Wall clock time and date at job start Tue Mar 31 2020 08:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 H 1.08999 * 109.47063 * 304.99758 * 3 2 1 5 5 C 1.50703 * 109.47123 * 184.99828 * 3 2 1 6 6 H 1.07994 * 120.00050 * 239.99899 * 5 3 2 7 7 C 1.37877 * 119.99670 * 59.99885 * 5 3 2 8 8 N 1.31511 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99860 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47361 * 59.99586 * 9 7 5 11 11 H 1.48495 * 109.47269 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46919 * 299.99829 * 9 7 5 13 13 N 1.46504 * 109.47209 * 65.00084 * 3 2 1 14 14 C 1.38594 * 119.99695 * 274.99879 * 13 3 2 15 15 N 1.32404 * 118.98217 * 359.97438 * 14 13 3 16 16 C 1.32756 * 120.94605 * 180.02562 * 15 14 13 17 17 C 1.38198 * 118.79024 * 0.02562 * 16 15 14 18 18 C 1.39954 * 118.98184 * 359.86508 * 17 16 15 19 19 N 1.32533 * 118.98147 * 179.75151 * 14 13 3 20 20 N 1.38295 * 120.29915 * 180.21842 * 18 17 16 21 21 C 1.46895 * 110.99660 * 199.80167 * 20 18 17 22 22 C 1.46621 * 112.08590 * 324.55513 * 20 18 17 23 23 H 1.08998 * 109.34333 * 290.31204 * 22 20 18 24 24 C 1.52998 * 109.33951 * 170.78083 * 22 20 18 25 25 C 1.50677 * 110.23776 * 50.54932 * 22 20 18 26 26 O 1.21301 * 120.31597 * 144.91802 * 25 22 20 27 27 N 1.35280 * 119.36701 * 324.93418 * 25 22 20 28 28 H 1.09007 * 109.46941 * 300.00545 * 1 2 3 29 29 H 1.09000 * 109.46912 * 59.99789 * 1 2 3 30 30 H 1.08994 * 109.47103 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47193 * 239.99937 * 2 1 3 32 32 H 1.09005 * 109.46696 * 119.99759 * 2 1 3 33 33 H 0.97002 * 120.00197 * 180.02562 * 8 7 5 34 34 H 0.96994 * 120.00118 * 95.00263 * 13 3 2 35 35 H 1.07995 * 120.60926 * 179.97438 * 16 15 14 36 36 H 1.09004 * 109.47205 * 56.05203 * 21 20 18 37 37 H 1.08998 * 109.47204 * 176.04551 * 21 20 18 38 38 H 1.08998 * 109.47420 * 296.04754 * 21 20 18 39 39 H 1.09008 * 109.47337 * 60.00147 * 24 22 20 40 40 H 1.08999 * 109.46942 * 179.97438 * 24 22 20 41 41 H 1.08995 * 109.47387 * 299.99666 * 24 22 20 42 42 H 0.96997 * 120.87110 * 181.31133 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8799 -1.3811 10 1 6.5967 0.1452 -0.2342 11 1 6.3979 0.2166 -2.6503 12 1 6.5005 2.2798 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4007 2.6805 1.3702 15 7 -0.4287 2.6341 0.3391 16 6 -1.6367 3.1802 0.4096 17 6 -2.0183 3.8027 1.5830 18 6 -1.1212 3.8340 2.6568 19 7 0.0692 3.2632 2.5134 20 7 -1.4765 4.4456 3.8451 21 6 -0.2879 4.7808 4.6405 22 6 -2.3138 5.6293 3.6271 23 1 -1.7132 6.4179 3.1738 24 6 -2.8576 6.1197 4.9705 25 6 -3.4654 5.2925 2.7156 26 8 -4.5480 5.8148 2.8781 27 7 -3.2803 4.4017 1.7144 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0620 -2.9494 34 1 2.2720 2.1232 1.9978 35 1 -2.3086 3.1396 -0.4348 36 1 0.3819 5.4040 4.0480 37 1 -0.5911 5.3229 5.5362 38 1 0.2275 3.8643 4.9276 39 1 -2.0263 6.3772 5.6269 40 1 -3.4802 7.0001 4.8108 41 1 -3.4535 5.3316 5.4308 42 1 -4.0011 4.1830 1.1032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161053323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:08 Heat of formation + Delta-G solvation = 27.898931 kcal Electronic energy + Delta-G solvation = -25578.029124 eV Core-core repulsion = 21979.297741 eV Total energy + Delta-G solvation = -3598.731383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.82282 -40.91944 -38.91476 -37.78372 -36.49623 -34.42085 -34.34492 -32.79505 -31.51022 -30.12043 -28.49337 -28.26262 -25.15190 -24.95877 -24.08693 -23.91792 -21.79042 -20.44458 -19.96211 -19.20411 -18.67911 -18.11239 -17.61257 -17.12416 -16.77291 -16.41465 -16.16323 -15.74078 -15.44480 -15.27190 -14.92207 -14.58262 -14.50330 -14.15471 -13.73896 -13.48558 -13.15808 -13.08220 -12.95323 -12.90100 -12.72808 -12.52511 -12.41057 -12.27696 -12.13358 -12.02445 -11.82809 -11.49396 -11.33531 -11.02029 -10.66735 -10.44583 -9.99884 -9.69713 -8.33126 -8.13055 -6.28650 0.06678 0.21609 1.30783 1.46600 1.47019 1.54670 1.90542 1.97538 2.39323 2.53476 2.91895 3.03650 3.16478 3.35402 3.59887 3.76056 3.92018 3.96117 4.22912 4.32609 4.50864 4.60173 4.64132 4.70396 4.79324 4.80687 4.98768 5.03623 5.16417 5.22231 5.24312 5.33740 5.49516 5.52110 5.62310 5.69109 5.78732 5.89116 5.95895 6.08484 6.15682 6.38118 6.79393 6.82787 6.91337 7.38088 7.58308 8.91107 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.026646 B = 0.003548 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.581553 B = 7890.131069 C = 8479.494636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.024 0.976 5 C -0.553 4.553 6 H 0.062 0.938 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.570 3.430 15 N -0.571 5.571 16 C 0.188 3.812 17 C -0.070 4.070 18 C 0.368 3.632 19 N -0.593 5.593 20 N -0.471 5.471 21 C 0.036 3.964 22 C 0.070 3.930 23 H 0.099 0.901 24 C -0.127 4.127 25 C 0.523 3.477 26 O -0.545 6.545 27 N -0.634 5.634 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.199 0.801 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 9.343 10.773 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.041 0.959 5 C -0.591 4.591 6 H 0.080 0.920 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.788 3.212 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.307 5.307 14 C 0.211 3.789 15 N -0.296 5.296 16 C 0.020 3.980 17 C -0.176 4.176 18 C 0.122 3.878 19 N -0.323 5.323 20 N -0.189 5.189 21 C -0.108 4.108 22 C -0.040 4.040 23 H 0.117 0.883 24 C -0.185 4.185 25 C 0.310 3.690 26 O -0.422 6.422 27 N -0.282 5.282 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.242 0.758 35 H 0.216 0.784 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.123 8.771 10.855 17.241 hybrid contribution 0.558 0.227 -0.731 0.947 sum -9.565 8.998 10.124 16.582 Atomic orbital electron populations 1.21625 0.96431 0.98612 1.00508 1.21803 0.94369 0.99217 1.00649 1.18417 0.92963 0.88947 0.80342 0.95862 1.21534 0.91925 1.39128 1.06528 0.92002 1.25592 1.02659 0.94403 0.95059 1.69997 1.36760 1.38073 1.09725 0.85545 0.79899 0.78303 0.77457 1.19508 1.20943 1.19906 1.44910 1.10787 1.56900 1.18113 1.19349 0.87882 0.87226 0.84402 1.68408 1.05053 1.25655 1.30511 1.22950 0.91566 0.88443 0.95046 1.18533 0.89907 1.12049 0.97134 1.19463 0.87961 0.92654 0.87750 1.67697 1.18357 1.20981 1.25267 1.58080 1.21283 1.26430 1.13105 1.22481 0.88169 1.02791 0.97408 1.21958 0.92015 0.90632 0.99361 0.88301 1.21774 1.02464 1.02164 0.92109 1.20856 0.89545 0.77880 0.80738 1.90753 1.26787 1.52580 1.72032 1.43254 1.11374 1.41021 1.32577 0.94957 0.93102 0.94582 0.90719 0.95611 0.92546 0.75845 0.78387 0.93858 0.87045 0.90255 0.88478 0.89723 0.91722 0.73595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 8.43 71.98 0.61 -4.08 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.54 16 3 C 0.30 14.41 2.24 44.24 0.10 14.51 16 4 H 0.02 1.29 7.50 -2.39 -0.02 1.27 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.48 16 6 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -49.63 11.29 21.45 0.24 -49.39 16 9 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.68 -28.24 5.16 -333.87 -1.72 -29.96 16 14 C 0.57 21.81 6.99 261.41 1.83 23.64 16 15 N -0.57 -20.92 6.34 -197.87 -1.25 -22.18 16 16 C 0.19 5.26 11.24 84.54 0.95 6.21 16 17 C -0.07 -1.86 6.53 38.19 0.25 -1.61 16 18 C 0.37 10.65 6.68 133.39 0.89 11.54 16 19 N -0.59 -19.99 9.13 -195.44 -1.78 -21.77 16 20 N -0.47 -10.81 4.63 -707.09 -3.28 -14.09 16 21 C 0.04 0.68 8.75 127.69 1.12 1.80 16 22 C 0.07 1.36 2.55 44.21 0.11 1.47 16 23 H 0.10 1.72 8.13 -2.39 -0.02 1.70 16 24 C -0.13 -1.82 8.64 71.98 0.62 -1.20 16 25 C 0.52 12.30 7.67 87.57 0.67 12.98 16 26 O -0.55 -15.10 16.95 -3.09 -0.05 -15.16 16 27 N -0.63 -13.95 5.52 -302.24 -1.67 -15.62 16 28 H 0.03 1.30 5.60 -2.38 -0.01 1.28 16 29 H 0.05 2.12 7.64 -2.39 -0.02 2.10 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 32 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.41 16.07 8.65 -92.71 -0.80 15.27 16 35 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.04 0.86 8.12 -2.38 -0.02 0.84 16 37 H 0.11 1.30 6.01 -2.39 -0.01 1.28 16 38 H 0.08 1.72 7.84 -2.39 -0.02 1.70 16 39 H 0.10 0.88 6.31 -2.38 -0.02 0.87 16 40 H 0.08 1.19 7.85 -2.39 -0.02 1.17 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.42 7.40 8.93 -92.71 -0.83 6.58 16 Total: -1.00 -62.97 336.12 -0.06 -63.03 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.55 Total: 28.76 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 7.99 Total: 32.92 kcal Atomic # 7 Polarization: -143.55 SS G_CDS: -9.46 Total: -153.01 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.05 Total: -15.16 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -62.97 -0.06 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.929 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds