Wall clock time and date at job start Tue Mar 31 2020 08:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47464 * 2 1 4 4 C 1.53006 * 109.46879 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46748 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99947 * 265.50757 * 5 4 3 7 7 H 1.07996 * 119.99733 * 145.61825 * 6 5 4 8 8 C 1.38952 * 119.99591 * 325.61130 * 6 5 4 9 9 N 1.31403 * 120.00416 * 338.47308 * 8 6 5 10 10 Si 1.86802 * 119.99555 * 158.47194 * 8 6 5 11 11 H 1.48506 * 109.46911 * 90.00161 * 10 8 6 12 12 H 1.48503 * 109.46946 * 209.99762 * 10 8 6 13 13 H 1.48497 * 109.47470 * 330.00083 * 10 8 6 14 14 C 1.34774 * 119.99972 * 85.50212 * 5 4 3 15 15 O 1.21297 * 120.00308 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.99937 * 179.97438 * 14 5 4 17 17 H 1.09001 * 115.56153 * 325.70871 * 16 14 5 18 18 C 1.53000 * 117.49696 * 111.39764 * 16 14 5 19 19 C 1.52999 * 60.03002 * 107.47864 * 18 16 14 20 20 H 1.08997 * 117.49775 * 107.50615 * 19 18 16 21 21 C 1.50705 * 117.49564 * 252.52045 * 19 18 16 22 22 C 1.38218 * 120.01409 * 8.60662 * 21 19 18 23 23 C 1.38218 * 120.02768 * 179.97438 * 22 21 19 24 24 C 1.38269 * 120.04907 * 0.03326 * 23 22 21 25 25 C 1.38169 * 120.02679 * 359.97438 * 24 23 22 26 26 C 1.38436 * 120.00877 * 188.33625 * 21 19 18 27 27 F 1.35104 * 120.03021 * 0.02562 * 26 21 19 28 28 H 1.08997 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46617 * 300.00506 * 1 2 3 30 30 H 1.09007 * 109.47065 * 59.99600 * 1 2 3 31 31 H 1.09003 * 109.46543 * 240.00043 * 2 1 3 32 32 H 1.08998 * 109.47177 * 120.00193 * 2 1 3 33 33 H 1.08996 * 109.46947 * 60.00163 * 3 2 1 34 34 H 1.08998 * 109.47081 * 300.00252 * 3 2 1 35 35 H 1.08996 * 109.47346 * 60.00225 * 4 3 2 36 36 H 1.08997 * 109.46830 * 299.99727 * 4 3 2 37 37 H 0.96999 * 120.00418 * 179.97438 * 9 8 6 38 38 H 1.08996 * 117.49685 * 214.98208 * 18 16 14 39 39 H 1.08995 * 117.49766 * 359.97438 * 18 16 14 40 40 H 1.08001 * 119.98736 * 0.02562 * 22 21 19 41 41 H 1.08001 * 119.97816 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.98845 * 179.97438 * 24 23 22 43 43 H 1.08011 * 120.01621 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3742 3.4395 -1.1835 7 1 4.1966 4.4978 -1.3056 8 6 4.9228 2.7022 -2.2257 9 7 5.5253 1.5611 -1.9774 10 14 4.8037 3.3332 -3.9799 11 1 5.9873 4.1770 -4.2838 12 1 4.7620 2.1827 -4.9180 13 1 3.5673 4.1413 -4.1324 14 6 4.1974 3.4887 1.1639 15 8 3.9184 2.9436 2.2110 16 6 4.7003 4.9093 1.1646 17 1 5.4378 5.1475 0.3981 18 6 3.7120 6.0083 1.5599 19 6 4.8360 5.6102 2.5186 20 1 5.6627 6.3096 2.6429 21 6 4.4564 4.8268 3.7487 22 6 3.1700 4.3414 3.8896 23 6 2.8216 3.6223 5.0174 24 6 3.7593 3.3884 6.0064 25 6 5.0458 3.8727 5.8678 26 6 5.3976 4.5882 4.7355 27 9 6.6567 5.0580 4.5966 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9331 0.9286 -0.8908 36 1 3.9337 0.9283 0.8891 37 1 5.9080 1.0463 -2.7050 38 1 3.7994 6.9696 1.0535 39 1 2.6981 5.7039 1.8191 40 1 2.4368 4.5232 3.1177 41 1 1.8163 3.2430 5.1265 42 1 3.4859 2.8267 6.8875 43 1 5.7780 3.6902 6.6406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182285643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:25 Heat of formation + Delta-G solvation = -41.969173 kcal Electronic energy + Delta-G solvation = -25699.900668 eV Core-core repulsion = 22045.926863 eV Total energy + Delta-G solvation = -3653.973805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.78372 -41.20560 -39.55968 -37.71586 -36.48433 -35.52826 -33.38975 -31.56725 -31.20550 -30.06509 -26.83740 -25.76418 -24.94717 -23.46425 -23.15961 -21.95905 -21.48824 -20.73002 -19.05482 -18.16436 -17.89884 -17.14654 -16.62408 -16.55763 -16.43645 -16.18350 -15.82752 -15.60957 -15.22251 -14.96589 -14.82140 -14.22650 -14.01157 -13.94187 -13.76315 -13.53195 -13.27572 -13.08196 -12.96120 -12.89262 -12.66764 -12.21044 -12.16973 -12.05058 -11.95931 -11.83130 -11.79357 -11.55433 -11.41565 -11.30688 -10.94582 -10.36670 -9.50071 -9.35431 -9.08636 -8.27542 -5.99741 0.36870 0.50643 1.40870 1.48081 1.59023 1.95199 2.32311 2.74774 2.93320 3.02923 3.21466 3.50513 3.69903 3.88704 3.98733 4.07655 4.09528 4.19029 4.20902 4.31156 4.35543 4.50856 4.52341 4.57175 4.68147 4.84928 4.87360 4.89765 4.97493 5.00987 5.07712 5.12875 5.17782 5.19632 5.27572 5.36492 5.37826 5.44800 5.47955 5.58381 5.61201 5.71031 6.05960 6.15864 6.47437 7.16476 7.68020 8.10428 8.73822 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.005346 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.557668 B = 5236.465377 C = 6616.935065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.110 4.110 4 C 0.118 3.882 5 N -0.448 5.448 6 C -0.348 4.348 7 H 0.098 0.902 8 C 0.000 4.000 9 N -0.894 5.894 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.480 3.520 15 O -0.601 6.601 16 C -0.166 4.166 17 H 0.117 0.883 18 C -0.123 4.123 19 C -0.103 4.103 20 H 0.124 0.876 21 C -0.081 4.081 22 C -0.027 4.027 23 C -0.146 4.146 24 C -0.094 4.094 25 C -0.174 4.174 26 C 0.068 3.932 27 F -0.155 7.155 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.270 0.730 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 4.393 7.397 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.149 4.149 4 C -0.005 4.005 5 N -0.165 5.165 6 C -0.475 4.475 7 H 0.116 0.884 8 C -0.203 4.203 9 N -0.532 5.532 10 Si 0.803 3.197 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.183 1.183 14 C 0.270 3.730 15 O -0.488 6.488 16 C -0.186 4.186 17 H 0.135 0.865 18 C -0.160 4.160 19 C -0.122 4.122 20 H 0.142 0.858 21 C -0.082 4.082 22 C -0.045 4.045 23 C -0.165 4.165 24 C -0.112 4.112 25 C -0.193 4.193 26 C 0.049 3.951 27 F -0.134 7.134 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.003 3.961 7.756 11.175 hybrid contribution 0.900 -0.056 -1.223 1.519 sum -6.103 3.905 6.533 9.756 Atomic orbital electron populations 1.21699 0.94003 1.02294 1.01836 1.21406 0.97203 0.95348 1.01460 1.21725 0.95265 0.97544 1.00356 1.21338 0.93264 0.84601 1.01313 1.43698 1.55453 1.12096 1.05246 1.19733 1.41597 0.95899 0.90296 0.88436 1.26161 0.93679 0.96449 1.03972 1.70044 1.32771 1.16391 1.33981 0.85157 0.79185 0.77931 0.77468 1.19916 1.20864 1.18325 1.20056 0.80906 0.88672 0.83351 1.90538 1.56721 1.70421 1.31169 1.22102 1.05244 0.92321 0.98975 0.86494 1.23132 0.94461 0.98425 0.99990 1.21032 1.02504 1.01067 0.87566 0.85811 1.19055 0.94123 1.01028 0.94013 1.20653 0.94506 0.93739 0.95582 1.21314 1.00995 0.99950 0.94195 1.21202 0.91712 0.98470 0.99839 1.21213 0.99125 1.01447 0.97477 1.17767 0.79023 1.00924 0.97369 1.91396 1.38592 1.87085 1.96280 0.91220 0.92746 0.92626 0.92432 0.92607 0.93792 0.92972 0.89335 0.95596 0.92022 0.84920 0.88357 0.86708 0.84197 0.82486 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.81 5.93 30.59 0.18 -3.63 16 3 C -0.11 -4.44 5.51 30.60 0.17 -4.27 16 4 C 0.12 5.76 4.91 86.38 0.42 6.18 16 5 N -0.45 -22.49 2.55 -635.52 -1.62 -24.11 16 6 C -0.35 -17.36 8.43 84.04 0.71 -16.66 16 7 H 0.10 4.60 7.16 -2.91 -0.02 4.58 16 8 C 0.00 -0.01 4.94 84.93 0.42 0.41 16 9 N -0.89 -47.81 11.31 21.66 0.24 -47.56 16 10 Si 0.98 39.04 29.60 68.60 2.03 41.07 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 14 C 0.48 22.97 7.25 87.66 0.64 23.61 16 15 O -0.60 -29.81 11.36 -3.08 -0.03 -29.85 16 16 C -0.17 -6.63 5.00 -11.52 -0.06 -6.69 16 17 H 0.12 4.80 7.40 -2.39 -0.02 4.78 16 18 C -0.12 -3.78 9.57 30.59 0.29 -3.49 16 19 C -0.10 -3.60 5.80 -11.52 -0.07 -3.67 16 20 H 0.12 3.94 7.87 -2.39 -0.02 3.92 16 21 C -0.08 -2.99 4.37 -19.82 -0.09 -3.07 16 22 C -0.03 -0.93 6.17 22.26 0.14 -0.79 16 23 C -0.15 -4.39 10.04 22.27 0.22 -4.17 16 24 C -0.09 -2.57 10.04 22.26 0.22 -2.35 16 25 C -0.17 -5.27 10.03 22.31 0.22 -5.05 16 26 C 0.07 2.46 7.25 22.38 0.16 2.62 16 27 F -0.15 -5.68 16.62 44.97 0.75 -4.94 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 4.63 5.34 -2.39 -0.01 4.62 16 36 H 0.03 1.34 7.56 -2.39 -0.02 1.32 16 37 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 38 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.10 3.00 6.18 -2.39 -0.01 2.99 16 40 H 0.12 4.02 5.78 -2.91 -0.02 4.00 16 41 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -61.63 352.85 6.68 -54.96 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 1.01 Total: 34.36 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.30 Total: -23.92 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.38 Total: -71.68 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.03 Total: -29.85 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.75 Total: -4.94 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -61.63 6.68 -54.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182285643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.990 kcal (2) G-P(sol) polarization free energy of solvation -61.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds