Wall clock time and date at job start Tue Mar 31 2020 08:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47259 * 2 1 4 4 C 1.52998 * 109.47259 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00232 * 263.63293 * 5 4 3 7 7 H 1.07999 * 120.00498 * 141.98135 * 6 5 4 8 8 C 1.38950 * 119.99941 * 321.98643 * 6 5 4 9 9 N 1.31416 * 120.00436 * 157.95380 * 8 6 5 10 10 Si 1.86808 * 119.99909 * 337.95307 * 8 6 5 11 11 H 1.48496 * 109.46902 * 95.69120 * 10 8 6 12 12 H 1.48499 * 109.47197 * 215.69220 * 10 8 6 13 13 H 1.48495 * 109.46834 * 335.69115 * 10 8 6 14 14 C 1.34782 * 120.00213 * 83.63443 * 5 4 3 15 15 O 1.21285 * 119.99699 * 359.97438 * 14 5 4 16 16 C 1.50702 * 120.00001 * 180.02562 * 14 5 4 17 17 H 1.08999 * 115.56334 * 34.31129 * 16 14 5 18 18 C 1.52993 * 117.49822 * 248.62008 * 16 14 5 19 19 C 1.52995 * 117.49457 * 179.97438 * 16 14 5 20 20 H 1.08998 * 117.52547 * 0.02562 * 19 16 14 21 21 C 1.50706 * 117.49678 * 214.97844 * 19 16 14 22 22 C 1.38221 * 120.01331 * 299.98815 * 21 19 16 23 23 C 1.38219 * 120.02354 * 180.30176 * 22 21 19 24 24 C 1.38271 * 120.05285 * 359.44514 * 23 22 21 25 25 C 1.38175 * 120.02212 * 0.55208 * 24 23 22 26 26 C 1.38436 * 120.01332 * 120.01342 * 21 19 16 27 27 F 1.35107 * 120.02221 * 359.97438 * 26 21 19 28 28 H 1.09004 * 109.47417 * 300.00216 * 1 2 3 29 29 H 1.08998 * 109.46839 * 60.00272 * 1 2 3 30 30 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47203 * 239.99201 * 2 1 3 32 32 H 1.09004 * 109.47151 * 119.99441 * 2 1 3 33 33 H 1.08994 * 109.47197 * 59.99735 * 3 2 1 34 34 H 1.09004 * 109.46583 * 299.99789 * 3 2 1 35 35 H 1.09004 * 109.47388 * 59.99229 * 4 3 2 36 36 H 1.08998 * 109.46839 * 299.99728 * 4 3 2 37 37 H 0.96998 * 120.00121 * 179.97438 * 9 8 6 38 38 H 1.08995 * 117.50392 * 145.02618 * 18 16 14 39 39 H 1.09007 * 117.51808 * 359.97438 * 18 16 14 40 40 H 1.08000 * 119.98462 * 0.02562 * 22 21 19 41 41 H 1.08003 * 119.97410 * 179.72550 * 23 22 21 42 42 H 1.07993 * 119.98776 * 180.28082 * 24 23 22 43 43 H 1.07997 * 120.01159 * 179.73995 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.4105 3.4257 -1.1815 7 1 4.1838 4.4690 -1.3443 8 6 5.0590 2.6936 -2.1685 9 7 5.0168 3.0949 -3.4192 10 14 5.9911 1.1387 -1.7176 11 1 5.1172 -0.0424 -1.9333 12 1 7.2010 1.0218 -2.5707 13 1 6.3960 1.2007 -0.2902 14 6 4.1615 3.5025 1.1585 15 8 3.8495 2.9700 2.2026 16 6 4.6633 4.9235 1.1578 17 1 4.3849 5.5202 0.2891 18 6 6.0315 5.1898 1.7886 19 6 4.7570 5.6402 2.5062 20 1 4.4561 5.0842 3.3941 21 6 4.4577 7.1171 2.5315 22 6 5.2174 7.9895 1.7751 23 6 4.9471 9.3447 1.8030 24 6 3.9093 9.8280 2.5784 25 6 3.1484 8.9577 3.3353 26 6 3.4220 7.6004 3.3127 27 9 2.6788 6.7485 4.0524 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.4699 2.5839 -4.1080 38 1 6.6532 5.9617 1.3351 39 1 6.5688 4.3375 2.2046 40 1 6.0254 7.6126 1.1656 41 1 5.5441 10.0262 1.2151 42 1 3.6961 10.8866 2.5959 43 1 2.3406 9.3359 3.9442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182285647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:32 Heat of formation + Delta-G solvation = -35.355563 kcal Electronic energy + Delta-G solvation = -24940.634627 eV Core-core repulsion = 21286.947610 eV Total energy + Delta-G solvation = -3653.687017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.69058 -39.68260 -38.70188 -36.45154 -35.08378 -34.02460 -31.89763 -30.69039 -30.37745 -28.72049 -25.08991 -24.39013 -23.90179 -22.51717 -21.92718 -20.68993 -20.28562 -18.88489 -17.70603 -17.05884 -16.43999 -16.05817 -15.71218 -15.40827 -15.15087 -14.82260 -14.34011 -14.28136 -14.09125 -13.71421 -13.24275 -13.09217 -12.97708 -12.67021 -12.41845 -12.39674 -12.12711 -11.98422 -11.53619 -11.40359 -11.29382 -11.14827 -10.98101 -10.68176 -10.60340 -10.41137 -10.34306 -10.02578 -9.92351 -9.78360 -9.20761 -8.87770 -8.64423 -8.35634 -7.81085 -6.51367 -4.10026 1.18456 1.22693 3.02336 3.18520 3.27660 3.42196 3.65642 4.09579 4.21809 4.32518 4.47605 4.75035 4.84377 4.89509 4.97729 5.19014 5.34509 5.35618 5.37500 5.41049 5.49777 5.54711 5.60629 5.81544 5.93990 5.99415 6.05550 6.12550 6.14418 6.17748 6.21020 6.24449 6.27335 6.27977 6.39454 6.42391 6.51349 6.54913 6.68449 6.80997 6.91936 6.93395 7.35113 8.03851 8.21595 8.93084 9.32524 9.66341 10.59229 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004426 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.411108 B = 6324.848518 C = 7498.020568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.127 4.127 4 C 0.105 3.895 5 N -0.458 5.458 6 C -0.343 4.343 7 H 0.104 0.896 8 C 0.069 3.931 9 N -0.859 5.859 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.506 3.494 15 O -0.595 6.595 16 C -0.128 4.128 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.110 4.110 20 H 0.124 0.876 21 C -0.072 4.072 22 C -0.093 4.093 23 C -0.128 4.128 24 C -0.103 4.103 25 C -0.155 4.155 26 C 0.103 3.897 27 F -0.135 7.135 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.275 0.725 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 7.546 7.555 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.018 4.018 5 N -0.177 5.177 6 C -0.470 4.470 7 H 0.121 0.879 8 C -0.138 4.138 9 N -0.494 5.494 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.295 3.705 15 O -0.480 6.480 16 C -0.148 4.148 17 H 0.142 0.858 18 C -0.179 4.179 19 C -0.129 4.129 20 H 0.142 0.858 21 C -0.073 4.073 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.121 4.121 25 C -0.174 4.174 26 C 0.084 3.916 27 F -0.114 7.114 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.180 7.201 7.853 10.720 hybrid contribution 0.355 -0.916 -0.094 0.987 sum -0.825 6.286 7.759 10.019 Atomic orbital electron populations 1.21739 0.96165 1.00864 1.01763 1.21476 0.95599 0.97453 1.01566 1.21854 0.96007 0.96052 1.02597 1.21629 0.94076 0.85133 1.00981 1.43656 1.56254 1.11579 1.06185 1.19040 1.38725 0.98475 0.90725 0.87854 1.25306 0.95856 0.98011 0.94615 1.69769 1.39739 1.40251 0.99628 0.86999 0.80042 0.83212 0.79789 1.20091 1.21397 1.18573 1.19446 0.80702 0.87179 0.83168 1.90542 1.54949 1.70603 1.31949 1.22139 1.01038 0.95877 0.95789 0.85783 1.22972 0.89854 1.02912 1.02165 1.20991 1.03351 0.90400 0.98148 0.85783 1.19321 0.95435 0.95059 0.97456 1.21055 0.99270 0.92751 0.97987 1.21172 0.98243 0.95420 0.99777 1.20946 0.95289 0.99510 0.96355 1.21096 1.02241 0.91468 1.02613 1.17541 0.92191 0.87521 0.94356 1.91509 1.75001 1.70304 1.74575 0.92902 0.92785 0.93281 0.92283 0.92308 0.91805 0.91357 0.91361 0.91853 0.91498 0.88034 0.88224 0.84617 0.85423 0.85354 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.51 5.49 -26.73 -0.15 -2.65 16 4 C 0.10 2.35 3.92 -4.05 -0.02 2.33 16 5 N -0.46 -11.05 2.18 -114.82 -0.25 -11.30 16 6 C -0.34 -8.77 9.08 -14.93 -0.14 -8.91 16 7 H 0.10 2.75 6.78 -52.49 -0.36 2.40 16 8 C 0.07 1.80 5.26 -17.47 -0.09 1.71 16 9 N -0.86 -23.23 13.96 55.50 0.77 -22.46 16 10 Si 0.87 20.26 25.05 -169.99 -4.26 16.00 16 11 H -0.27 -6.14 6.70 56.52 0.38 -5.76 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.51 11.91 7.37 -10.98 -0.08 11.83 16 15 O -0.60 -15.06 15.95 5.55 0.09 -14.97 16 16 C -0.13 -2.54 4.93 -91.78 -0.45 -2.99 16 17 H 0.12 2.48 6.81 -51.93 -0.35 2.13 16 18 C -0.14 -2.35 9.56 -26.71 -0.26 -2.61 16 19 C -0.11 -1.93 5.31 -91.75 -0.49 -2.41 16 20 H 0.12 2.38 7.39 -51.93 -0.38 1.99 16 21 C -0.07 -1.10 5.62 -104.55 -0.59 -1.69 16 22 C -0.09 -1.20 9.30 -39.59 -0.37 -1.57 16 23 C -0.13 -1.39 10.04 -39.58 -0.40 -1.78 16 24 C -0.10 -1.07 10.04 -39.59 -0.40 -1.47 16 25 C -0.16 -1.87 10.03 -39.52 -0.40 -2.27 16 26 C 0.10 1.55 7.25 -39.42 -0.29 1.27 16 27 F -0.14 -2.27 16.61 2.25 0.04 -2.23 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.56 3.66 -51.93 -0.19 1.37 16 36 H 0.06 1.41 7.62 -51.93 -0.40 1.02 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 38 H 0.10 1.41 6.18 -51.93 -0.32 1.08 16 39 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.14 1.60 6.02 -52.49 -0.32 1.28 16 41 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -29.29 355.78 -8.26 -37.55 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.12 Total: 7.09 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.89 Total: -15.04 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.52 Total: -33.76 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.26 Total: 16.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.29 -8.26 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182285647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.193 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds