0.242 0.758 35 H 0.405 0.595 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 -21.728 0.164 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.134 5.134 4 C -0.047 4.047 5 C -0.268 4.268 6 C 0.386 3.614 7 O -0.450 6.450 8 N -0.341 5.341 9 C 0.033 3.967 10 H 0.114 0.886 11 C -0.172 4.172 12 C 0.032 3.968 13 H 0.132 0.868 14 C -0.169 4.169 15 C -0.155 4.155 16 C 0.017 3.983 17 H 0.117 0.883 18 N -0.333 5.333 19 C -0.340 4.340 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.801 3.199 24 H -0.193 1.193 25 H -0.228 1.228 26 H -0.222 1.222 27 N -0.106 5.106 28 N -0.072 5.072 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.258 0.742 35 H 0.240 0.760 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.813 -21.483 -0.538 21.673 hybrid contribution -0.819 0.694 -0.066 1.075 sum 1.994 -20.789 -0.604 20.893 Atomic orbital electron populations 1.22092 0.92907 1.04981 1.02446 1.22597 0.96787 0.73879 1.07888 1.50998 1.30564 1.13229 1.18613 1.23858 0.92024 0.92757 0.96026 1.21584 1.08748 0.96356 1.00117 1.17012 0.80085 0.81519 0.82831 1.90726 1.47749 1.80001 1.26520 1.45869 1.47230 1.09757 1.31257 1.22569 0.92576 0.88080 0.93457 0.88610 1.23330 0.98134 0.98234 0.97534 1.23613 0.95871 0.93426 0.83929 0.86798 1.22937 0.96948 0.98808 0.98168 1.22808 0.96610 0.98901 0.97217 1.23401 0.88514 0.89552 0.96875 0.88333 1.46740 1.29474 1.54223 1.02867 1.19362 1.04366 1.21452 0.88796 0.90080 1.25377 1.00969 1.01994 0.97601 1.69720 1.33451 1.42662 1.13915 0.85099 0.78497 0.77417 0.78905 1.19277 1.22787 1.22243 1.74685 1.05429 1.19155 1.11364 1.81867 1.21175 0.90853 1.13286 0.92881 0.92910 0.86944 0.86571 0.83759 0.74222 0.75970 0.95302 0.90857 0.94321 0.90660 0.89512 0.92178 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.12 71.98 0.73 -0.75 16 2 C 0.11 0.82 7.26 86.38 0.63 1.44 16 3 N -0.35 -6.68 3.69 -347.10 -1.28 -7.96 16 4 C 0.11 2.33 11.27 83.85 0.95 3.28 16 5 C -0.13 -3.94 6.99 40.82 0.29 -3.66 16 6 C 0.60 21.32 7.81 86.69 0.68 22.00 16 7 O -0.57 -21.46 16.59 -3.99 -0.07 -21.53 16 8 N -0.69 -26.10 5.09 -438.07 -2.23 -28.33 16 9 C 0.14 5.22 2.73 46.61 0.13 5.35 16 10 H 0.10 3.32 7.36 -2.39 -0.02 3.31 16 11 C -0.13 -5.53 6.22 32.21 0.20 -5.33 16 12 C 0.14 6.50 4.72 46.23 0.22 6.72 16 13 H 0.11 6.35 5.52 -2.39 -0.01 6.33 16 14 C -0.13 -5.01 6.44 32.21 0.21 -4.81 16 15 C -0.12 -3.95 6.44 32.21 0.21 -3.75 16 16 C 0.12 4.80 5.04 46.23 0.23 5.04 16 17 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 18 N -0.61 -30.01 2.99 -615.27 -1.84 -31.85 16 19 C -0.21 -11.54 10.59 84.03 0.89 -10.65 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.95 -56.42 10.47 21.65 0.23 -56.19 16 23 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 27 N -0.23 -7.92 12.04 -49.99 -0.60 -8.52 16 28 N -0.09 -2.65 13.65 37.02 0.51 -2.14 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 32 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.14 0.02 8.08 -2.39 -0.02 0.00 16 34 H 0.24 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.41 16.14 8.31 -92.71 -0.77 15.37 16 36 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 37 H 0.07 2.74 7.82 -2.39 -0.02 2.73 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.49 7.82 -2.39 -0.02 2.48 16 40 H 0.09 2.40 7.82 -2.39 -0.02 2.39 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -74.13 348.41 2.83 -71.30 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.27 Total: 24.94 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.81 Total: 11.55 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -5.22 Total: -134.99 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.13 2.83 -71.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098120065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.326 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds