Wall clock time and date at job start Tue Mar 31 2020 08:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47582 * 2 1 4 4 H 1.08998 * 109.34549 * 185.47694 * 3 2 1 5 5 C 1.50674 * 109.21504 * 65.86409 * 3 2 1 6 6 O 1.21296 * 120.30718 * 24.84602 * 5 3 2 7 7 N 1.35266 * 119.38680 * 204.82252 * 5 3 2 8 8 C 1.40165 * 118.28558 * 1.29046 * 7 5 3 9 9 C 1.38310 * 121.34561 * 197.69769 * 8 7 5 10 10 N 1.32673 * 118.78397 * 179.48326 * 9 8 7 11 11 C 1.32474 * 120.94979 * 0.55699 * 10 9 8 12 12 N 1.38500 * 118.97289 * 179.80632 * 11 10 9 13 13 C 1.36973 * 120.00495 * 359.45599 * 12 11 10 14 14 H 1.07996 * 119.99725 * 0.27822 * 13 12 11 15 15 C 1.38798 * 120.00396 * 180.27930 * 13 12 11 16 16 N 1.31568 * 120.00031 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99665 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47163 * 90.00568 * 17 15 13 19 19 H 1.48499 * 109.46579 * 210.00072 * 17 15 13 20 20 H 1.48492 * 109.47246 * 329.99962 * 17 15 13 21 21 N 1.32609 * 122.04332 * 359.52710 * 11 10 9 22 22 C 1.32715 * 120.42049 * 0.21501 * 21 11 10 23 23 N 1.38289 * 120.88058 * 179.79180 * 22 21 11 24 24 C 1.46903 * 110.99595 * 19.92240 * 23 22 21 25 25 C 1.52996 * 109.47212 * 92.70282 * 24 23 22 26 26 C 1.53005 * 109.46859 * 212.70115 * 24 23 22 27 27 H 1.09008 * 109.46899 * 303.43275 * 1 2 3 28 28 H 1.08998 * 109.47620 * 63.43045 * 1 2 3 29 29 H 1.09003 * 109.47319 * 183.43962 * 1 2 3 30 30 H 1.09010 * 109.46966 * 240.00456 * 2 1 3 31 31 H 1.08992 * 109.47743 * 120.00521 * 2 1 3 32 32 H 0.97004 * 120.85967 * 181.27198 * 7 5 3 33 33 H 1.08000 * 120.61077 * 359.76371 * 9 8 7 34 34 H 0.97001 * 120.00197 * 179.73123 * 12 11 10 35 35 H 0.97001 * 119.99586 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.47355 * 332.69852 * 24 23 22 37 37 H 1.08996 * 109.47311 * 59.99544 * 25 24 23 38 38 H 1.08993 * 109.47164 * 179.97438 * 25 24 23 39 39 H 1.09002 * 109.46747 * 299.99966 * 25 24 23 40 40 H 1.09004 * 109.47296 * 51.80685 * 26 24 23 41 41 H 1.08993 * 109.47176 * 171.81027 * 26 24 23 42 42 H 1.09000 * 109.47232 * 291.80858 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1256 1.4415 -0.0982 5 6 1.6569 2.1039 1.2984 6 8 1.4600 1.4354 2.2912 7 7 1.5349 3.4502 1.3468 8 6 1.7456 4.1790 0.1682 9 6 1.9963 5.5388 0.1982 10 7 2.1987 6.1766 -0.9474 11 6 2.1520 5.5317 -2.1036 12 7 2.3655 6.2387 -3.2753 13 6 2.6090 7.5858 -3.2277 14 1 2.6390 8.0958 -2.2763 15 6 2.8172 8.2954 -4.4023 16 7 3.0506 9.5894 -4.3566 17 14 2.7659 7.4130 -6.0481 18 1 1.3781 7.4305 -6.5761 19 1 3.6687 8.1001 -7.0063 20 1 3.2103 6.0073 -5.8701 21 7 1.9126 4.2293 -2.1736 22 6 1.7054 3.5238 -1.0688 23 7 1.4507 2.1660 -1.1310 24 6 1.9045 1.6034 -2.4099 25 6 3.3332 1.0776 -2.2575 26 6 0.9794 0.4553 -2.8188 27 1 -0.3633 0.5662 0.8577 28 1 -0.3634 0.4596 -0.9191 29 1 -0.3634 -1.0258 0.0617 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.3072 3.8997 2.1757 33 1 2.0313 6.0710 1.1374 34 1 2.3386 5.7807 -4.1299 35 1 3.1964 10.0851 -5.1775 36 1 1.8823 2.3783 -3.1761 37 1 3.3554 0.3027 -1.4914 38 1 3.6697 0.6598 -3.2063 39 1 3.9921 1.8955 -1.9662 40 1 -0.0562 0.7938 -2.7861 41 1 1.2249 0.1338 -3.8310 42 1 1.1106 -0.3798 -2.1306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:16 Heat of formation + Delta-G solvation = 59.679875 kcal Electronic energy + Delta-G solvation = -26217.936105 eV Core-core repulsion = 22620.582847 eV Total energy + Delta-G solvation = -3597.353258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57770 -39.39397 -38.21221 -36.19578 -34.56747 -33.57499 -32.57850 -32.15482 -30.90951 -28.62958 -27.63342 -26.11314 -24.97987 -23.81983 -22.70188 -21.92030 -20.60595 -19.12830 -18.60360 -18.17738 -17.36728 -16.83126 -16.28533 -15.77795 -15.30626 -14.77376 -14.66173 -14.38482 -14.09137 -13.91508 -13.63333 -13.53018 -13.23172 -13.19224 -12.95472 -12.38127 -12.07648 -11.95047 -11.73305 -11.57992 -11.50517 -11.28925 -11.09784 -10.94530 -10.80922 -10.70447 -10.44094 -10.26916 -10.05350 -9.95612 -9.89076 -9.03629 -8.44451 -8.22739 -7.07520 -6.64610 -3.94150 1.64250 1.90179 2.70425 2.93970 2.96509 3.01092 3.31696 3.48629 3.85829 4.05589 4.44109 4.45606 4.75174 4.77941 4.92873 4.99456 5.04804 5.13014 5.16843 5.30025 5.43450 5.47572 5.55315 5.63645 5.69229 5.74723 5.77533 5.85000 5.92712 6.06174 6.15928 6.20015 6.29578 6.46433 6.64700 6.67816 6.87312 7.10549 7.29854 7.45895 7.70415 8.00878 8.27667 8.34028 8.64942 9.03860 9.44675 10.45051 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004554 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.403987 B = 6146.582298 C = 7189.446394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.073 3.927 4 H 0.088 0.912 5 C 0.522 3.478 6 O -0.539 6.539 7 N -0.634 5.634 8 C -0.134 4.134 9 C 0.202 3.798 10 N -0.555 5.555 11 C 0.511 3.489 12 N -0.522 5.522 13 C -0.283 4.283 14 H 0.135 0.865 15 C 0.043 3.957 16 N -0.858 5.858 17 Si 0.878 3.122 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.265 1.265 21 N -0.604 5.604 22 C 0.392 3.608 23 N -0.457 5.457 24 C 0.073 3.927 25 C -0.183 4.183 26 C -0.155 4.155 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.407 0.593 33 H 0.155 0.845 34 H 0.390 0.610 35 H 0.280 0.720 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 -16.058 3.785 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.037 4.037 4 H 0.106 0.894 5 C 0.308 3.692 6 O -0.416 6.416 7 N -0.281 5.281 8 C -0.242 4.242 9 C 0.028 3.972 10 N -0.280 5.280 11 C 0.156 3.844 12 N -0.134 5.134 13 C -0.414 4.414 14 H 0.153 0.847 15 C -0.164 4.164 16 N -0.493 5.493 17 Si 0.704 3.296 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.190 1.190 21 N -0.337 5.337 22 C 0.143 3.857 23 N -0.176 5.176 24 C -0.033 4.033 25 C -0.242 4.242 26 C -0.212 4.212 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.173 0.827 34 H 0.227 0.773 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.706 -15.539 2.988 15.916 hybrid contribution 0.428 -0.379 -0.200 0.606 sum -1.277 -15.918 2.788 16.211 Atomic orbital electron populations 1.21843 0.94536 1.01128 1.03292 1.21793 0.97973 0.92160 1.03170 1.21843 0.99486 0.95253 0.87159 0.89443 1.20460 0.76733 0.81998 0.89982 1.90712 1.50744 1.63293 1.36833 1.43146 1.68111 1.06149 1.10688 1.18199 1.25654 0.94775 0.85585 1.22196 0.90140 0.88372 0.96540 1.68062 1.24963 1.38245 0.96727 1.18567 0.95496 0.83690 0.86681 1.40786 1.61201 1.08201 1.03256 1.19704 1.43684 0.80126 0.97866 0.84748 1.25077 0.97111 0.95648 0.98527 1.69669 1.43875 1.06220 1.29527 0.86635 0.79516 0.79884 0.83599 1.19080 1.19603 1.18999 1.67362 1.29001 1.07818 1.29479 1.18845 0.89808 0.89476 0.87574 1.58200 1.55485 0.99734 1.04135 1.21901 0.92747 0.98349 0.90334 1.22517 0.97208 1.01574 1.02853 1.22310 1.00107 0.97804 1.00988 0.92678 0.91018 0.93147 0.89695 0.90093 0.75527 0.82736 0.77311 0.90917 0.86244 0.91683 0.91305 0.92503 0.91624 0.92318 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.76 37.15 0.33 -1.40 16 2 C -0.11 -1.25 4.34 -26.74 -0.12 -1.36 16 3 C 0.07 0.97 1.74 -69.03 -0.12 0.85 16 4 H 0.09 1.13 5.93 -51.93 -0.31 0.82 16 5 C 0.52 7.88 6.85 -10.78 -0.07 7.81 16 6 O -0.54 -9.05 16.20 5.54 0.09 -8.96 16 7 N -0.63 -9.22 5.51 -9.55 -0.05 -9.27 16 8 C -0.13 -2.24 6.53 -83.34 -0.54 -2.79 16 9 C 0.20 3.53 11.24 -17.16 -0.19 3.33 16 10 N -0.55 -11.97 9.08 -13.87 -0.13 -12.10 16 11 C 0.51 11.27 8.37 -322.55 -2.70 8.57 16 12 N -0.52 -12.04 5.23 -12.77 -0.07 -12.10 16 13 C -0.28 -7.27 10.17 -15.05 -0.15 -7.43 16 14 H 0.14 3.80 7.26 -52.49 -0.38 3.42 16 15 C 0.04 1.09 5.50 -17.46 -0.10 1.00 16 16 N -0.86 -22.95 13.97 55.49 0.77 -22.18 16 17 Si 0.88 18.32 27.73 -169.99 -4.71 13.61 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.26 -5.23 6.52 56.52 0.37 -4.86 16 21 N -0.60 -11.89 8.43 -13.11 -0.11 -12.01 16 22 C 0.39 6.89 6.67 -155.10 -1.04 5.86 16 23 N -0.46 -6.63 3.49 -159.51 -0.56 -7.19 16 24 C 0.07 0.93 2.74 -67.71 -0.19 0.75 16 25 C -0.18 -2.04 7.83 37.16 0.29 -1.75 16 26 C -0.15 -1.59 7.74 37.16 0.29 -1.30 16 27 H 0.05 0.75 6.85 -51.92 -0.36 0.39 16 28 H 0.07 0.84 5.07 -51.93 -0.26 0.58 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.78 3.83 -51.92 -0.20 0.58 16 31 H 0.08 0.90 7.65 -51.93 -0.40 0.51 16 32 H 0.41 5.02 8.92 -40.82 -0.36 4.66 16 33 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.39 8.43 5.87 -40.82 -0.24 8.19 16 35 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 1.82 6.34 -51.93 -0.33 1.49 16 37 H 0.06 0.63 4.75 -51.93 -0.25 0.38 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.74 7.96 -51.93 -0.41 0.32 16 40 H 0.06 0.73 7.21 -51.93 -0.37 0.35 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.63 4.13 -51.93 -0.21 0.41 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -28.42 321.45 -9.18 -37.60 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -4.95 Total: 15.63 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -4.31 Total: 12.13 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.14 Total: -74.84 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.71 Total: 13.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.42 -9.18 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.275 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds