Wall clock time and date at job start Tue Mar 31 2020 08:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47582 * 2 1 4 4 H 1.08998 * 109.34549 * 185.47694 * 3 2 1 5 5 C 1.50674 * 109.21504 * 65.86409 * 3 2 1 6 6 O 1.21296 * 120.30718 * 24.84602 * 5 3 2 7 7 N 1.35266 * 119.38680 * 204.82252 * 5 3 2 8 8 C 1.40165 * 118.28558 * 1.29046 * 7 5 3 9 9 C 1.38310 * 121.34561 * 197.69769 * 8 7 5 10 10 N 1.32673 * 118.78397 * 179.48326 * 9 8 7 11 11 C 1.32474 * 120.94979 * 0.55699 * 10 9 8 12 12 N 1.38500 * 118.97289 * 179.80632 * 11 10 9 13 13 C 1.36973 * 120.00495 * 359.45599 * 12 11 10 14 14 H 1.07996 * 119.99725 * 0.27822 * 13 12 11 15 15 C 1.38798 * 120.00396 * 180.27930 * 13 12 11 16 16 N 1.31568 * 120.00031 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99665 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47163 * 90.00568 * 17 15 13 19 19 H 1.48499 * 109.46579 * 210.00072 * 17 15 13 20 20 H 1.48492 * 109.47246 * 329.99962 * 17 15 13 21 21 N 1.32609 * 122.04332 * 359.52710 * 11 10 9 22 22 C 1.32715 * 120.42049 * 0.21501 * 21 11 10 23 23 N 1.38289 * 120.88058 * 179.79180 * 22 21 11 24 24 C 1.46903 * 110.99595 * 19.92240 * 23 22 21 25 25 C 1.52996 * 109.47212 * 92.70282 * 24 23 22 26 26 C 1.53005 * 109.46859 * 212.70115 * 24 23 22 27 27 H 1.09008 * 109.46899 * 303.43275 * 1 2 3 28 28 H 1.08998 * 109.47620 * 63.43045 * 1 2 3 29 29 H 1.09003 * 109.47319 * 183.43962 * 1 2 3 30 30 H 1.09010 * 109.46966 * 240.00456 * 2 1 3 31 31 H 1.08992 * 109.47743 * 120.00521 * 2 1 3 32 32 H 0.97004 * 120.85967 * 181.27198 * 7 5 3 33 33 H 1.08000 * 120.61077 * 359.76371 * 9 8 7 34 34 H 0.97001 * 120.00197 * 179.73123 * 12 11 10 35 35 H 0.97001 * 119.99586 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.47355 * 332.69852 * 24 23 22 37 37 H 1.08996 * 109.47311 * 59.99544 * 25 24 23 38 38 H 1.08993 * 109.47164 * 179.97438 * 25 24 23 39 39 H 1.09002 * 109.46747 * 299.99966 * 25 24 23 40 40 H 1.09004 * 109.47296 * 51.80685 * 26 24 23 41 41 H 1.08993 * 109.47176 * 171.81027 * 26 24 23 42 42 H 1.09000 * 109.47232 * 291.80858 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1256 1.4415 -0.0982 5 6 1.6569 2.1039 1.2984 6 8 1.4600 1.4354 2.2912 7 7 1.5349 3.4502 1.3468 8 6 1.7456 4.1790 0.1682 9 6 1.9963 5.5388 0.1982 10 7 2.1987 6.1766 -0.9474 11 6 2.1520 5.5317 -2.1036 12 7 2.3655 6.2387 -3.2753 13 6 2.6090 7.5858 -3.2277 14 1 2.6390 8.0958 -2.2763 15 6 2.8172 8.2954 -4.4023 16 7 3.0506 9.5894 -4.3566 17 14 2.7659 7.4130 -6.0481 18 1 1.3781 7.4305 -6.5761 19 1 3.6687 8.1001 -7.0063 20 1 3.2103 6.0073 -5.8701 21 7 1.9126 4.2293 -2.1736 22 6 1.7054 3.5238 -1.0688 23 7 1.4507 2.1660 -1.1310 24 6 1.9045 1.6034 -2.4099 25 6 3.3332 1.0776 -2.2575 26 6 0.9794 0.4553 -2.8188 27 1 -0.3633 0.5662 0.8577 28 1 -0.3634 0.4596 -0.9191 29 1 -0.3634 -1.0258 0.0617 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.3072 3.8997 2.1757 33 1 2.0313 6.0710 1.1374 34 1 2.3386 5.7807 -4.1299 35 1 3.1964 10.0851 -5.1775 36 1 1.8823 2.3783 -3.1761 37 1 3.3554 0.3027 -1.4914 38 1 3.6697 0.6598 -3.2063 39 1 3.9921 1.8955 -1.9662 40 1 -0.0562 0.7938 -2.7861 41 1 1.2249 0.1338 -3.8310 42 1 1.1106 -0.3798 -2.1306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:15 Heat of formation + Delta-G solvation = 42.160721 kcal Electronic energy + Delta-G solvation = -26218.695793 eV Core-core repulsion = 22620.582847 eV Total energy + Delta-G solvation = -3598.112946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.90679 -40.86936 -39.43691 -37.71841 -36.10233 -34.89341 -33.95495 -33.60355 -32.19227 -30.04624 -28.68852 -27.13373 -26.70991 -25.18868 -24.04972 -23.23699 -21.71826 -20.64059 -20.09080 -19.51744 -18.81791 -18.14847 -17.60189 -17.19212 -16.76573 -16.22303 -16.07671 -15.64103 -15.33587 -15.03755 -14.96200 -14.87655 -14.64166 -14.41595 -14.16061 -13.93771 -13.40848 -12.96242 -12.80190 -12.67481 -12.55590 -12.51009 -12.44491 -12.29038 -12.16113 -11.95666 -11.80966 -11.73677 -11.54592 -11.24035 -11.05368 -10.63820 -9.93561 -9.75799 -8.56410 -8.46571 -5.86456 0.17216 0.39516 1.28454 1.31384 1.37768 1.44126 2.05395 2.12317 2.17910 2.58841 2.80008 3.15862 3.30313 3.47632 3.72645 3.76473 3.89928 4.02868 4.13575 4.16915 4.26401 4.40067 4.43387 4.55627 4.70265 4.78317 4.85051 4.94312 5.03800 5.06830 5.15422 5.25573 5.30733 5.35194 5.43756 5.52973 5.62023 5.70142 5.86048 5.96665 6.13775 6.41246 6.52157 6.93087 6.99860 7.23082 7.79512 8.67925 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004554 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.403987 B = 6146.582298 C = 7189.446394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.070 3.930 4 H 0.099 0.901 5 C 0.521 3.479 6 O -0.550 6.550 7 N -0.630 5.630 8 C -0.107 4.107 9 C 0.195 3.805 10 N -0.592 5.592 11 C 0.519 3.481 12 N -0.544 5.544 13 C -0.295 4.295 14 H 0.093 0.907 15 C -0.007 4.007 16 N -0.917 5.917 17 Si 0.946 3.054 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.247 1.247 21 N -0.603 5.603 22 C 0.381 3.619 23 N -0.453 5.453 24 C 0.068 3.932 25 C -0.178 4.178 26 C -0.148 4.148 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.419 0.581 33 H 0.191 0.809 34 H 0.395 0.605 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -20.231 4.154 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.040 4.040 4 H 0.116 0.884 5 C 0.308 3.692 6 O -0.427 6.427 7 N -0.278 5.278 8 C -0.215 4.215 9 C 0.025 3.975 10 N -0.319 5.319 11 C 0.163 3.837 12 N -0.163 5.163 13 C -0.425 4.425 14 H 0.111 0.889 15 C -0.208 4.208 16 N -0.556 5.556 17 Si 0.768 3.232 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.172 1.172 21 N -0.336 5.336 22 C 0.132 3.868 23 N -0.171 5.171 24 C -0.038 4.038 25 C -0.236 4.236 26 C -0.204 4.204 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.259 0.741 33 H 0.208 0.792 34 H 0.232 0.768 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.009 -19.816 3.478 20.219 hybrid contribution 0.395 0.539 0.124 0.680 sum -1.614 -19.277 3.602 19.677 Atomic orbital electron populations 1.21824 0.94781 1.02061 1.01916 1.21851 0.97637 0.90402 1.04659 1.22057 1.00175 0.96245 0.85547 0.88377 1.20827 0.75991 0.81851 0.90531 1.90719 1.51011 1.63401 1.37570 1.43138 1.68066 1.06210 1.10414 1.18332 1.22139 0.94680 0.86327 1.22793 0.89055 0.88935 0.96745 1.68114 1.26380 1.39628 0.97740 1.18920 0.93539 0.84444 0.86820 1.40491 1.64830 1.07241 1.03697 1.19273 1.45198 0.81418 0.96618 0.88867 1.25776 0.96814 0.96166 1.02036 1.69795 1.47391 1.07944 1.30428 0.85586 0.79546 0.79405 0.78614 1.18628 1.19448 1.17166 1.67473 1.28957 1.06748 1.30415 1.19322 0.89031 0.91088 0.87315 1.58305 1.55009 0.98146 1.05622 1.22027 0.94672 0.98609 0.88501 1.22485 0.95288 1.01271 1.04570 1.22267 0.98763 0.96956 1.02462 0.95146 0.91375 0.91021 0.87157 0.89603 0.74124 0.79185 0.76756 0.90929 0.88711 0.89698 0.89438 0.94691 0.92548 0.90528 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.76 71.98 0.63 -2.25 16 2 C -0.11 -1.93 4.34 30.59 0.13 -1.80 16 3 C 0.07 1.62 1.74 44.21 0.08 1.69 16 4 H 0.10 2.16 5.93 -2.39 -0.01 2.15 16 5 C 0.52 14.24 6.85 87.57 0.60 14.84 16 6 O -0.55 -16.90 16.20 -3.08 -0.05 -16.95 16 7 N -0.63 -16.72 5.51 -302.24 -1.67 -18.39 16 8 C -0.11 -3.39 6.53 38.26 0.25 -3.14 16 9 C 0.20 6.61 11.24 84.58 0.95 7.56 16 10 N -0.59 -25.93 9.08 -197.81 -1.80 -27.73 16 11 C 0.52 23.20 8.37 261.39 2.19 25.38 16 12 N -0.54 -25.84 5.23 -194.33 -1.02 -26.86 16 13 C -0.29 -15.98 10.17 84.02 0.85 -15.12 16 14 H 0.09 5.68 7.26 -2.91 -0.02 5.66 16 15 C -0.01 -0.36 5.50 84.87 0.47 0.10 16 16 N -0.92 -52.04 13.97 21.65 0.30 -51.73 16 17 Si 0.95 38.87 27.73 68.60 1.90 40.77 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.25 -9.28 6.52 99.48 0.65 -8.63 16 21 N -0.60 -23.37 8.43 -195.40 -1.65 -25.02 16 22 C 0.38 12.75 6.67 133.43 0.89 13.64 16 23 N -0.45 -11.97 3.49 -658.58 -2.30 -14.27 16 24 C 0.07 1.54 2.74 44.91 0.12 1.66 16 25 C -0.18 -3.34 7.83 71.98 0.56 -2.78 16 26 C -0.15 -2.45 7.74 71.98 0.56 -1.90 16 27 H 0.03 0.74 6.85 -2.38 -0.02 0.72 16 28 H 0.07 1.37 5.07 -2.39 -0.01 1.36 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.43 3.83 -2.38 -0.01 1.42 16 31 H 0.09 1.54 7.65 -2.39 -0.02 1.52 16 32 H 0.42 9.23 8.92 -92.70 -0.83 8.40 16 33 H 0.19 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.40 17.27 5.87 -92.71 -0.54 16.72 16 35 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.09 2.71 6.34 -2.39 -0.02 2.70 16 37 H 0.08 1.24 4.75 -2.39 -0.01 1.23 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 0.81 7.96 -2.39 -0.02 0.79 16 40 H 0.06 1.07 7.21 -2.39 -0.02 1.05 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.13 4.13 -2.39 -0.01 1.12 16 Total: -1.00 -65.36 321.45 1.69 -63.68 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.33 Total: 38.58 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 8.29 Total: 37.90 kcal Atomic # 7 Polarization: -155.86 SS G_CDS: -8.13 Total: -163.99 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Total: -65.36 1.69 -63.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.839 kcal (2) G-P(sol) polarization free energy of solvation -65.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds