Wall clock time and date at job start Tue Mar 31 2020 08:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46810 * 2 1 4 4 C 1.53002 * 109.46726 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46626 * 185.13950 * 4 3 2 6 6 C 1.46902 * 110.99755 * 160.33230 * 5 4 3 7 7 C 1.50700 * 109.47105 * 298.56996 * 6 5 4 8 8 H 1.08001 * 120.00331 * 354.82334 * 7 6 5 9 9 C 1.37885 * 119.99929 * 174.81513 * 7 6 5 10 10 N 1.31509 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99792 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46744 * 90.00691 * 11 9 7 13 13 H 1.48492 * 109.46911 * 210.00091 * 11 9 7 14 14 H 1.48496 * 109.47426 * 330.00562 * 11 9 7 15 15 C 1.46897 * 111.00099 * 284.28503 * 5 4 3 16 16 C 1.50699 * 109.46891 * 170.00097 * 15 5 4 17 17 C 1.34004 * 126.90593 * 260.07923 * 16 15 5 18 18 O 1.34436 * 110.15095 * 180.30739 * 17 16 15 19 19 C 1.34890 * 110.89166 * 359.75434 * 18 17 16 20 20 C 1.38913 * 133.38363 * 179.97438 * 19 18 17 21 21 C 1.37809 * 119.99359 * 180.02562 * 20 19 18 22 22 C 1.38954 * 120.66654 * 0.04859 * 21 20 19 23 23 F 1.35100 * 119.88552 * 179.97438 * 22 21 20 24 24 C 1.37909 * 120.21990 * 359.97311 * 22 21 20 25 25 C 1.39433 * 119.58671 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47203 * 299.99415 * 1 2 3 27 27 H 1.08998 * 109.47624 * 60.00100 * 1 2 3 28 28 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47203 * 240.00585 * 2 1 3 30 30 H 1.08998 * 109.47624 * 119.99900 * 2 1 3 31 31 H 1.08996 * 109.47005 * 60.00019 * 3 2 1 32 32 H 1.08998 * 109.46945 * 300.00316 * 3 2 1 33 33 H 1.08991 * 109.47481 * 65.14242 * 4 3 2 34 34 H 1.08998 * 109.47213 * 305.13931 * 4 3 2 35 35 H 1.08995 * 109.47360 * 58.57351 * 6 5 4 36 36 H 1.09001 * 109.46889 * 178.57755 * 6 5 4 37 37 H 0.97001 * 120.00341 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46776 * 50.00294 * 15 5 4 39 39 H 1.08992 * 109.47307 * 290.00000 * 15 5 4 40 40 H 1.08001 * 124.92453 * 0.06254 * 17 16 15 41 41 H 1.07998 * 120.00113 * 0.03447 * 20 19 18 42 42 H 1.07999 * 119.66153 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.20896 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0595 2.8221 0.1234 6 6 5.4528 2.8463 0.5885 7 6 5.5385 2.2094 1.9516 8 1 4.6376 1.9008 2.4612 9 6 6.7672 2.0204 2.5482 10 7 7.8641 2.3964 1.9279 11 14 6.8734 1.2303 4.2375 12 1 6.9972 -0.2421 4.0884 13 1 8.0615 1.7565 4.9562 14 1 5.6461 1.5480 5.0108 15 6 3.9154 3.5480 -1.1455 16 6 4.1930 5.0120 -0.9209 17 6 3.2880 5.9890 -0.7712 18 8 3.9061 7.1700 -0.5968 19 6 5.2464 7.0195 -0.6190 20 6 6.3083 7.9054 -0.4887 21 6 7.6044 7.4422 -0.5575 22 6 7.8647 6.0920 -0.7578 23 9 9.1415 5.6551 -0.8232 24 6 6.8242 5.1966 -0.8900 25 6 5.5090 5.6546 -0.8220 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 1.0108 -0.9332 34 1 3.9336 0.8510 0.8395 35 1 6.0791 2.2929 -0.1112 36 1 5.7982 3.8784 0.6474 37 1 8.7285 2.2638 2.3477 38 1 2.8999 3.4242 -1.5215 39 1 4.6232 3.1515 -1.8733 40 1 2.2174 5.8485 -0.7920 41 1 6.1183 8.9571 -0.3333 42 1 8.4260 8.1356 -0.4550 43 1 7.0268 4.1472 -1.0453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141853030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:34 Heat of formation + Delta-G solvation = -42.169135 kcal Electronic energy + Delta-G solvation = -25240.928757 eV Core-core repulsion = 21586.946282 eV Total energy + Delta-G solvation = -3653.982476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88417 -43.42427 -38.98182 -38.50247 -35.74755 -34.84700 -33.65703 -31.37286 -30.54119 -30.06149 -28.80974 -26.22134 -24.69696 -24.45398 -23.33492 -22.40412 -21.74744 -20.64454 -18.96259 -18.58415 -18.31071 -17.55046 -17.21766 -16.72301 -16.45540 -16.32522 -16.11544 -15.82660 -15.53295 -15.13127 -15.09921 -14.48587 -14.28629 -14.08626 -13.74556 -13.69103 -13.60548 -13.27916 -13.09429 -12.97298 -12.84113 -12.61857 -12.60156 -12.10438 -12.01888 -11.85035 -11.81026 -11.48466 -11.30124 -11.13566 -10.93126 -10.58090 -9.47139 -9.19477 -8.96867 -8.18998 -6.27840 -0.15187 0.14150 1.34937 1.36248 1.37477 1.48450 1.83391 2.37933 2.50701 3.12918 3.17792 3.40019 3.51491 3.63541 3.88501 4.05649 4.12137 4.23906 4.30117 4.32243 4.37222 4.50113 4.53289 4.59914 4.63739 4.85253 4.87460 4.91517 5.02386 5.04904 5.07052 5.13092 5.18070 5.21320 5.24141 5.36699 5.38975 5.44890 5.54593 5.58231 5.61568 5.65587 6.08980 6.14354 6.36623 6.66772 6.88879 7.40312 8.90723 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.005962 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.264219 B = 4695.480307 C = 6936.999823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.098 4.098 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.205 3.795 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.927 5.927 11 Si 0.960 3.040 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.125 3.875 16 C -0.191 4.191 17 C 0.045 3.955 18 O -0.189 6.189 19 C 0.025 3.975 20 C -0.067 4.067 21 C -0.125 4.125 22 C 0.064 3.936 23 F -0.150 7.150 24 C -0.114 4.114 25 C -0.113 4.113 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.015 0.985 34 H 0.057 0.943 35 H -0.053 1.053 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.113 0.887 39 H 0.015 0.985 40 H 0.256 0.744 41 H 0.183 0.817 42 H 0.180 0.820 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 7.641 -7.466 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.136 4.136 4 C -0.068 4.068 5 N -0.260 5.260 6 C 0.079 3.921 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.567 5.567 11 Si 0.785 3.215 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.189 1.189 15 C -0.002 4.002 16 C -0.193 4.193 17 C -0.020 4.020 18 O -0.090 6.090 19 C -0.022 4.022 20 C -0.085 4.085 21 C -0.143 4.143 22 C 0.045 3.955 23 F -0.129 7.129 24 C -0.133 4.133 25 C -0.114 4.114 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.076 0.924 35 H -0.035 1.035 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.033 0.967 40 H 0.271 0.729 41 H 0.200 0.800 42 H 0.198 0.802 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.223 8.114 -7.065 15.547 hybrid contribution 1.821 -1.689 0.254 2.497 sum -9.402 6.425 -6.811 13.269 Atomic orbital electron populations 1.21709 0.94240 1.02007 1.02156 1.21491 0.97017 0.96118 1.01555 1.21502 0.92648 0.97143 1.02320 1.22083 0.96464 0.89194 0.99073 1.62177 1.22387 1.14584 1.26840 1.19585 0.83424 0.95931 0.93188 1.21480 0.92460 1.39297 1.02968 0.92193 1.25836 0.95380 0.96477 1.01750 1.70098 0.98156 1.48613 1.39827 0.85526 0.77773 0.78626 0.79605 1.19870 1.20967 1.18911 1.20414 1.01552 0.87783 0.90463 1.21152 0.90612 0.97080 1.10466 1.24457 0.99524 0.79948 0.98093 1.84007 1.16165 1.33409 1.75438 1.19888 0.83517 0.94109 1.04732 1.20091 0.87018 1.00481 1.00895 1.21158 0.98370 0.92703 1.02065 1.17738 0.78080 0.93966 1.05763 1.91454 1.36515 1.90675 1.94209 1.20461 0.91494 0.99184 1.02193 1.19806 0.93475 0.94416 1.03732 0.92773 0.91897 0.92121 0.92109 0.93141 0.92075 0.90945 0.96663 0.92444 1.03513 0.95375 0.93050 0.86917 0.96730 0.72864 0.79971 0.80248 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 71.98 0.71 -2.00 16 2 C -0.12 -3.01 5.93 30.59 0.18 -2.83 16 3 C -0.10 -2.78 5.25 30.60 0.16 -2.62 16 4 C 0.06 2.30 4.82 86.30 0.42 2.71 16 5 N -0.54 -22.97 4.45 -905.39 -4.03 -27.00 16 6 C 0.20 11.10 3.68 85.56 0.31 11.42 16 7 C -0.52 -30.40 8.07 25.60 0.21 -30.19 16 8 H 0.06 3.42 7.20 -2.91 -0.02 3.40 16 9 C 0.00 0.23 5.46 84.66 0.46 0.69 16 10 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 11 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 15 C 0.13 4.42 5.34 85.56 0.46 4.87 16 16 C -0.19 -6.63 5.40 -18.59 -0.10 -6.73 16 17 C 0.04 1.19 11.89 66.86 0.79 1.98 16 18 O -0.19 -5.43 10.58 -9.63 -0.10 -5.53 16 19 C 0.02 0.80 7.41 22.97 0.17 0.97 16 20 C -0.07 -1.75 10.06 22.33 0.22 -1.53 16 21 C -0.12 -3.55 9.99 22.34 0.22 -3.33 16 22 C 0.06 2.45 7.29 22.36 0.16 2.62 16 23 F -0.15 -6.14 17.26 44.97 0.78 -5.37 16 24 C -0.11 -4.93 8.36 22.48 0.19 -4.75 16 25 C -0.11 -4.39 5.30 -20.21 -0.11 -4.50 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.73 6.95 -2.39 -0.02 1.72 16 33 H 0.02 0.58 8.00 -2.39 -0.02 0.56 16 34 H 0.06 2.56 6.31 -2.39 -0.02 2.54 16 35 H -0.05 -3.22 7.93 -2.39 -0.02 -3.24 16 36 H 0.03 1.63 4.38 -2.39 -0.01 1.62 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.11 3.01 6.71 -2.39 -0.02 3.00 16 39 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 40 H 0.26 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.10 5.20 7.02 -2.91 -0.02 5.18 16 Total: -1.00 -72.80 354.56 4.43 -68.37 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.01 Total: 12.17 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 4.47 Total: -33.21 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -3.75 Total: -84.18 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.10 Total: -5.53 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.78 Total: -5.37 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.80 4.43 -68.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141853030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.202 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds