Wall clock time and date at job start Tue Mar 31 2020 08:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47220 * 2 1 4 4 C 1.53000 * 109.47348 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47465 * 179.97438 * 4 3 2 6 6 C 1.37088 * 120.00320 * 270.28241 * 5 4 3 7 7 H 1.07997 * 120.00555 * 138.41910 * 6 5 4 8 8 C 1.38957 * 120.00055 * 318.41594 * 6 5 4 9 9 N 1.31411 * 119.99603 * 352.87889 * 8 6 5 10 10 Si 1.86800 * 120.00420 * 172.87217 * 8 6 5 11 11 H 1.48500 * 109.46662 * 59.99943 * 10 8 6 12 12 H 1.48490 * 109.47326 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47041 * 300.00704 * 10 8 6 14 14 C 1.34777 * 119.99404 * 90.00150 * 5 4 3 15 15 O 1.21290 * 120.00186 * 355.42225 * 14 5 4 16 16 C 1.50699 * 119.99570 * 175.42336 * 14 5 4 17 17 H 1.08998 * 115.55535 * 331.74542 * 16 14 5 18 18 C 1.53006 * 117.49960 * 117.42080 * 16 14 5 19 19 C 1.53006 * 117.49644 * 186.07739 * 16 14 5 20 20 H 1.08996 * 117.49848 * 0.02562 * 19 16 14 21 21 C 1.50698 * 117.49557 * 144.99627 * 19 16 14 22 22 C 1.38220 * 120.01447 * 59.73120 * 21 19 16 23 23 C 1.38229 * 120.02749 * 179.72048 * 22 21 19 24 24 C 1.38264 * 120.04959 * 0.54888 * 23 22 21 25 25 C 1.38182 * 120.02696 * 359.72673 * 24 23 22 26 26 C 1.38439 * 120.01390 * 240.00109 * 21 19 16 27 27 F 1.35103 * 120.02665 * 359.97438 * 26 21 19 28 28 H 1.08994 * 109.47449 * 300.00221 * 1 2 3 29 29 H 1.09006 * 109.47100 * 60.00471 * 1 2 3 30 30 H 1.09007 * 109.47502 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47057 * 239.99838 * 2 1 3 32 32 H 1.09000 * 109.46952 * 119.99918 * 2 1 3 33 33 H 1.09001 * 109.47238 * 59.99949 * 3 2 1 34 34 H 1.09000 * 109.47091 * 299.99833 * 3 2 1 35 35 H 1.09001 * 109.46732 * 59.99958 * 4 3 2 36 36 H 1.09000 * 109.47149 * 300.00117 * 4 3 2 37 37 H 0.97002 * 119.99878 * 185.00140 * 9 8 6 38 38 H 1.08999 * 117.50042 * 214.97769 * 18 16 14 39 39 H 1.09002 * 117.49547 * 359.97438 * 18 16 14 40 40 H 1.08000 * 119.98814 * 359.97438 * 22 21 19 41 41 H 1.07995 * 119.97641 * 180.25105 * 23 22 21 42 42 H 1.07997 * 119.99189 * 179.74867 * 24 23 22 43 43 H 1.07996 * 120.01426 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2819 3.4712 -1.1874 7 1 3.9882 4.5040 -1.3030 8 6 4.8864 2.7987 -2.2425 9 7 5.3700 1.5904 -2.0605 10 14 5.0115 3.6120 -3.9195 11 1 5.7912 4.8704 -3.8023 12 1 5.6933 2.6929 -4.8658 13 1 3.6489 3.9192 -4.4235 14 6 4.2825 3.4596 1.1670 15 8 4.0018 2.9191 2.2159 16 6 4.8819 4.8423 1.1686 17 1 5.5281 5.0755 0.3224 18 6 4.0350 5.9787 1.7450 19 6 5.2439 5.4538 2.5236 20 1 5.0489 4.8558 3.4138 21 6 6.4666 6.3323 2.5861 22 6 6.5391 7.4726 1.8083 23 6 7.6582 8.2818 1.8697 24 6 8.7109 7.9456 2.7005 25 6 8.6432 6.8031 3.4748 26 6 7.5202 5.9947 3.4183 27 9 7.4525 4.8777 4.1753 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9562 -0.8900 35 1 3.9336 0.9285 -0.8891 36 1 3.9329 0.9288 0.8908 37 1 5.8558 1.1498 -2.7752 38 1 4.1243 6.9597 1.2783 39 1 3.0441 5.7263 2.1227 40 1 5.7194 7.7337 1.1554 41 1 7.7122 9.1747 1.2646 42 1 9.5865 8.5763 2.7447 43 1 9.4654 6.5409 4.1240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182285646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:29 Heat of formation + Delta-G solvation = -43.698738 kcal Electronic energy + Delta-G solvation = -24863.167355 eV Core-core repulsion = 21209.118551 eV Total energy + Delta-G solvation = -3654.048804 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.63724 -39.55934 -38.48672 -36.27272 -34.89434 -33.89381 -31.45079 -30.63817 -30.33522 -28.46870 -24.96839 -24.33023 -23.78343 -22.39223 -21.66597 -20.45436 -20.08762 -18.96835 -17.66633 -17.01996 -16.18522 -16.00254 -15.50704 -15.35231 -14.74235 -14.61054 -14.43026 -14.11987 -13.92440 -13.69610 -13.29779 -12.96308 -12.82264 -12.36570 -12.27334 -12.12757 -12.02647 -11.68584 -11.41551 -11.21486 -11.15825 -11.00637 -10.89309 -10.57102 -10.47833 -10.33136 -10.26343 -10.21860 -9.86481 -9.67282 -9.10333 -8.82997 -8.50830 -8.28352 -7.43091 -6.31882 -4.15056 1.22326 1.25868 3.09459 3.18045 3.18707 3.48851 3.77866 4.06229 4.35327 4.54042 4.58119 4.81024 4.90141 4.98498 5.06632 5.26175 5.38027 5.41823 5.48745 5.53504 5.59296 5.71045 5.74632 5.98039 6.00801 6.11660 6.13711 6.23200 6.28820 6.31526 6.32580 6.42208 6.44458 6.50065 6.58611 6.68058 6.76876 6.81362 6.91075 6.96844 7.20643 7.34596 7.63658 8.01018 8.41149 9.06924 9.52612 9.95847 10.66008 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.004381 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.661887 B = 6389.445914 C = 7666.148150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.106 3.894 5 N -0.434 5.434 6 C -0.331 4.331 7 H 0.087 0.913 8 C 0.044 3.956 9 N -0.869 5.869 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.603 6.603 16 C -0.129 4.129 17 H 0.125 0.875 18 C -0.150 4.150 19 C -0.108 4.108 20 H 0.124 0.876 21 C -0.070 4.070 22 C -0.094 4.094 23 C -0.129 4.129 24 C -0.104 4.104 25 C -0.155 4.155 26 C 0.104 3.896 27 F -0.135 7.135 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.048 0.952 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 9.394 3.758 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.017 4.017 5 N -0.150 5.150 6 C -0.459 4.459 7 H 0.104 0.896 8 C -0.161 4.161 9 N -0.506 5.506 10 Si 0.745 3.255 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.286 3.714 15 O -0.490 6.490 16 C -0.150 4.150 17 H 0.143 0.857 18 C -0.187 4.187 19 C -0.127 4.127 20 H 0.141 0.859 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.147 4.147 24 C -0.122 4.122 25 C -0.174 4.174 26 C 0.085 3.915 27 F -0.113 7.113 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.515 8.857 4.120 9.886 hybrid contribution 0.220 0.153 -0.873 0.914 sum 1.736 9.011 3.247 9.734 Atomic orbital electron populations 1.21758 0.96752 1.00601 1.01410 1.21425 0.94854 0.97884 1.01564 1.21880 0.98156 0.95310 1.01064 1.21660 0.91053 0.84937 1.04042 1.43317 1.55542 1.11993 1.04178 1.19398 1.39792 0.97567 0.89144 0.89556 1.25504 0.94883 0.95698 1.00064 1.69634 1.33885 1.12976 1.34109 0.86138 0.78698 0.79050 0.81658 1.19714 1.20827 1.19758 1.19488 0.81047 0.86864 0.84018 1.90521 1.57524 1.68883 1.32058 1.22258 1.03022 0.93673 0.96042 0.85689 1.22998 0.95433 0.97544 1.02747 1.20943 0.92805 1.01110 0.97806 0.85851 1.19336 0.94601 0.96290 0.96887 1.21017 0.98594 0.93384 0.98168 1.21149 0.93781 1.00180 0.99592 1.20932 0.98867 0.96235 0.96147 1.21102 0.97576 0.96152 1.02539 1.17549 0.95396 0.84847 0.93724 1.91512 1.96517 1.49595 1.73689 0.93156 0.93074 0.93477 0.92206 0.92513 0.93268 0.92401 0.86342 0.93308 0.91825 0.88371 0.88288 0.84776 0.85512 0.85387 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.15 0.37 -1.80 16 2 C -0.12 -2.08 5.93 -26.74 -0.16 -2.24 16 3 C -0.13 -2.64 5.54 -26.73 -0.15 -2.78 16 4 C 0.11 2.60 4.96 -4.04 -0.02 2.58 16 5 N -0.43 -11.03 2.52 -114.81 -0.29 -11.32 16 6 C -0.33 -8.27 8.16 -14.93 -0.12 -8.40 16 7 H 0.09 2.05 7.50 -52.49 -0.39 1.66 16 8 C 0.04 1.08 5.25 -17.47 -0.09 0.99 16 9 N -0.87 -22.74 10.92 55.50 0.61 -22.13 16 10 Si 0.92 19.15 29.56 -169.99 -5.03 14.13 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.50 12.40 7.40 -10.99 -0.08 12.32 16 15 O -0.60 -16.37 15.90 5.55 0.09 -16.28 16 16 C -0.13 -2.66 4.81 -91.77 -0.44 -3.10 16 17 H 0.13 2.61 7.40 -51.93 -0.38 2.22 16 18 C -0.15 -2.49 9.57 -26.69 -0.26 -2.74 16 19 C -0.11 -1.97 5.31 -91.73 -0.49 -2.46 16 20 H 0.12 2.50 7.40 -51.93 -0.38 2.11 16 21 C -0.07 -1.12 5.62 -104.56 -0.59 -1.71 16 22 C -0.09 -1.24 9.29 -39.59 -0.37 -1.61 16 23 C -0.13 -1.44 10.04 -39.58 -0.40 -1.83 16 24 C -0.10 -1.12 10.04 -39.59 -0.40 -1.52 16 25 C -0.15 -1.96 10.03 -39.51 -0.40 -2.36 16 26 C 0.10 1.65 7.25 -39.42 -0.29 1.37 16 27 F -0.13 -2.39 16.61 2.25 0.04 -2.35 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.12 3.06 5.24 -51.93 -0.27 2.78 16 36 H 0.05 1.25 7.49 -51.93 -0.39 0.86 16 37 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 38 H 0.10 1.32 6.19 -51.93 -0.32 1.00 16 39 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.13 1.58 6.03 -52.49 -0.32 1.26 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -29.33 360.82 -9.26 -38.59 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.25 Total: 9.22 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -3.87 Total: -15.30 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.32 Total: -33.45 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.09 Total: -16.28 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.33 -9.26 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182285646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.108 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds