Wall clock time and date at job start Tue Mar 31 2020 08:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.53004 * 109.47126 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47039 * 176.89667 * 4 3 2 6 6 C 1.46904 * 110.99846 * 71.60763 * 5 4 3 7 7 C 1.50699 * 109.46858 * 65.62347 * 6 5 4 8 8 H 1.07999 * 120.00100 * 3.29163 * 7 6 5 9 9 C 1.37881 * 119.99999 * 183.28620 * 7 6 5 10 10 N 1.31517 * 119.99659 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99999 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47217 * 90.00491 * 11 9 7 13 13 H 1.48501 * 109.46905 * 210.00149 * 11 9 7 14 14 H 1.48494 * 109.47253 * 329.99840 * 11 9 7 15 15 C 1.46893 * 110.99967 * 195.56191 * 5 4 3 16 16 H 1.09003 * 109.55271 * 308.63022 * 15 5 4 17 17 C 1.53506 * 109.55137 * 68.92514 * 15 5 4 18 18 S 1.81605 * 107.35929 * 192.30311 * 17 15 5 19 19 C 1.76456 * 102.64395 * 313.56420 * 18 17 15 20 20 C 1.39632 * 117.73139 * 193.22824 * 19 18 17 21 21 C 1.37742 * 120.61354 * 181.66936 * 20 19 18 22 22 C 1.38336 * 119.52190 * 359.49658 * 21 20 19 23 23 C 1.37776 * 120.01253 * 0.15192 * 22 21 20 24 24 C 1.38173 * 122.29780 * 13.90488 * 19 18 17 25 25 C 1.50048 * 124.70667 * 357.17661 * 24 19 18 26 26 H 1.09007 * 109.46698 * 299.99632 * 1 2 3 27 27 H 1.08997 * 109.47537 * 59.99690 * 1 2 3 28 28 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46698 * 240.00368 * 2 1 3 30 30 H 1.08997 * 109.47537 * 120.00310 * 2 1 3 31 31 H 1.09001 * 109.47160 * 60.00094 * 3 2 1 32 32 H 1.09007 * 109.47018 * 300.00509 * 3 2 1 33 33 H 1.08998 * 109.47212 * 56.89914 * 4 3 2 34 34 H 1.08999 * 109.46439 * 296.89538 * 4 3 2 35 35 H 1.09002 * 109.47130 * 185.62096 * 6 5 4 36 36 H 1.08998 * 109.47044 * 305.62604 * 6 5 4 37 37 H 0.97001 * 119.99879 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.87832 * 311.76498 * 17 15 5 39 39 H 1.09001 * 109.88092 * 72.76218 * 17 15 5 40 40 H 1.08001 * 119.69023 * 1.40361 * 20 19 18 41 41 H 1.08002 * 120.23633 * 179.73409 * 21 20 19 42 42 H 1.08005 * 119.99628 * 179.86474 * 22 21 20 43 43 H 1.07997 * 119.47922 * 179.71842 * 23 22 21 44 44 H 1.08999 * 108.67288 * 145.02182 * 25 24 19 45 45 H 1.09000 * 108.66802 * 262.93260 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8254 -0.0756 6 6 3.8278 3.5353 1.1894 7 6 4.6615 2.9087 2.2772 8 1 5.3396 2.1020 2.0409 9 6 4.5588 3.3654 3.5741 10 7 3.7328 4.3476 3.8619 11 14 5.5929 2.5892 4.9223 12 1 6.8852 3.3122 5.0333 13 1 4.8658 2.6738 6.2144 14 1 5.8495 1.1646 4.5912 15 6 5.4806 2.8614 -0.4466 16 1 6.0459 2.1998 0.2098 17 6 5.6429 2.4046 -1.9031 18 16 7.4135 2.1171 -2.1867 19 6 8.1559 3.5548 -1.4826 20 6 9.4993 3.8008 -1.7731 21 6 10.1474 4.8870 -1.2276 22 6 9.4547 5.7455 -0.3928 23 6 8.1271 5.5096 -0.1098 24 6 7.4591 4.4166 -0.6575 25 6 6.0053 4.2803 -0.3122 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.8813 -0.8617 34 1 3.9337 0.9774 0.9157 35 1 4.1075 4.5826 1.0749 36 1 2.7730 3.4679 1.4557 37 1 3.6608 4.6691 4.7742 38 1 5.0868 1.4815 -2.0663 39 1 5.2796 3.1801 -2.5775 40 1 10.0364 3.1309 -2.4282 41 1 11.1878 5.0691 -1.4530 42 1 9.9559 6.5983 0.0408 43 1 7.5959 6.1829 0.5465 44 1 5.8583 4.6108 0.7161 45 1 5.4280 4.9297 -0.9704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172200894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:50 Heat of formation + Delta-G solvation = -1.576836 kcal Electronic energy + Delta-G solvation = -23294.935650 eV Core-core repulsion = 20208.926565 eV Total energy + Delta-G solvation = -3086.009085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59431 -39.30109 -36.14678 -35.03474 -33.80347 -31.95635 -31.33232 -30.22367 -27.74444 -27.67853 -24.91686 -24.03433 -23.60854 -22.43651 -21.54816 -20.77144 -18.68632 -18.26091 -17.20153 -16.95359 -16.54045 -16.42366 -16.23337 -15.81948 -15.22019 -15.08288 -14.87185 -14.45480 -14.30446 -13.96273 -13.79216 -13.74755 -13.60377 -13.24237 -13.20647 -12.96407 -12.76071 -12.56249 -12.33902 -12.13521 -12.05235 -11.95295 -11.90702 -11.82288 -11.65033 -11.39546 -11.29773 -10.89730 -10.62927 -10.56942 -9.67259 -9.07923 -8.36337 -8.16681 -6.33174 0.26144 0.39271 0.65619 1.30724 1.33026 1.35841 1.41508 2.34076 2.73609 3.09005 3.21707 3.63686 3.80895 3.93759 3.99592 4.10525 4.17027 4.25901 4.31617 4.35596 4.44310 4.50896 4.53266 4.61334 4.68365 4.76345 4.82819 4.88571 4.98973 5.02801 5.08503 5.11622 5.15672 5.20266 5.25742 5.34372 5.37559 5.39126 5.48619 5.52007 5.55900 5.59939 5.76744 6.00423 6.05152 6.23835 6.48409 6.85853 7.36918 8.85451 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.005698 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.430226 B = 4912.734592 C = 6793.242503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.102 4.102 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.201 3.799 7 C -0.544 4.544 8 H 0.047 0.953 9 C 0.021 3.979 10 N -0.920 5.920 11 Si 0.940 3.060 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.105 3.895 16 H 0.029 0.971 17 C -0.084 4.084 18 S -0.130 6.130 19 C -0.097 4.097 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.085 4.085 25 C -0.078 4.078 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -2.797 -12.239 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.140 4.140 4 C -0.068 4.068 5 N -0.252 5.252 6 C 0.074 3.926 7 C -0.583 4.583 8 H 0.065 0.935 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.766 3.234 12 H -0.202 1.202 13 H -0.205 1.205 14 H -0.197 1.197 15 C -0.005 4.005 16 H 0.047 0.953 17 C -0.233 4.233 18 S 0.112 5.888 19 C -0.209 4.209 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.092 4.092 25 C -0.116 4.116 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.137 0.863 44 H 0.092 0.908 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.403 -3.479 -13.056 14.951 hybrid contribution 0.039 0.619 2.684 2.755 sum 6.442 -2.860 -10.371 12.540 Atomic orbital electron populations 1.21729 0.94958 1.02069 1.01657 1.21453 0.96604 0.95591 1.01901 1.21451 0.94149 0.97238 1.01184 1.22058 0.95998 0.89279 0.99505 1.62540 1.14645 1.15101 1.32939 1.19484 0.95338 0.93311 0.84436 1.21841 1.23722 1.18444 0.94312 0.93475 1.25600 0.96259 0.95399 1.00643 1.70033 1.37755 1.27864 1.20348 0.85830 0.79162 0.79080 0.79348 1.20233 1.20536 1.19714 1.21196 0.90209 0.95885 0.93237 0.95278 1.23862 0.93566 1.06789 0.99063 1.85028 1.04387 1.25604 1.73790 1.21553 0.98302 0.98945 1.02129 1.21166 0.91946 0.99036 1.00925 1.21385 1.01092 0.93696 0.96527 1.21389 0.93546 1.00579 0.98426 1.21444 0.96147 0.97064 0.99883 1.19787 0.95693 0.96366 0.97319 1.20264 0.91256 0.97262 1.02770 0.93915 0.92066 0.91467 0.90670 0.93223 0.94643 0.91335 0.90428 0.96404 0.96850 0.96928 0.92717 0.86007 0.88217 0.84005 0.82098 0.83240 0.86316 0.90838 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.16 5.93 30.59 0.18 -2.98 16 3 C -0.10 -3.43 5.20 30.59 0.16 -3.28 16 4 C 0.06 2.20 4.70 86.30 0.41 2.61 16 5 N -0.53 -21.60 4.53 -876.68 -3.97 -25.58 16 6 C 0.20 10.11 4.45 85.56 0.38 10.49 16 7 C -0.54 -29.48 6.91 25.60 0.18 -29.30 16 8 H 0.05 2.60 6.01 -2.91 -0.02 2.58 16 9 C 0.02 1.16 5.46 84.66 0.46 1.62 16 10 N -0.92 -53.70 13.29 21.45 0.28 -53.42 16 11 Si 0.94 44.25 29.54 68.60 2.03 46.28 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.11 4.00 1.31 44.72 0.06 4.06 16 16 H 0.03 1.29 6.66 -2.39 -0.02 1.27 16 17 C -0.08 -2.57 5.97 72.15 0.43 -2.14 16 18 S -0.13 -3.87 22.00 -56.49 -1.24 -5.11 16 19 C -0.10 -3.06 6.05 22.59 0.14 -2.92 16 20 C -0.11 -2.78 9.65 22.49 0.22 -2.56 16 21 C -0.11 -2.38 10.06 22.18 0.22 -2.16 16 22 C -0.12 -2.94 10.03 22.18 0.22 -2.72 16 23 C -0.13 -3.94 9.48 22.42 0.21 -3.73 16 24 C -0.09 -2.97 5.77 -19.82 -0.11 -3.08 16 25 C -0.08 -3.02 3.97 29.28 0.12 -2.91 16 26 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.03 1.41 6.77 -2.39 -0.02 1.40 16 32 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 2.43 6.01 -2.39 -0.01 2.41 16 34 H 0.02 0.76 6.66 -2.39 -0.02 0.75 16 35 H 0.01 0.73 6.28 -2.39 -0.01 0.71 16 36 H 0.01 0.70 6.55 -2.39 -0.02 0.68 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.12 3.35 6.15 -2.39 -0.01 3.34 16 39 H 0.10 2.89 8.08 -2.39 -0.02 2.88 16 40 H 0.14 3.03 8.05 -2.91 -0.02 3.01 16 41 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.12 3.73 8.01 -2.91 -0.02 3.71 16 44 H 0.07 3.37 5.56 -2.39 -0.01 3.35 16 45 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -61.06 357.74 2.04 -59.02 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.96 Total: 20.52 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 3.98 Total: -41.71 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.69 Total: -79.00 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.24 Total: -5.11 kcal Total: -61.06 2.04 -59.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172200894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.446 kcal (2) G-P(sol) polarization free energy of solvation -61.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds