Wall clock time and date at job start Tue Mar 31 2020 08:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47212 * 89.99990 * 9 7 5 11 11 H 1.48498 * 109.47421 * 210.00302 * 9 7 5 12 12 H 1.48504 * 109.47342 * 330.00327 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.38592 * 119.99770 * 275.27531 * 13 3 2 15 15 N 1.32407 * 118.98257 * 359.45996 * 14 13 3 16 16 C 1.32754 * 120.94348 * 179.80281 * 15 14 13 17 17 C 1.38204 * 118.79214 * 0.51897 * 16 15 14 18 18 C 1.39948 * 118.98075 * 359.59547 * 17 16 15 19 19 N 1.32543 * 118.97909 * 179.72196 * 14 13 3 20 20 N 1.38286 * 120.29945 * 180.48328 * 18 17 16 21 21 C 1.46899 * 111.00245 * 199.62974 * 20 18 17 22 22 C 1.46614 * 112.08254 * 324.38137 * 20 18 17 23 23 H 1.09004 * 109.20884 * 170.66049 * 22 20 18 24 24 C 1.52996 * 109.34166 * 290.26507 * 22 20 18 25 25 C 1.50678 * 110.25513 * 50.50744 * 22 20 18 26 26 O 1.21308 * 120.30956 * 145.00509 * 25 22 20 27 27 N 1.35265 * 119.38394 * 325.02853 * 25 22 20 28 28 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 29 29 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 31 31 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 32 32 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 33 33 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 35 35 H 1.07997 * 120.60220 * 180.23431 * 16 15 14 36 36 H 1.08996 * 109.46819 * 56.05074 * 21 20 18 37 37 H 1.09002 * 109.46938 * 176.05021 * 21 20 18 38 38 H 1.08999 * 109.47177 * 296.05275 * 21 20 18 39 39 H 1.08998 * 109.47078 * 180.79982 * 24 22 20 40 40 H 1.08995 * 109.47153 * 300.79500 * 24 22 20 41 41 H 1.09003 * 109.47235 * 60.80156 * 24 22 20 42 42 H 0.96999 * 120.85722 * 181.37186 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5548 -0.3502 -0.7605 11 1 6.3828 0.9225 -2.8175 12 1 6.5570 2.0737 -0.6904 13 7 1.6526 2.0975 1.2519 14 6 0.3987 2.6754 1.3723 15 7 -0.4290 2.6334 0.3396 16 6 -1.6405 3.1711 0.4135 17 6 -2.0239 3.7892 1.5887 18 6 -1.1269 3.8201 2.6625 19 7 0.0671 3.2577 2.5159 20 7 -1.4859 4.4226 3.8543 21 6 -0.2996 4.7571 4.6534 22 6 -2.3274 5.6044 3.6429 23 1 -2.7179 5.9430 4.6027 24 6 -1.4875 6.7189 3.0160 25 6 -3.4761 5.2698 2.7270 26 8 -4.5605 5.7884 2.8905 27 7 -3.2870 4.3856 1.7211 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.8291 -0.0611 -2.9500 34 1 2.2721 2.1230 1.9978 35 1 -2.3125 3.1304 -0.4309 36 1 0.3685 5.3867 4.0658 37 1 -0.6061 5.2922 5.5523 38 1 0.2190 3.8407 4.9351 39 1 -2.1076 7.6035 2.8710 40 1 -0.6558 6.9628 3.6769 41 1 -1.1006 6.3846 2.0533 42 1 -4.0060 4.1695 1.1068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:06 Heat of formation + Delta-G solvation = 45.455139 kcal Electronic energy + Delta-G solvation = -25770.295417 eV Core-core repulsion = 22172.325328 eV Total energy + Delta-G solvation = -3597.970089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79327 -39.69904 -37.87970 -36.32342 -35.17800 -33.02643 -32.69334 -31.24481 -30.36142 -28.80440 -27.29570 -26.63535 -24.51207 -23.42488 -22.91483 -22.59713 -20.36085 -19.09229 -18.64090 -18.10441 -17.17128 -16.53531 -16.23628 -15.70192 -15.28272 -15.24410 -14.77764 -14.55817 -14.35635 -13.96071 -13.71175 -13.43210 -13.10854 -12.83927 -12.69231 -12.39327 -12.17160 -11.84946 -11.75085 -11.37221 -11.30001 -11.09683 -10.94219 -10.82823 -10.78691 -10.34741 -10.25802 -10.22209 -9.68835 -9.40159 -9.12660 -8.69795 -8.62355 -8.33012 -6.97300 -6.18492 -4.27388 1.28741 1.42982 2.38877 2.93753 3.16197 3.21260 3.28663 3.31032 3.70411 4.06372 4.20818 4.30550 4.46541 4.60132 4.71574 4.75448 5.12999 5.13549 5.21746 5.24803 5.31418 5.38829 5.45586 5.70648 5.82392 6.15289 6.18990 6.32764 6.38181 6.47425 6.58775 6.77329 6.97809 7.02612 7.09937 7.28658 7.30254 7.53155 7.63130 7.70281 7.87682 7.88054 8.13160 8.43913 8.68394 8.99117 9.39381 10.86748 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.003705 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.561551 B = 7556.154057 C = 8089.672535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.281 3.719 4 H 0.057 0.943 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.664 5.664 14 C 0.582 3.418 15 N -0.543 5.543 16 C 0.191 3.809 17 C -0.084 4.084 18 C 0.382 3.618 19 N -0.589 5.589 20 N -0.471 5.471 21 C 0.037 3.963 22 C 0.074 3.926 23 H 0.132 0.868 24 C -0.181 4.181 25 C 0.528 3.472 26 O -0.531 6.531 27 N -0.640 5.640 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.166 0.834 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 8.377 8.737 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.179 3.821 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.293 5.293 14 C 0.224 3.776 15 N -0.267 5.267 16 C 0.020 3.980 17 C -0.190 4.190 18 C 0.135 3.865 19 N -0.319 5.319 20 N -0.188 5.188 21 C -0.109 4.109 22 C -0.037 4.037 23 H 0.149 0.851 24 C -0.240 4.240 25 C 0.314 3.686 26 O -0.406 6.406 27 N -0.287 5.287 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.183 0.817 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.761 7.769 8.785 14.639 hybrid contribution 0.456 0.484 -0.332 0.743 sum -8.306 8.253 8.452 14.441 Atomic orbital electron populations 1.21821 0.98472 0.97871 1.00774 1.21963 0.92621 0.99786 1.02348 1.18909 0.94143 0.89041 0.79996 0.92488 1.21218 0.90625 1.39220 1.06392 0.92067 1.24838 0.98616 0.94694 0.95301 1.69878 1.35139 1.37486 1.09338 0.86450 0.84801 0.78504 0.77380 1.20519 1.21047 1.19870 1.45319 1.09465 1.55520 1.19041 1.19350 0.88167 0.86572 0.83506 1.68429 1.03670 1.24402 1.30172 1.22423 0.92287 0.89425 0.93823 1.18505 0.89524 1.13330 0.97660 1.19050 0.88276 0.92465 0.86665 1.67750 1.17239 1.20955 1.25976 1.58253 1.20664 1.25825 1.14052 1.22345 0.89373 1.03051 0.96130 1.22029 0.91927 0.89061 1.00672 0.85053 1.22420 1.00858 0.98605 1.02153 1.20453 0.89069 0.78151 0.80903 1.90771 1.25796 1.51973 1.72051 1.43266 1.11829 1.41695 1.31935 0.92526 0.95975 0.95117 0.88072 0.95132 0.92513 0.76091 0.81740 0.93095 0.90771 0.89050 0.90318 0.90105 0.91652 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.43 37.16 0.31 -2.37 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.28 6.60 2.24 -69.08 -0.15 6.45 16 4 H 0.06 1.50 7.50 -51.93 -0.39 1.11 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.51 11.29 55.43 0.63 -22.89 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.66 -13.50 5.16 -56.88 -0.29 -13.80 16 14 C 0.58 11.00 6.97 -322.58 -2.25 8.75 16 15 N -0.54 -9.89 6.35 -13.89 -0.09 -9.98 16 16 C 0.19 2.77 11.24 -17.17 -0.19 2.57 16 17 C -0.08 -1.17 6.22 -83.35 -0.52 -1.69 16 18 C 0.38 5.69 5.85 -155.07 -0.91 4.79 16 19 N -0.59 -9.95 9.13 -13.13 -0.12 -10.07 16 20 N -0.47 -5.83 4.84 -174.85 -0.85 -6.67 16 21 C 0.04 0.38 8.03 60.06 0.48 0.86 16 22 C 0.07 0.79 2.90 -69.03 -0.20 0.59 16 23 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 24 C -0.18 -1.72 8.47 37.16 0.31 -1.40 16 25 C 0.53 6.77 7.17 -10.78 -0.08 6.70 16 26 O -0.53 -8.07 17.96 5.53 0.10 -7.97 16 27 N -0.64 -7.65 5.52 -9.56 -0.05 -7.70 16 28 H 0.06 1.17 7.64 -51.93 -0.40 0.77 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.62 5.59 -51.93 -0.29 0.33 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.40 7.75 8.65 -40.82 -0.35 7.40 16 35 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.05 0.54 6.75 -51.93 -0.35 0.19 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.09 1.04 7.84 -51.93 -0.41 0.64 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.65 6.48 -51.93 -0.34 0.31 16 41 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 42 H 0.41 4.04 8.92 -40.82 -0.36 3.68 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -29.05 335.52 -10.02 -39.07 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.65 Total: 9.99 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -3.73 Total: 9.94 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -0.77 Total: -71.10 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.10 Total: -7.97 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.05 -10.02 -39.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.522 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds