Wall clock time and date at job start Tue Mar 31 2020 08:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.53004 * 109.47126 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47039 * 176.89667 * 4 3 2 6 6 C 1.46904 * 110.99846 * 71.60763 * 5 4 3 7 7 C 1.50699 * 109.46858 * 65.62347 * 6 5 4 8 8 H 1.07999 * 120.00100 * 3.29163 * 7 6 5 9 9 C 1.37881 * 119.99999 * 183.28620 * 7 6 5 10 10 N 1.31517 * 119.99659 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99999 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47217 * 90.00491 * 11 9 7 13 13 H 1.48501 * 109.46905 * 210.00149 * 11 9 7 14 14 H 1.48494 * 109.47253 * 329.99840 * 11 9 7 15 15 C 1.46893 * 110.99967 * 195.56191 * 5 4 3 16 16 H 1.09003 * 109.55271 * 308.63022 * 15 5 4 17 17 C 1.53506 * 109.55137 * 68.92514 * 15 5 4 18 18 S 1.81605 * 107.35929 * 192.30311 * 17 15 5 19 19 C 1.76456 * 102.64395 * 313.56420 * 18 17 15 20 20 C 1.39632 * 117.73139 * 193.22824 * 19 18 17 21 21 C 1.37742 * 120.61354 * 181.66936 * 20 19 18 22 22 C 1.38336 * 119.52190 * 359.49658 * 21 20 19 23 23 C 1.37776 * 120.01253 * 0.15192 * 22 21 20 24 24 C 1.38173 * 122.29780 * 13.90488 * 19 18 17 25 25 C 1.50048 * 124.70667 * 357.17661 * 24 19 18 26 26 H 1.09007 * 109.46698 * 299.99632 * 1 2 3 27 27 H 1.08997 * 109.47537 * 59.99690 * 1 2 3 28 28 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46698 * 240.00368 * 2 1 3 30 30 H 1.08997 * 109.47537 * 120.00310 * 2 1 3 31 31 H 1.09001 * 109.47160 * 60.00094 * 3 2 1 32 32 H 1.09007 * 109.47018 * 300.00509 * 3 2 1 33 33 H 1.08998 * 109.47212 * 56.89914 * 4 3 2 34 34 H 1.08999 * 109.46439 * 296.89538 * 4 3 2 35 35 H 1.09002 * 109.47130 * 185.62096 * 6 5 4 36 36 H 1.08998 * 109.47044 * 305.62604 * 6 5 4 37 37 H 0.97001 * 119.99879 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.87832 * 311.76498 * 17 15 5 39 39 H 1.09001 * 109.88092 * 72.76218 * 17 15 5 40 40 H 1.08001 * 119.69023 * 1.40361 * 20 19 18 41 41 H 1.08002 * 120.23633 * 179.73409 * 21 20 19 42 42 H 1.08005 * 119.99628 * 179.86474 * 22 21 20 43 43 H 1.07997 * 119.47922 * 179.71842 * 23 22 21 44 44 H 1.08999 * 108.67288 * 145.02182 * 25 24 19 45 45 H 1.09000 * 108.66802 * 262.93260 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8254 -0.0756 6 6 3.8278 3.5353 1.1894 7 6 4.6615 2.9087 2.2772 8 1 5.3396 2.1020 2.0409 9 6 4.5588 3.3654 3.5741 10 7 3.7328 4.3476 3.8619 11 14 5.5929 2.5892 4.9223 12 1 6.8852 3.3122 5.0333 13 1 4.8658 2.6738 6.2144 14 1 5.8495 1.1646 4.5912 15 6 5.4806 2.8614 -0.4466 16 1 6.0459 2.1998 0.2098 17 6 5.6429 2.4046 -1.9031 18 16 7.4135 2.1171 -2.1867 19 6 8.1559 3.5548 -1.4826 20 6 9.4993 3.8008 -1.7731 21 6 10.1474 4.8870 -1.2276 22 6 9.4547 5.7455 -0.3928 23 6 8.1271 5.5096 -0.1098 24 6 7.4591 4.4166 -0.6575 25 6 6.0053 4.2803 -0.3122 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.8813 -0.8617 34 1 3.9337 0.9774 0.9157 35 1 4.1075 4.5826 1.0749 36 1 2.7730 3.4679 1.4557 37 1 3.6608 4.6691 4.7742 38 1 5.0868 1.4815 -2.0663 39 1 5.2796 3.1801 -2.5775 40 1 10.0364 3.1309 -2.4282 41 1 11.1878 5.0691 -1.4530 42 1 9.9559 6.5983 0.0408 43 1 7.5959 6.1829 0.5465 44 1 5.8583 4.6108 0.7161 45 1 5.4280 4.9297 -0.9704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172200894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:51 Heat of formation + Delta-G solvation = 11.027471 kcal Electronic energy + Delta-G solvation = -23294.389087 eV Core-core repulsion = 20208.926565 eV Total energy + Delta-G solvation = -3085.462522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.29044 -37.83767 -34.87118 -33.22370 -32.22690 -30.79544 -29.98268 -28.71189 -26.37220 -25.93342 -23.17295 -22.69242 -22.44010 -21.21955 -20.15840 -19.12698 -17.43210 -16.29694 -15.73197 -15.66470 -15.13297 -14.98648 -14.71652 -14.36179 -13.85750 -13.76947 -13.47434 -13.13121 -12.83579 -12.64382 -12.48673 -12.46133 -12.13646 -11.84316 -11.53422 -11.40363 -11.11978 -10.98839 -10.88514 -10.84304 -10.69909 -10.52011 -10.38507 -10.13501 -10.02030 -9.87484 -9.78853 -9.52298 -9.29628 -8.48815 -8.46562 -7.30373 -7.15071 -6.09146 -4.17853 1.42250 1.54769 1.88253 2.62448 3.23814 3.31221 3.34667 3.88406 4.36246 4.70330 5.03080 5.05879 5.12327 5.22258 5.23825 5.27569 5.34092 5.48706 5.50545 5.54051 5.70927 5.77753 5.86278 5.92504 6.00680 6.02679 6.09071 6.12569 6.16693 6.19996 6.32325 6.45308 6.46320 6.50634 6.57372 6.67414 6.68831 6.85746 6.86412 6.92359 7.12670 7.16869 7.47947 7.84076 7.95563 8.16983 8.21510 8.91746 9.49502 10.95613 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.005698 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.430226 B = 4912.734592 C = 6793.242503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C 0.058 3.942 5 N -0.534 5.534 6 C 0.183 3.817 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.889 5.889 11 Si 0.883 3.117 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.100 3.900 16 H 0.059 0.941 17 C -0.092 4.092 18 S -0.145 6.145 19 C -0.077 4.077 20 C -0.104 4.104 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.106 4.106 24 C -0.059 4.059 25 C -0.090 4.090 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -1.851 -10.655 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.070 4.070 5 N -0.258 5.258 6 C 0.057 3.943 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.134 4.134 10 N -0.527 5.527 11 Si 0.711 3.289 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.010 4.010 16 H 0.077 0.923 17 C -0.240 4.240 18 S 0.098 5.902 19 C -0.189 4.189 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.065 4.065 25 C -0.127 4.127 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.579 -2.524 -11.461 12.597 hybrid contribution 0.525 0.288 2.236 2.314 sum 5.104 -2.236 -9.226 10.778 Atomic orbital electron populations 1.21749 0.96369 1.00803 1.01743 1.21483 0.95372 0.97777 1.01385 1.21516 0.95436 0.95347 1.02433 1.21985 0.94853 0.90389 0.99801 1.62566 1.13503 1.14263 1.35508 1.19882 0.97420 0.93946 0.83022 1.21688 1.24206 1.19133 0.93626 0.92626 1.24906 0.95130 0.94855 0.98523 1.69933 1.36290 1.26585 1.19889 0.86729 0.80547 0.79938 0.81702 1.20586 1.21138 1.19938 1.21248 0.91789 0.96302 0.91668 0.92318 1.23984 0.92433 1.05992 1.01601 1.85169 1.05327 1.25649 1.74059 1.21338 0.97133 0.98796 1.01644 1.20821 0.92797 0.98232 1.00829 1.20918 0.99497 0.95116 0.98288 1.21024 0.94629 0.99749 0.98974 1.21319 0.94739 0.97161 0.99389 1.19865 0.96481 0.94776 0.95399 1.20483 0.89484 0.97550 1.05152 0.92715 0.93033 0.93423 0.92751 0.92240 0.91300 0.92279 0.93232 0.93466 0.94895 0.94402 0.92795 0.87361 0.89092 0.86057 0.85984 0.86139 0.85691 0.87029 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.11 -1.82 5.20 -26.73 -0.14 -1.96 16 4 C 0.06 1.06 4.70 -3.82 -0.02 1.04 16 5 N -0.53 -10.52 4.53 -228.45 -1.04 -11.56 16 6 C 0.18 4.33 4.45 -4.97 -0.02 4.31 16 7 C -0.55 -14.16 6.91 -34.44 -0.24 -14.40 16 8 H 0.06 1.47 6.01 -52.49 -0.32 1.15 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 11 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.10 1.86 1.31 -68.02 -0.09 1.77 16 16 H 0.06 1.25 6.66 -51.93 -0.35 0.90 16 17 C -0.09 -1.43 5.97 37.42 0.22 -1.21 16 18 S -0.14 -2.24 22.00 -107.50 -2.36 -4.61 16 19 C -0.08 -1.25 6.05 -39.09 -0.24 -1.49 16 20 C -0.10 -1.48 9.65 -39.24 -0.38 -1.85 16 21 C -0.12 -1.52 10.06 -39.73 -0.40 -1.92 16 22 C -0.12 -1.66 10.03 -39.71 -0.40 -2.06 16 23 C -0.11 -1.66 9.48 -39.35 -0.37 -2.04 16 24 C -0.06 -1.01 5.77 -104.56 -0.60 -1.61 16 25 C -0.09 -1.65 3.97 -28.77 -0.11 -1.76 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.31 6.77 -51.93 -0.35 0.96 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.80 6.01 -51.93 -0.31 0.49 16 34 H 0.05 0.98 6.66 -51.93 -0.35 0.64 16 35 H 0.03 0.83 6.28 -51.93 -0.33 0.50 16 36 H 0.04 0.98 6.55 -51.93 -0.34 0.64 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.11 1.59 6.15 -51.93 -0.32 1.27 16 39 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 40 H 0.12 1.51 8.05 -52.49 -0.42 1.09 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.13 1.87 8.01 -52.49 -0.42 1.45 16 44 H 0.11 2.37 5.56 -51.93 -0.29 2.08 16 45 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -27.17 357.74 -12.12 -39.29 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.15 Total: 4.44 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.67 Total: -24.77 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.30 Total: -35.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.36 Total: -4.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.17 -12.12 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172200894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.313 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds