Wall clock time and date at job start Tue Mar 31 2020 08:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99766 * 2 1 4 4 C 1.53004 * 109.47208 * 125.00048 * 3 2 1 5 5 C 1.50700 * 109.47208 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 H 1.08999 * 110.64763 * 34.29805 * 8 7 5 10 10 C 1.54327 * 110.72198 * 271.15203 * 8 7 5 11 11 N 1.47015 * 107.27178 * 219.44621 * 10 8 7 12 12 C 1.36939 * 125.64968 * 178.97794 * 11 10 8 13 13 H 1.07996 * 120.00328 * 179.97438 * 12 11 10 14 14 C 1.38822 * 119.99547 * 359.97155 * 12 11 10 15 15 N 1.31613 * 119.99943 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99662 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47198 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46820 * 120.00325 * 16 14 12 19 19 H 1.48498 * 109.46938 * 240.00313 * 16 14 12 20 20 C 1.47424 * 108.70682 * 358.93979 * 11 10 8 21 21 C 1.55122 * 104.94158 * 24.00238 * 20 11 10 22 22 H 1.08994 * 111.16659 * 205.13001 * 21 20 11 23 23 N 1.46502 * 110.93489 * 81.21307 * 21 20 11 24 24 C 1.35310 * 125.87238 * 332.96236 * 23 21 20 25 25 C 1.35344 * 106.17863 * 179.97438 * 24 23 21 26 26 N 1.33765 * 106.49918 * 359.97438 * 25 24 23 27 27 N 1.28633 * 108.88299 * 359.73711 * 26 25 24 28 28 H 1.07992 * 120.00250 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99698 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00463 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47500 * 5.00052 * 3 2 1 32 32 H 1.08998 * 109.47585 * 245.00047 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99906 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00451 * 4 3 2 35 35 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 36 36 H 1.09000 * 109.87762 * 338.86485 * 10 8 7 37 37 H 1.08996 * 109.87888 * 100.02812 * 10 8 7 38 38 H 0.96996 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.09003 * 110.36642 * 142.96534 * 20 11 10 40 40 H 1.08999 * 110.36747 * 265.28749 * 20 11 10 41 41 H 1.08005 * 126.90744 * 0.02562 * 24 23 21 42 42 H 1.08011 * 126.75198 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6386 1.1820 6 8 3.5694 3.4649 0.3216 7 7 4.7086 2.8851 2.1350 8 6 5.4449 4.1516 2.1318 9 1 4.8120 4.9632 1.7729 10 6 6.7241 4.0375 1.2760 11 7 7.7858 4.7735 1.9777 12 6 9.0831 4.8972 1.5572 13 1 9.7903 5.4619 2.1464 14 6 9.4892 4.2965 0.3734 15 7 8.6273 3.6086 -0.3449 16 14 11.2591 4.4645 -0.1999 17 1 12.0212 5.2808 0.7790 18 1 11.8750 3.1174 -0.3063 19 1 11.2883 5.1285 -1.5279 20 6 7.2223 5.3573 3.2086 21 6 5.9957 4.4699 3.5469 22 1 5.2628 5.0201 4.1369 23 7 6.4097 3.2456 4.2368 24 6 7.6126 2.6373 4.1192 25 6 7.5657 1.5501 4.9240 26 7 6.3526 1.5468 5.4876 27 7 5.6941 2.5675 5.0644 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 3.7400 0.5066 1.0920 34 1 2.4772 1.2356 2.1130 35 1 4.8836 2.2240 2.8229 36 1 7.0068 2.9901 1.1700 37 1 6.5537 4.4788 0.2941 38 1 8.9109 3.1892 -1.1723 39 1 7.9537 5.3189 4.0159 40 1 6.9059 6.3850 3.0307 41 1 8.4434 2.9558 3.5069 42 1 8.3532 0.8277 5.0809 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128802879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:15 Heat of formation + Delta-G solvation = 97.745146 kcal Electronic energy + Delta-G solvation = -25720.891160 eV Core-core repulsion = 22125.188536 eV Total energy + Delta-G solvation = -3595.702624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.25308 -41.07692 -39.40066 -36.35395 -35.77598 -34.82829 -33.45483 -31.94912 -31.77478 -30.36382 -29.12661 -26.78345 -25.34563 -24.00641 -23.49320 -22.31330 -21.49891 -21.30463 -20.67262 -19.25826 -18.56176 -18.29440 -17.26981 -16.87816 -16.76747 -16.32394 -15.97023 -15.75754 -15.60828 -15.27804 -14.97376 -14.62196 -14.45145 -14.02259 -13.88893 -13.55223 -13.34162 -13.15840 -12.99592 -12.87521 -12.72739 -12.54087 -12.23196 -12.07085 -12.03611 -11.91333 -11.88441 -11.81301 -11.14686 -11.00945 -10.76789 -10.25502 -10.23412 -10.16671 -9.01045 -7.87506 -5.26595 0.66513 1.32406 1.39875 1.48244 1.50279 1.56073 1.59055 1.65697 2.08795 2.47338 3.15017 3.33855 3.40923 3.51750 3.66699 3.76388 3.92434 3.94692 4.12123 4.20277 4.23990 4.38574 4.43726 4.43977 4.47146 4.60949 4.68381 4.80511 4.85243 4.88727 5.05220 5.11785 5.20194 5.30992 5.42829 5.50451 5.68418 5.73721 5.74921 5.89910 6.08824 6.36206 7.00861 7.13503 7.55292 7.68478 8.28063 9.21396 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.004874 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.006579 B = 5743.600473 C = 7096.453133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.509 3.491 6 O -0.577 6.577 7 N -0.713 5.713 8 C 0.120 3.880 9 H 0.111 0.889 10 C 0.190 3.810 11 N -0.615 5.615 12 C -0.236 4.236 13 H 0.096 0.904 14 C -0.055 4.055 15 N -0.947 5.947 16 Si 0.972 3.028 17 H -0.260 1.260 18 H -0.295 1.295 19 H -0.302 1.302 20 C 0.127 3.873 21 C 0.127 3.873 22 H 0.157 0.843 23 N -0.274 5.274 24 C -0.019 4.019 25 C -0.064 4.064 26 N -0.291 5.291 27 N -0.111 5.111 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.402 0.598 36 H 0.022 0.978 37 H 0.006 0.994 38 H 0.244 0.756 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.186 0.814 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 -4.223 7.825 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.180 4.180 3 C -0.113 4.113 4 C -0.166 4.166 5 C 0.298 3.702 6 O -0.456 6.456 7 N -0.364 5.364 8 C 0.012 3.988 9 H 0.129 0.871 10 C 0.063 3.937 11 N -0.342 5.342 12 C -0.364 4.364 13 H 0.113 0.887 14 C -0.249 4.249 15 N -0.595 5.595 16 Si 0.802 3.198 17 H -0.184 1.184 18 H -0.222 1.222 19 H -0.230 1.230 20 C 0.001 3.999 21 C 0.024 3.976 22 H 0.175 0.825 23 N -0.067 5.067 24 C -0.170 4.170 25 C -0.221 4.221 26 N -0.157 5.157 27 N -0.090 5.090 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.238 0.762 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.203 0.797 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -10.608 -3.780 7.783 13.689 hybrid contribution 2.286 -0.012 -1.355 2.657 sum -8.323 -3.791 6.428 11.179 Atomic orbital electron populations 1.24049 0.95687 1.02714 0.99961 1.22953 0.96410 0.97761 1.00918 1.20428 0.97433 0.96347 0.97095 1.21643 0.99073 0.93550 1.02359 1.21404 0.79052 0.89861 0.79891 1.90688 1.67354 1.49726 1.37845 1.45874 1.39781 1.19584 1.31184 1.22541 0.94052 0.87983 0.94225 0.87127 1.21128 0.84656 0.95470 0.92402 1.44610 1.06710 1.60471 1.22422 1.19431 0.85136 1.27567 1.04296 0.88670 1.25562 1.01354 1.00118 0.97883 1.70183 1.34418 1.39115 1.15832 0.85100 0.80153 0.76919 0.77662 1.18427 1.22238 1.22957 1.22173 0.92217 0.95609 0.89911 1.23410 1.00088 0.82199 0.91952 0.82540 1.47313 1.10336 1.20314 1.28750 1.24054 0.92167 0.96642 1.04160 1.23991 0.97565 1.00658 0.99837 1.75015 1.05554 1.13283 1.21896 1.78196 1.20634 1.02844 1.07312 0.88549 0.86717 0.86090 0.91565 0.92117 0.87659 0.86532 0.76199 0.95953 0.97621 0.94626 0.90981 0.90627 0.79658 0.77046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.16 -3.08 9.52 25.65 0.24 -2.84 16 3 C -0.08 -1.82 4.95 29.85 0.15 -1.67 16 4 C -0.13 -3.06 5.68 29.85 0.17 -2.89 16 5 C 0.51 16.98 7.83 87.66 0.69 17.66 16 6 O -0.58 -23.82 15.67 -3.04 -0.05 -23.87 16 7 N -0.71 -23.16 5.07 -436.91 -2.22 -25.38 16 8 C 0.12 4.16 3.14 46.18 0.14 4.30 16 9 H 0.11 3.89 7.62 -2.39 -0.02 3.87 16 10 C 0.19 8.63 4.76 86.73 0.41 9.05 16 11 N -0.61 -26.56 2.24 -691.57 -1.55 -28.11 16 12 C -0.24 -11.43 10.08 84.04 0.85 -10.58 16 13 H 0.10 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.06 -2.88 5.49 84.87 0.47 -2.41 16 15 N -0.95 -54.04 10.31 21.65 0.22 -53.82 16 16 Si 0.97 42.68 29.55 68.60 2.03 44.71 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 20 C 0.13 4.03 6.20 86.93 0.54 4.57 16 21 C 0.13 3.62 4.08 46.46 0.19 3.81 16 22 H 0.16 3.43 8.14 -2.39 -0.02 3.41 16 23 N -0.27 -8.29 2.43 -320.24 -0.78 -9.07 16 24 C -0.02 -0.59 10.02 83.49 0.84 0.25 16 25 C -0.06 -1.84 12.05 83.73 1.01 -0.83 16 26 N -0.29 -9.22 12.41 -58.26 -0.72 -9.94 16 27 N -0.11 -3.46 12.25 37.02 0.45 -3.01 16 28 H 0.10 1.58 7.84 -2.91 -0.02 1.56 16 29 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.07 1.68 7.75 -2.39 -0.02 1.66 16 32 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.11 2.32 8.14 -2.38 -0.02 2.31 16 34 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.40 12.41 6.77 -92.71 -0.63 11.78 16 36 H 0.02 1.16 7.27 -2.39 -0.02 1.15 16 37 H 0.01 0.31 7.50 -2.39 -0.02 0.29 16 38 H 0.24 13.91 8.31 -92.71 -0.77 13.13 16 39 H 0.07 2.15 7.86 -2.39 -0.02 2.14 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.19 6.70 6.83 -2.91 -0.02 6.68 16 42 H 0.21 4.64 8.06 -2.90 -0.02 4.62 16 Total: -1.00 -65.57 349.81 4.45 -61.12 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.40 Total: 31.09 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.66 Total: 16.27 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -4.60 Total: -129.33 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -65.57 4.45 -61.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128802879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.868 kcal (2) G-P(sol) polarization free energy of solvation -65.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds