Wall clock time and date at job start Tue Mar 31 2020 08:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 C 1.53002 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46626 * 185.13950 * 4 3 2 6 6 C 1.46902 * 110.99755 * 160.33230 * 5 4 3 7 7 C 1.50700 * 109.47105 * 298.56996 * 6 5 4 8 8 H 1.08001 * 120.00331 * 354.82334 * 7 6 5 9 9 C 1.37885 * 119.99929 * 174.81513 * 7 6 5 10 10 N 1.31509 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99792 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46744 * 90.00691 * 11 9 7 13 13 H 1.48492 * 109.46911 * 210.00091 * 11 9 7 14 14 H 1.48496 * 109.47426 * 330.00562 * 11 9 7 15 15 C 1.46897 * 111.00099 * 284.28503 * 5 4 3 16 16 C 1.50699 * 109.46891 * 170.00097 * 15 5 4 17 17 C 1.34004 * 126.90593 * 260.07923 * 16 15 5 18 18 O 1.34436 * 110.15095 * 180.30739 * 17 16 15 19 19 C 1.34890 * 110.89166 * 359.75434 * 18 17 16 20 20 C 1.38913 * 133.38363 * 179.97438 * 19 18 17 21 21 C 1.37809 * 119.99359 * 180.02562 * 20 19 18 22 22 C 1.38954 * 120.66654 * 0.04859 * 21 20 19 23 23 F 1.35100 * 119.88552 * 179.97438 * 22 21 20 24 24 C 1.37909 * 120.21990 * 359.97311 * 22 21 20 25 25 C 1.39433 * 119.58671 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47203 * 299.99415 * 1 2 3 27 27 H 1.08998 * 109.47624 * 60.00100 * 1 2 3 28 28 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47203 * 240.00585 * 2 1 3 30 30 H 1.08998 * 109.47624 * 119.99900 * 2 1 3 31 31 H 1.08996 * 109.47005 * 60.00019 * 3 2 1 32 32 H 1.08998 * 109.46945 * 300.00316 * 3 2 1 33 33 H 1.08991 * 109.47481 * 65.14242 * 4 3 2 34 34 H 1.08998 * 109.47213 * 305.13931 * 4 3 2 35 35 H 1.08995 * 109.47360 * 58.57351 * 6 5 4 36 36 H 1.09001 * 109.46889 * 178.57755 * 6 5 4 37 37 H 0.97001 * 120.00341 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46776 * 50.00294 * 15 5 4 39 39 H 1.08992 * 109.47307 * 290.00000 * 15 5 4 40 40 H 1.08001 * 124.92453 * 0.06254 * 17 16 15 41 41 H 1.07998 * 120.00113 * 0.03447 * 20 19 18 42 42 H 1.07999 * 119.66153 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.20896 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8221 0.1234 6 6 5.4528 2.8463 0.5885 7 6 5.5385 2.2094 1.9516 8 1 4.6376 1.9008 2.4612 9 6 6.7672 2.0204 2.5482 10 7 7.8641 2.3964 1.9279 11 14 6.8734 1.2303 4.2375 12 1 6.9972 -0.2421 4.0884 13 1 8.0615 1.7565 4.9562 14 1 5.6461 1.5480 5.0108 15 6 3.9154 3.5480 -1.1455 16 6 4.1930 5.0120 -0.9209 17 6 3.2880 5.9890 -0.7712 18 8 3.9061 7.1700 -0.5968 19 6 5.2464 7.0195 -0.6190 20 6 6.3083 7.9054 -0.4887 21 6 7.6044 7.4422 -0.5575 22 6 7.8647 6.0920 -0.7578 23 9 9.1415 5.6551 -0.8232 24 6 6.8242 5.1966 -0.8900 25 6 5.5090 5.6546 -0.8220 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 1.0108 -0.9332 34 1 3.9336 0.8510 0.8395 35 1 6.0791 2.2929 -0.1112 36 1 5.7982 3.8784 0.6474 37 1 8.7285 2.2638 2.3477 38 1 2.8999 3.4242 -1.5215 39 1 4.6232 3.1515 -1.8733 40 1 2.2174 5.8485 -0.7920 41 1 6.1183 8.9571 -0.3333 42 1 8.4260 8.1356 -0.4550 43 1 7.0268 4.1472 -1.0453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141853030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:34 Heat of formation + Delta-G solvation = -24.575655 kcal Electronic energy + Delta-G solvation = -25240.165847 eV Core-core repulsion = 21586.946282 eV Total energy + Delta-G solvation = -3653.219565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.39516 -42.15432 -37.46220 -37.16226 -34.53447 -32.94837 -32.13000 -29.99114 -29.21809 -28.62088 -27.12640 -24.66270 -23.23314 -22.98713 -22.00899 -20.96124 -20.47808 -19.18797 -17.60788 -17.02370 -16.53721 -16.14328 -15.87762 -15.14389 -14.98556 -14.79443 -14.72822 -14.29265 -13.96791 -13.80677 -13.61036 -13.29691 -13.02533 -12.61215 -12.25988 -12.21360 -12.14315 -11.94173 -11.61694 -11.50420 -11.31085 -10.90046 -10.81791 -10.72153 -10.68573 -10.51018 -10.26403 -9.98311 -9.91523 -9.48338 -9.12904 -8.42612 -8.13976 -7.84647 -7.25114 -6.00710 -4.01173 1.11908 1.49883 2.61902 3.04941 3.31575 3.38575 3.42382 3.84668 4.44127 4.49686 4.76151 4.83237 4.95351 5.17284 5.22464 5.28766 5.34925 5.39614 5.40659 5.50151 5.66358 5.72941 5.81188 5.90500 5.92459 6.01536 6.06339 6.11412 6.15748 6.21515 6.34653 6.37827 6.44553 6.48101 6.49644 6.68270 6.74098 6.86264 6.96663 7.33445 7.38591 7.42726 7.81163 8.11017 8.20210 8.55879 9.05502 9.62123 11.09719 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.005962 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.264219 B = 4695.480307 C = 6936.999823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C 0.059 3.941 5 N -0.533 5.533 6 C 0.184 3.816 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.120 3.880 16 C -0.146 4.146 17 C 0.010 3.990 18 O -0.196 6.196 19 C 0.037 3.963 20 C -0.087 4.087 21 C -0.131 4.131 22 C 0.082 3.918 23 F -0.136 7.136 24 C -0.079 4.079 25 C -0.089 4.089 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.018 0.982 34 H 0.090 0.910 35 H -0.011 1.011 36 H 0.044 0.956 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.206 0.794 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 5.848 -7.921 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.257 5.257 6 C 0.060 3.940 7 C -0.549 4.549 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.008 4.008 16 C -0.147 4.147 17 C -0.055 4.055 18 O -0.098 6.098 19 C -0.010 4.010 20 C -0.106 4.106 21 C -0.149 4.149 22 C 0.063 3.937 23 F -0.115 7.115 24 C -0.098 4.098 25 C -0.091 4.091 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.108 0.892 35 H 0.007 0.993 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.223 0.777 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.425 6.325 -7.509 12.937 hybrid contribution 0.990 -1.158 0.463 1.592 sum -7.435 5.167 -7.046 11.473 Atomic orbital electron populations 1.21756 0.96422 1.00950 1.01517 1.21502 0.95189 0.97711 1.01863 1.21618 0.96322 0.95464 1.01651 1.22056 0.93493 0.90640 1.00666 1.62196 1.25793 1.13237 1.24508 1.20007 0.81232 0.97921 0.94868 1.21147 0.92435 1.39345 1.01948 0.91969 1.24954 0.95751 0.95918 0.97767 1.69936 0.97715 1.47401 1.38138 0.86583 0.77608 0.79342 0.84417 1.20791 1.21283 1.19843 1.20380 1.00005 0.87839 0.92592 1.21018 0.90269 0.96594 1.06853 1.23627 0.98124 0.81389 1.02406 1.83974 1.16800 1.33083 1.75926 1.19541 0.82549 0.94639 1.04265 1.19535 0.88273 0.98719 1.04036 1.20774 0.96685 0.94151 1.03322 1.17324 0.79003 0.92348 1.05026 1.91501 1.35748 1.90248 1.94005 1.20651 0.89713 1.00651 0.98743 1.19521 0.93504 0.92660 1.03373 0.92835 0.93139 0.93304 0.92548 0.91908 0.91410 0.93192 0.96420 0.89174 0.99321 0.93822 0.92943 0.90806 0.94829 0.77731 0.84597 0.84060 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.15 0.37 -1.24 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.67 5.25 -26.73 -0.14 -1.81 16 4 C 0.06 1.11 4.82 -3.82 -0.02 1.09 16 5 N -0.53 -11.07 4.45 -237.52 -1.06 -12.13 16 6 C 0.18 4.67 3.68 -4.98 -0.02 4.66 16 7 C -0.51 -14.16 8.07 -34.44 -0.28 -14.44 16 8 H 0.06 1.72 7.20 -52.49 -0.38 1.34 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.12 2.09 5.34 -4.98 -0.03 2.06 16 16 C -0.15 -2.54 5.40 -102.66 -0.55 -3.09 16 17 C 0.01 0.15 11.89 29.24 0.35 0.49 16 18 O -0.20 -3.12 10.58 3.71 0.04 -3.08 16 19 C 0.04 0.63 7.41 -38.49 -0.29 0.35 16 20 C -0.09 -1.26 10.06 -39.49 -0.40 -1.66 16 21 C -0.13 -1.95 9.99 -39.47 -0.39 -2.35 16 22 C 0.08 1.51 7.29 -39.44 -0.29 1.22 16 23 F -0.14 -2.62 17.26 2.25 0.04 -2.58 16 24 C -0.08 -1.56 8.36 -39.26 -0.33 -1.89 16 25 C -0.09 -1.68 5.30 -105.16 -0.56 -2.24 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 33 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 34 H 0.09 1.91 6.31 -51.93 -0.33 1.58 16 35 H -0.01 -0.30 7.93 -51.93 -0.41 -0.71 16 36 H 0.04 1.17 4.38 -51.93 -0.23 0.94 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 39 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 40 H 0.21 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.15 3.14 7.02 -52.49 -0.37 2.77 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -30.80 354.56 -8.95 -39.75 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.20 Total: 0.60 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.83 Total: -19.08 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.32 Total: -37.69 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.80 -8.95 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141853030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds