Wall clock time and date at job start Tue Mar 31 2020 09:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.20652 * 2 1 4 4 C 1.50670 * 109.33779 * 240.40103 * 2 1 3 5 5 O 1.21304 * 120.31073 * 24.77868 * 4 2 1 6 6 N 1.35267 * 119.38868 * 204.79655 * 4 2 1 7 7 C 1.40314 * 118.27836 * 1.33981 * 6 4 2 8 8 C 1.38204 * 121.33013 * 197.57466 * 7 6 4 9 9 N 1.32757 * 118.79188 * 179.66862 * 8 7 6 10 10 C 1.32403 * 120.94401 * 359.96973 * 9 8 7 11 11 N 1.38592 * 118.98171 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99770 * 359.72708 * 11 10 9 13 13 C 1.53004 * 109.47198 * 180.27666 * 12 11 10 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 N 1.32538 * 122.03689 * 0.36092 * 10 9 8 24 24 C 1.32797 * 120.41731 * 359.48226 * 23 10 9 25 25 N 1.38281 * 120.87474 * 179.83220 * 24 23 10 26 26 C 1.46905 * 110.99919 * 269.62206 * 25 24 23 27 27 H 1.08996 * 109.47214 * 300.39825 * 1 2 3 28 28 H 1.09005 * 109.47142 * 60.40016 * 1 2 3 29 29 H 1.09002 * 109.47289 * 180.39707 * 1 2 3 30 30 H 0.96998 * 120.86084 * 181.30810 * 6 4 2 31 31 H 1.07997 * 120.60536 * 359.64131 * 8 7 6 32 32 H 0.97001 * 120.00381 * 180.02562 * 11 10 9 33 33 H 1.09009 * 109.47454 * 300.27435 * 12 11 10 34 34 H 1.08998 * 109.47492 * 60.27730 * 12 11 10 35 35 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 36 36 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 39 39 H 0.96997 * 120.00401 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46748 * 56.04928 * 26 25 24 41 41 H 1.08996 * 109.47377 * 176.04085 * 26 25 24 42 42 H 1.09001 * 109.47249 * 296.04780 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0292 0.0000 4 6 2.0289 -0.7022 -1.2362 5 8 1.3345 -0.7614 -2.2290 6 7 3.2583 -1.2664 -1.2286 7 6 4.0139 -1.1978 -0.0482 8 6 5.3784 -1.4171 -0.0547 9 7 6.0450 -1.3330 1.0903 10 6 5.4209 -1.0443 2.2218 11 7 6.1568 -0.9664 3.3936 12 6 7.6015 -1.2078 3.3686 13 6 8.1665 -1.0678 4.7836 14 6 9.6752 -1.3206 4.7576 15 6 10.2319 -1.1820 6.1512 16 1 9.5751 -0.9384 6.9733 17 6 11.5795 -1.3661 6.3768 18 7 12.0652 -1.2457 7.5930 19 14 12.7156 -1.7867 4.9549 20 1 13.2405 -0.5345 4.3536 21 1 13.8474 -2.6094 5.4522 22 1 11.9619 -2.5507 3.9284 23 7 4.1132 -0.8339 2.2695 24 6 3.3811 -0.8979 1.1634 25 7 2.0156 -0.6835 1.2029 26 6 1.2910 -1.9425 1.4216 27 1 -0.3633 0.5200 0.8863 28 1 -0.3634 0.5076 -0.8936 29 1 -0.3634 -1.0276 0.0071 30 1 3.6083 -1.7073 -2.0185 31 1 5.8930 -1.6529 -0.9744 32 1 5.7146 -0.7562 4.2310 33 1 7.7954 -2.2145 2.9980 34 1 8.0802 -0.4807 2.7127 35 1 7.9727 -0.0612 5.1542 36 1 7.6879 -1.7950 5.4396 37 1 9.8687 -2.3272 4.3872 38 1 10.1542 -0.5937 4.1016 39 1 13.0132 -1.3756 7.7518 40 1 1.6537 -2.4166 2.3337 41 1 0.2251 -1.7363 1.5186 42 1 1.4567 -2.6089 0.5751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157640829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:23 Heat of formation + Delta-G solvation = 16.555235 kcal Electronic energy + Delta-G solvation = -24275.433987 eV Core-core repulsion = 20676.210704 eV Total energy + Delta-G solvation = -3599.223283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.07001 -41.09986 -38.80749 -37.67828 -36.54952 -35.22817 -34.52846 -33.44029 -31.75919 -30.17872 -28.49863 -28.39434 -25.21764 -24.90576 -24.59233 -23.57027 -22.04537 -20.61201 -19.76245 -19.30648 -18.87544 -18.41368 -17.87102 -17.41230 -16.79068 -16.42943 -16.22060 -16.19770 -15.75411 -15.46799 -15.26258 -15.02336 -14.73879 -14.43182 -13.88346 -13.74003 -13.48148 -13.09132 -13.05958 -12.90665 -12.81556 -12.65671 -12.50095 -12.39796 -11.84494 -11.82275 -11.70235 -11.63704 -11.56684 -11.30186 -10.73911 -10.66050 -10.53358 -9.67734 -8.69525 -8.26870 -6.31267 -0.20474 -0.02344 1.18705 1.39948 1.41520 1.53516 1.62942 1.72976 2.36565 2.39172 2.69392 2.87356 3.08958 3.24163 3.41865 3.62137 3.70631 4.01644 4.05705 4.15790 4.26378 4.28537 4.30204 4.55472 4.69123 4.72515 4.81024 4.84063 4.95349 5.01614 5.06265 5.13104 5.18135 5.46285 5.51140 5.57366 5.59746 5.66420 5.72455 5.92380 6.04709 6.30318 6.41561 6.76201 6.77368 7.24667 7.33470 8.89758 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.037194 B = 0.002391 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.627153 B =11706.744708 C =12269.611257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.127 0.873 4 C 0.491 3.509 5 O -0.543 6.543 6 N -0.639 5.639 7 C -0.054 4.054 8 C 0.190 3.810 9 N -0.564 5.564 10 C 0.556 3.444 11 N -0.690 5.690 12 C 0.151 3.849 13 C -0.104 4.104 14 C -0.008 4.008 15 C -0.532 4.532 16 H 0.033 0.967 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.241 1.241 23 N -0.553 5.553 24 C 0.366 3.634 25 N -0.484 5.484 26 C 0.028 3.972 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.424 0.576 31 H 0.209 0.791 32 H 0.418 0.582 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.243 -0.405 -20.645 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 H 0.144 0.856 4 C 0.277 3.723 5 O -0.418 6.418 6 N -0.288 5.288 7 C -0.160 4.160 8 C 0.021 3.979 9 N -0.288 5.288 10 C 0.197 3.803 11 N -0.326 5.326 12 C 0.027 3.973 13 C -0.142 4.142 14 C -0.046 4.046 15 C -0.570 4.570 16 H 0.051 0.949 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.165 1.165 23 N -0.277 5.277 24 C 0.121 3.879 25 N -0.206 5.206 26 C -0.117 4.117 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.225 0.775 32 H 0.256 0.744 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.953 -0.047 -19.697 30.246 hybrid contribution 0.747 -0.631 -1.144 1.505 sum -22.206 -0.678 -20.840 30.461 Atomic orbital electron populations 1.21850 0.88258 1.04240 1.04707 1.22169 1.00140 0.99253 0.82218 0.85572 1.22101 0.80653 0.78612 0.90959 1.90765 1.55860 1.59123 1.36048 1.43480 1.16234 1.56005 1.13072 1.19512 0.94746 1.13353 0.88389 1.23103 0.88003 0.90090 0.96720 1.68159 1.39811 1.22495 0.98299 1.19296 0.84416 0.89222 0.87334 1.44367 1.07847 1.74388 1.06033 1.21289 0.77324 1.01331 0.97336 1.21503 0.96255 1.01619 0.94830 1.19431 0.93225 0.97061 0.94906 1.21495 0.93673 1.47317 0.94519 0.94909 1.26056 1.00280 0.94724 0.98523 1.70074 1.14368 1.52006 1.22946 0.85640 0.78072 0.79180 0.79663 1.19220 1.21328 1.16453 1.67504 1.05677 1.23336 1.31205 1.19148 0.90558 0.91653 0.86505 1.58080 0.99773 1.25852 1.36845 1.22651 1.00892 0.86703 1.01478 0.88646 0.90014 0.90993 0.73532 0.77493 0.74393 0.91615 0.91610 0.92280 0.92258 0.95651 0.95813 0.92577 0.90494 0.86518 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.98 71.98 0.57 -0.75 16 2 C 0.07 1.05 3.05 44.21 0.13 1.18 16 3 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.49 8.39 6.93 87.57 0.61 9.00 16 5 O -0.54 -12.10 16.95 -3.10 -0.05 -12.15 16 6 N -0.64 -9.19 5.52 -302.27 -1.67 -10.85 16 7 C -0.05 -0.94 6.53 38.19 0.25 -0.69 16 8 C 0.19 3.29 11.24 84.54 0.95 4.24 16 9 N -0.56 -13.76 9.57 -197.86 -1.89 -15.65 16 10 C 0.56 14.81 8.42 261.41 2.20 17.01 16 11 N -0.69 -18.56 5.71 -350.90 -2.00 -20.56 16 12 C 0.15 4.42 5.64 86.38 0.49 4.91 16 13 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 14 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 15 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 16 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 17 C 0.00 0.04 5.47 84.65 0.46 0.50 16 18 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 19 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.24 -10.04 6.54 99.48 0.65 -9.38 16 23 N -0.55 -14.13 10.50 -195.45 -2.05 -16.18 16 24 C 0.37 7.75 5.90 133.39 0.79 8.53 16 25 N -0.48 -8.28 4.85 -707.10 -3.43 -11.71 16 26 C 0.03 0.38 8.59 127.69 1.10 1.48 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.86 7.85 -2.38 -0.02 0.84 16 29 H 0.07 0.67 6.28 -2.39 -0.01 0.65 16 30 H 0.42 4.29 8.92 -92.71 -0.83 3.46 16 31 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.42 10.55 8.59 -92.71 -0.80 9.75 16 33 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.03 1.09 7.20 -2.39 -0.02 1.08 16 38 H 0.02 1.01 7.57 -2.38 -0.02 0.99 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 41 H 0.12 1.01 6.09 -2.39 -0.01 1.00 16 42 H 0.03 0.47 7.65 -2.39 -0.02 0.45 16 Total: -1.00 -72.13 345.48 -1.45 -73.58 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.61 Total: 15.66 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 8.08 Total: 11.85 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -10.75 Total: -134.21 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.05 Total: -12.15 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -72.13 -1.45 -73.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.132 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds