Wall clock time and date at job start Tue Mar 31 2020 08:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47464 * 2 1 4 4 C 1.53006 * 109.46879 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46748 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99947 * 265.50757 * 5 4 3 7 7 H 1.07996 * 119.99733 * 145.61825 * 6 5 4 8 8 C 1.38952 * 119.99591 * 325.61130 * 6 5 4 9 9 N 1.31403 * 120.00416 * 338.47308 * 8 6 5 10 10 Si 1.86802 * 119.99555 * 158.47194 * 8 6 5 11 11 H 1.48506 * 109.46911 * 90.00161 * 10 8 6 12 12 H 1.48503 * 109.46946 * 209.99762 * 10 8 6 13 13 H 1.48497 * 109.47470 * 330.00083 * 10 8 6 14 14 C 1.34774 * 119.99972 * 85.50212 * 5 4 3 15 15 O 1.21297 * 120.00308 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.99937 * 179.97438 * 14 5 4 17 17 H 1.09001 * 115.56153 * 325.70871 * 16 14 5 18 18 C 1.53000 * 117.49696 * 111.39764 * 16 14 5 19 19 C 1.52999 * 60.03002 * 107.47864 * 18 16 14 20 20 H 1.08997 * 117.49775 * 107.50615 * 19 18 16 21 21 C 1.50705 * 117.49564 * 252.52045 * 19 18 16 22 22 C 1.38218 * 120.01409 * 8.60662 * 21 19 18 23 23 C 1.38218 * 120.02768 * 179.97438 * 22 21 19 24 24 C 1.38269 * 120.04907 * 0.03326 * 23 22 21 25 25 C 1.38169 * 120.02679 * 359.97438 * 24 23 22 26 26 C 1.38436 * 120.00877 * 188.33625 * 21 19 18 27 27 F 1.35104 * 120.03021 * 0.02562 * 26 21 19 28 28 H 1.08997 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46617 * 300.00506 * 1 2 3 30 30 H 1.09007 * 109.47065 * 59.99600 * 1 2 3 31 31 H 1.09003 * 109.46543 * 240.00043 * 2 1 3 32 32 H 1.08998 * 109.47177 * 120.00193 * 2 1 3 33 33 H 1.08996 * 109.46947 * 60.00163 * 3 2 1 34 34 H 1.08998 * 109.47081 * 300.00252 * 3 2 1 35 35 H 1.08996 * 109.47346 * 60.00225 * 4 3 2 36 36 H 1.08997 * 109.46830 * 299.99727 * 4 3 2 37 37 H 0.96999 * 120.00418 * 179.97438 * 9 8 6 38 38 H 1.08996 * 117.49685 * 214.98208 * 18 16 14 39 39 H 1.08995 * 117.49766 * 359.97438 * 18 16 14 40 40 H 1.08001 * 119.98736 * 0.02562 * 22 21 19 41 41 H 1.08001 * 119.97816 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.98845 * 179.97438 * 24 23 22 43 43 H 1.08011 * 120.01621 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3742 3.4395 -1.1835 7 1 4.1966 4.4978 -1.3056 8 6 4.9228 2.7022 -2.2257 9 7 5.5253 1.5611 -1.9774 10 14 4.8037 3.3332 -3.9799 11 1 5.9873 4.1770 -4.2838 12 1 4.7620 2.1827 -4.9180 13 1 3.5673 4.1413 -4.1324 14 6 4.1974 3.4887 1.1639 15 8 3.9184 2.9436 2.2110 16 6 4.7003 4.9093 1.1646 17 1 5.4378 5.1475 0.3981 18 6 3.7120 6.0083 1.5599 19 6 4.8360 5.6102 2.5186 20 1 5.6627 6.3096 2.6429 21 6 4.4564 4.8268 3.7487 22 6 3.1700 4.3414 3.8896 23 6 2.8216 3.6223 5.0174 24 6 3.7593 3.3884 6.0064 25 6 5.0458 3.8727 5.8678 26 6 5.3976 4.5882 4.7355 27 9 6.6567 5.0580 4.5966 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9331 0.9286 -0.8908 36 1 3.9337 0.9283 0.8891 37 1 5.9080 1.0463 -2.7050 38 1 3.7994 6.9696 1.0535 39 1 2.6981 5.7039 1.8191 40 1 2.4368 4.5232 3.1177 41 1 1.8163 3.2430 5.1265 42 1 3.4859 2.8267 6.8875 43 1 5.7780 3.6902 6.6406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182285643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:26 Heat of formation + Delta-G solvation = -30.556478 kcal Electronic energy + Delta-G solvation = -25699.405776 eV Core-core repulsion = 22045.926863 eV Total energy + Delta-G solvation = -3653.478913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.39874 -39.65411 -38.05452 -36.21335 -34.81066 -33.95574 -31.54169 -30.25881 -29.92044 -28.52223 -24.96712 -24.25735 -23.62969 -22.09270 -21.70950 -20.48757 -20.05563 -18.95030 -17.60417 -16.55597 -16.29365 -15.66849 -15.17253 -15.06840 -14.82958 -14.71054 -14.24883 -13.99708 -13.78880 -13.60429 -13.32421 -12.79645 -12.67054 -12.38501 -12.22937 -12.02810 -11.91313 -11.70605 -11.34851 -11.25712 -11.04912 -10.92179 -10.62933 -10.55275 -10.50578 -10.35951 -10.25369 -10.18628 -9.85752 -9.72761 -9.14806 -8.70956 -8.11838 -7.63664 -7.50900 -6.40854 -4.07008 1.67342 1.79482 3.06671 3.18311 3.21704 3.58656 4.05443 4.15361 4.47653 4.63295 4.80762 4.96589 5.06969 5.17260 5.37027 5.43084 5.46741 5.47055 5.53513 5.64777 5.70907 5.79480 5.79752 6.01704 6.06051 6.22838 6.26501 6.30062 6.37485 6.40323 6.43284 6.53016 6.57272 6.62464 6.66544 6.73405 6.82292 6.85893 7.00292 7.12432 7.34349 7.42306 7.48393 7.90911 8.35763 9.04879 9.51777 9.94448 10.59678 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.005346 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.557668 B = 5236.465377 C = 6616.935065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.115 3.885 5 N -0.430 5.430 6 C -0.337 4.337 7 H 0.090 0.910 8 C 0.043 3.957 9 N -0.856 5.856 10 Si 0.911 3.089 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.489 3.511 15 O -0.587 6.587 16 C -0.136 4.136 17 H 0.125 0.875 18 C -0.154 4.154 19 C -0.106 4.106 20 H 0.113 0.887 21 C -0.059 4.059 22 C -0.010 4.010 23 C -0.142 4.142 24 C -0.099 4.099 25 C -0.171 4.171 26 C 0.096 3.904 27 F -0.147 7.147 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.270 0.730 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 3.728 6.995 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.009 4.009 5 N -0.147 5.147 6 C -0.465 4.465 7 H 0.108 0.892 8 C -0.163 4.163 9 N -0.493 5.493 10 Si 0.737 3.263 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.278 3.722 15 O -0.473 6.473 16 C -0.157 4.157 17 H 0.143 0.857 18 C -0.192 4.192 19 C -0.125 4.125 20 H 0.131 0.869 21 C -0.060 4.060 22 C -0.029 4.029 23 C -0.160 4.160 24 C -0.117 4.117 25 C -0.190 4.190 26 C 0.077 3.923 27 F -0.126 7.126 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.523 3.281 7.341 9.755 hybrid contribution 0.417 0.181 -1.243 1.323 sum -5.107 3.462 6.098 8.675 Atomic orbital electron populations 1.21753 0.96659 1.00660 1.01418 1.21427 0.94932 0.97812 1.01576 1.21884 0.97956 0.95404 1.01179 1.21435 0.91000 0.84845 1.03608 1.43445 1.54646 1.11845 1.04715 1.19431 1.41704 0.95376 0.90014 0.89186 1.25338 0.94251 0.96331 1.00403 1.69931 1.31467 1.14947 1.32933 0.86193 0.78990 0.78627 0.82447 1.20250 1.20713 1.19313 1.19453 0.81604 0.87335 0.83842 1.90562 1.56316 1.69597 1.30847 1.22231 1.03076 0.93212 0.97164 0.85686 1.22993 0.95221 0.98837 1.02101 1.20924 1.01333 1.01599 0.88603 0.86948 1.18854 0.93527 1.00107 0.93498 1.20561 0.94737 0.92800 0.94757 1.20932 0.99542 1.00888 0.94662 1.20757 0.92583 0.99345 0.99047 1.20831 0.97968 1.02456 0.97745 1.17396 0.79134 0.99635 0.96166 1.91424 1.38208 1.86833 1.96136 0.93443 0.93126 0.93069 0.92307 0.92441 0.92969 0.92474 0.87557 0.93071 0.92005 0.88223 0.88546 0.86161 0.86474 0.86209 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.13 -2.49 5.51 -26.73 -0.15 -2.64 16 4 C 0.11 2.68 4.91 -4.04 -0.02 2.66 16 5 N -0.43 -10.50 2.55 -114.81 -0.29 -10.79 16 6 C -0.34 -8.30 8.43 -14.93 -0.13 -8.43 16 7 H 0.09 2.12 7.16 -52.49 -0.38 1.74 16 8 C 0.04 1.05 4.94 -17.47 -0.09 0.97 16 9 N -0.86 -22.27 11.31 55.50 0.63 -21.65 16 10 Si 0.91 19.00 29.60 -169.99 -5.03 13.97 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 14 C 0.49 11.42 7.25 -10.98 -0.08 11.34 16 15 O -0.59 -14.21 11.36 5.54 0.06 -14.15 16 16 C -0.14 -2.70 5.00 -91.73 -0.46 -3.16 16 17 H 0.13 2.52 7.40 -51.93 -0.38 2.13 16 18 C -0.15 -2.47 9.57 -26.73 -0.26 -2.72 16 19 C -0.11 -1.87 5.80 -91.73 -0.53 -2.40 16 20 H 0.11 1.82 7.87 -51.93 -0.41 1.41 16 21 C -0.06 -1.09 4.37 -104.55 -0.46 -1.54 16 22 C -0.01 -0.18 6.17 -39.60 -0.24 -0.43 16 23 C -0.14 -2.25 10.04 -39.58 -0.40 -2.64 16 24 C -0.10 -1.47 10.04 -39.60 -0.40 -1.87 16 25 C -0.17 -2.73 10.03 -39.51 -0.40 -3.12 16 26 C 0.10 1.74 7.25 -39.42 -0.29 1.46 16 27 F -0.15 -2.70 16.62 2.25 0.04 -2.66 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.11 2.66 5.34 -51.93 -0.28 2.38 16 36 H 0.05 1.26 7.56 -51.93 -0.39 0.87 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.10 1.53 6.18 -51.93 -0.32 1.21 16 40 H 0.12 2.11 5.78 -52.49 -0.30 1.80 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -27.83 352.85 -9.20 -37.03 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.25 Total: 9.29 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -3.67 Total: -16.35 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.33 Total: -32.44 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.06 Total: -14.15 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.83 -9.20 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182285643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds