Wall clock time and date at job start Tue Mar 31 2020 08:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47212 * 89.99990 * 9 7 5 11 11 H 1.48498 * 109.47421 * 210.00302 * 9 7 5 12 12 H 1.48504 * 109.47342 * 330.00327 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.38592 * 119.99770 * 275.27531 * 13 3 2 15 15 N 1.32407 * 118.98257 * 359.45996 * 14 13 3 16 16 C 1.32754 * 120.94348 * 179.80281 * 15 14 13 17 17 C 1.38204 * 118.79214 * 0.51897 * 16 15 14 18 18 C 1.39948 * 118.98075 * 359.59547 * 17 16 15 19 19 N 1.32543 * 118.97909 * 179.72196 * 14 13 3 20 20 N 1.38286 * 120.29945 * 180.48328 * 18 17 16 21 21 C 1.46899 * 111.00245 * 199.62974 * 20 18 17 22 22 C 1.46614 * 112.08254 * 324.38137 * 20 18 17 23 23 H 1.09004 * 109.20884 * 170.66049 * 22 20 18 24 24 C 1.52996 * 109.34166 * 290.26507 * 22 20 18 25 25 C 1.50678 * 110.25513 * 50.50744 * 22 20 18 26 26 O 1.21308 * 120.30956 * 145.00509 * 25 22 20 27 27 N 1.35265 * 119.38394 * 325.02853 * 25 22 20 28 28 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 29 29 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 31 31 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 32 32 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 33 33 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 35 35 H 1.07997 * 120.60220 * 180.23431 * 16 15 14 36 36 H 1.08996 * 109.46819 * 56.05074 * 21 20 18 37 37 H 1.09002 * 109.46938 * 176.05021 * 21 20 18 38 38 H 1.08999 * 109.47177 * 296.05275 * 21 20 18 39 39 H 1.08998 * 109.47078 * 180.79982 * 24 22 20 40 40 H 1.08995 * 109.47153 * 300.79500 * 24 22 20 41 41 H 1.09003 * 109.47235 * 60.80156 * 24 22 20 42 42 H 0.96999 * 120.85722 * 181.37186 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5548 -0.3502 -0.7605 11 1 6.3828 0.9225 -2.8175 12 1 6.5570 2.0737 -0.6904 13 7 1.6526 2.0975 1.2519 14 6 0.3987 2.6754 1.3723 15 7 -0.4290 2.6334 0.3396 16 6 -1.6405 3.1711 0.4135 17 6 -2.0239 3.7892 1.5887 18 6 -1.1269 3.8201 2.6625 19 7 0.0671 3.2577 2.5159 20 7 -1.4859 4.4226 3.8543 21 6 -0.2996 4.7571 4.6534 22 6 -2.3274 5.6044 3.6429 23 1 -2.7179 5.9430 4.6027 24 6 -1.4875 6.7189 3.0160 25 6 -3.4761 5.2698 2.7270 26 8 -4.5605 5.7884 2.8905 27 7 -3.2870 4.3856 1.7211 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.8291 -0.0611 -2.9500 34 1 2.2721 2.1230 1.9978 35 1 -2.3125 3.1304 -0.4309 36 1 0.3685 5.3867 4.0658 37 1 -0.6061 5.2922 5.5523 38 1 0.2190 3.8407 4.9351 39 1 -2.1076 7.6035 2.8710 40 1 -0.6558 6.9628 3.6769 41 1 -1.1006 6.3846 2.0533 42 1 -4.0060 4.1695 1.1068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:06 Heat of formation + Delta-G solvation = 26.679580 kcal Electronic energy + Delta-G solvation = -25771.109587 eV Core-core repulsion = 22172.325328 eV Total energy + Delta-G solvation = -3598.784259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.91129 -40.89539 -39.00467 -37.76985 -36.45724 -34.42633 -34.22960 -32.77670 -31.50517 -30.11694 -28.43826 -28.14357 -25.55836 -25.04362 -24.14306 -23.84645 -21.90094 -20.43374 -19.92494 -19.21057 -18.64113 -17.73602 -17.58365 -16.98686 -16.77047 -16.36262 -16.19662 -15.81126 -15.44068 -15.30804 -15.02142 -14.54197 -14.51114 -14.22237 -14.00214 -13.49808 -13.17252 -13.12585 -13.00519 -12.88630 -12.78244 -12.64923 -12.47183 -12.26948 -12.13801 -12.01997 -11.81796 -11.49738 -11.31327 -11.00528 -10.66031 -10.43904 -9.98556 -9.67445 -8.31635 -8.13051 -6.28449 0.08883 0.22910 1.31916 1.45554 1.46792 1.56007 1.91878 2.00952 2.40442 2.54336 2.92649 3.04412 3.16659 3.36907 3.61011 3.73538 3.88708 3.97623 4.21457 4.39363 4.48443 4.52163 4.60303 4.62285 4.64162 4.79639 4.93556 4.98244 5.05677 5.16718 5.25882 5.33783 5.49026 5.52224 5.62616 5.69740 5.79780 5.89400 5.96939 6.09285 6.16359 6.38845 6.79978 6.83043 6.91961 7.38469 7.59472 8.91332 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.003705 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.561551 B = 7556.154057 C = 8089.672535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.023 0.977 5 C -0.551 4.551 6 H 0.062 0.938 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.963 3.037 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.569 3.431 15 N -0.572 5.572 16 C 0.186 3.814 17 C -0.069 4.069 18 C 0.373 3.627 19 N -0.592 5.592 20 N -0.472 5.472 21 C 0.037 3.963 22 C 0.074 3.926 23 H 0.158 0.842 24 C -0.175 4.175 25 C 0.526 3.474 26 O -0.553 6.553 27 N -0.632 5.632 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.198 0.802 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 9.579 10.092 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.041 0.959 5 C -0.590 4.590 6 H 0.080 0.920 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.307 5.307 14 C 0.211 3.789 15 N -0.297 5.297 16 C 0.018 3.982 17 C -0.175 4.175 18 C 0.126 3.874 19 N -0.323 5.323 20 N -0.189 5.189 21 C -0.108 4.108 22 C -0.036 4.036 23 H 0.175 0.825 24 C -0.233 4.233 25 C 0.314 3.686 26 O -0.430 6.430 27 N -0.280 5.280 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.215 0.785 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.544 9.010 10.168 16.603 hybrid contribution 0.505 0.217 -0.670 0.866 sum -9.039 9.227 9.498 16.033 Atomic orbital electron populations 1.21624 0.96439 0.98602 1.00504 1.21806 0.94365 0.99249 1.00642 1.18414 0.92971 0.88920 0.80375 0.95876 1.21558 0.91914 1.39006 1.06483 0.92014 1.25590 1.02634 0.94432 0.95066 1.70004 1.36671 1.38167 1.09738 0.85490 0.79942 0.78577 0.77182 1.20049 1.20978 1.19417 1.44900 1.10636 1.57130 1.18070 1.19351 0.87859 0.87259 0.84421 1.68404 1.05003 1.25767 1.30487 1.22933 0.91551 0.88662 0.95080 1.18515 0.89855 1.11971 0.97146 1.19415 0.87786 0.92383 0.87818 1.67722 1.18232 1.21067 1.25239 1.58331 1.21371 1.26478 1.12757 1.22435 0.88594 1.02777 0.97042 1.22210 0.91086 0.88661 1.01629 0.82451 1.22390 1.01341 0.98380 1.01231 1.20829 0.89272 0.77629 0.80912 1.90771 1.26843 1.52751 1.72614 1.43234 1.11376 1.41292 1.32125 0.93112 0.94604 0.94947 0.90747 0.95609 0.92570 0.75856 0.78529 0.93291 0.87251 0.90423 0.89058 0.88287 0.93893 0.73651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 8.43 71.98 0.61 -4.07 16 2 C -0.12 -5.71 5.45 30.60 0.17 -5.55 16 3 C 0.30 14.38 2.24 44.25 0.10 14.48 16 4 H 0.02 1.28 7.50 -2.39 -0.02 1.26 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -49.59 11.29 21.45 0.24 -49.35 16 9 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.68 -28.14 5.16 -333.87 -1.72 -29.86 16 14 C 0.57 21.66 6.97 261.41 1.82 23.48 16 15 N -0.57 -20.86 6.35 -197.85 -1.26 -22.12 16 16 C 0.19 5.18 11.24 84.55 0.95 6.13 16 17 C -0.07 -1.81 6.22 38.19 0.24 -1.57 16 18 C 0.37 10.57 5.85 133.39 0.78 11.35 16 19 N -0.59 -19.73 9.13 -195.44 -1.78 -21.51 16 20 N -0.47 -10.58 4.84 -707.11 -3.42 -14.00 16 21 C 0.04 0.66 8.03 127.69 1.03 1.69 16 22 C 0.07 1.37 2.90 44.22 0.13 1.50 16 23 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 24 C -0.17 -2.83 8.47 71.98 0.61 -2.22 16 25 C 0.53 12.25 7.17 87.57 0.63 12.87 16 26 O -0.55 -15.57 17.96 -3.12 -0.06 -15.63 16 27 N -0.63 -13.80 5.52 -302.26 -1.67 -15.47 16 28 H 0.05 2.11 7.64 -2.39 -0.02 2.09 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 1.30 5.59 -2.39 -0.01 1.28 16 31 H 0.07 3.92 5.95 -2.39 -0.01 3.90 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.41 16.00 8.65 -92.71 -0.80 15.20 16 35 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.05 0.92 6.75 -2.39 -0.02 0.91 16 37 H 0.11 1.20 8.09 -2.39 -0.02 1.18 16 38 H 0.08 1.66 7.84 -2.39 -0.02 1.64 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.26 6.48 -2.39 -0.02 1.25 16 41 H 0.04 0.90 7.32 -2.39 -0.02 0.88 16 42 H 0.42 7.38 8.92 -92.71 -0.83 6.55 16 Total: -1.00 -63.40 335.52 -0.47 -63.87 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.55 Total: 29.21 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 7.73 Total: 31.42 kcal Atomic # 7 Polarization: -142.69 SS G_CDS: -9.61 Total: -152.31 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.06 Total: -15.63 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -63.40 -0.47 -63.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.546 kcal (2) G-P(sol) polarization free energy of solvation -63.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds