Wall clock time and date at job start Tue Mar 31 2020 08:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47259 * 2 1 4 4 C 1.52998 * 109.47259 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47270 * 179.97438 * 4 3 2 6 6 C 1.37097 * 120.00232 * 263.63293 * 5 4 3 7 7 H 1.07999 * 120.00498 * 141.98135 * 6 5 4 8 8 C 1.38950 * 119.99941 * 321.98643 * 6 5 4 9 9 N 1.31416 * 120.00436 * 157.95380 * 8 6 5 10 10 Si 1.86808 * 119.99909 * 337.95307 * 8 6 5 11 11 H 1.48496 * 109.46902 * 95.69120 * 10 8 6 12 12 H 1.48499 * 109.47197 * 215.69220 * 10 8 6 13 13 H 1.48495 * 109.46834 * 335.69115 * 10 8 6 14 14 C 1.34782 * 120.00213 * 83.63443 * 5 4 3 15 15 O 1.21285 * 119.99699 * 359.97438 * 14 5 4 16 16 C 1.50702 * 120.00001 * 180.02562 * 14 5 4 17 17 H 1.08999 * 115.56334 * 34.31129 * 16 14 5 18 18 C 1.52993 * 117.49822 * 248.62008 * 16 14 5 19 19 C 1.52995 * 117.49457 * 179.97438 * 16 14 5 20 20 H 1.08998 * 117.52547 * 0.02562 * 19 16 14 21 21 C 1.50706 * 117.49678 * 214.97844 * 19 16 14 22 22 C 1.38221 * 120.01331 * 299.98815 * 21 19 16 23 23 C 1.38219 * 120.02354 * 180.30176 * 22 21 19 24 24 C 1.38271 * 120.05285 * 359.44514 * 23 22 21 25 25 C 1.38175 * 120.02212 * 0.55208 * 24 23 22 26 26 C 1.38436 * 120.01332 * 120.01342 * 21 19 16 27 27 F 1.35107 * 120.02221 * 359.97438 * 26 21 19 28 28 H 1.09004 * 109.47417 * 300.00216 * 1 2 3 29 29 H 1.08998 * 109.46839 * 60.00272 * 1 2 3 30 30 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47203 * 239.99201 * 2 1 3 32 32 H 1.09004 * 109.47151 * 119.99441 * 2 1 3 33 33 H 1.08994 * 109.47197 * 59.99735 * 3 2 1 34 34 H 1.09004 * 109.46583 * 299.99789 * 3 2 1 35 35 H 1.09004 * 109.47388 * 59.99229 * 4 3 2 36 36 H 1.08998 * 109.46839 * 299.99728 * 4 3 2 37 37 H 0.96998 * 120.00121 * 179.97438 * 9 8 6 38 38 H 1.08995 * 117.50392 * 145.02618 * 18 16 14 39 39 H 1.09007 * 117.51808 * 359.97438 * 18 16 14 40 40 H 1.08000 * 119.98462 * 0.02562 * 22 21 19 41 41 H 1.08003 * 119.97410 * 179.72550 * 23 22 21 42 42 H 1.07993 * 119.98776 * 180.28082 * 24 23 22 43 43 H 1.07997 * 120.01159 * 179.73995 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.4105 3.4257 -1.1815 7 1 4.1838 4.4690 -1.3443 8 6 5.0590 2.6936 -2.1685 9 7 5.0168 3.0949 -3.4192 10 14 5.9911 1.1387 -1.7176 11 1 5.1172 -0.0424 -1.9333 12 1 7.2010 1.0218 -2.5707 13 1 6.3960 1.2007 -0.2902 14 6 4.1615 3.5025 1.1585 15 8 3.8495 2.9700 2.2026 16 6 4.6633 4.9235 1.1578 17 1 4.3849 5.5202 0.2891 18 6 6.0315 5.1898 1.7886 19 6 4.7570 5.6402 2.5062 20 1 4.4561 5.0842 3.3941 21 6 4.4577 7.1171 2.5315 22 6 5.2174 7.9895 1.7751 23 6 4.9471 9.3447 1.8030 24 6 3.9093 9.8280 2.5784 25 6 3.1484 8.9577 3.3353 26 6 3.4220 7.6004 3.3127 27 9 2.6788 6.7485 4.0524 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.4699 2.5839 -4.1080 38 1 6.6532 5.9617 1.3351 39 1 6.5688 4.3375 2.2046 40 1 6.0254 7.6126 1.1656 41 1 5.5441 10.0262 1.2151 42 1 3.6961 10.8866 2.5959 43 1 2.3406 9.3359 3.9442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182285647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:31 Heat of formation + Delta-G solvation = -49.279672 kcal Electronic energy + Delta-G solvation = -24941.238421 eV Core-core repulsion = 21286.947610 eV Total energy + Delta-G solvation = -3654.290812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.87791 -41.22494 -40.02913 -37.93226 -36.77292 -35.64261 -33.85949 -31.74145 -31.36912 -30.24532 -27.01180 -25.93755 -25.05388 -23.76843 -23.24477 -22.15528 -21.52370 -20.75992 -18.96045 -18.67174 -18.12998 -17.24549 -17.20252 -16.71406 -16.58990 -16.26398 -16.00399 -15.92276 -15.12253 -15.04064 -14.83395 -14.66897 -14.39313 -14.14169 -13.96666 -13.56571 -13.44185 -13.37608 -13.12727 -12.99780 -12.84995 -12.36911 -12.23415 -12.13808 -12.09055 -11.95795 -11.82430 -11.65168 -11.48780 -11.36557 -11.09558 -10.53865 -9.83227 -9.76986 -9.47936 -8.53230 -6.14115 0.17428 0.27506 1.16380 1.29013 1.40661 1.71560 2.16234 2.41050 2.66013 2.85854 3.09477 3.35907 3.54621 3.76803 3.86914 3.87702 3.99454 4.01979 4.11894 4.18542 4.23587 4.28599 4.38172 4.42800 4.46985 4.50406 4.71801 4.72990 4.84484 4.88476 4.95131 5.01249 5.02628 5.09341 5.15049 5.18403 5.26280 5.30139 5.37679 5.45505 5.47035 5.52246 5.98514 6.02673 6.22868 6.93260 7.36961 7.73930 8.60689 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.004426 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.411108 B = 6324.848518 C = 7498.020568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.117 4.117 4 C 0.098 3.902 5 N -0.468 5.468 6 C -0.341 4.341 7 H 0.084 0.916 8 C 0.038 3.962 9 N -0.891 5.891 10 Si 0.919 3.081 11 H -0.259 1.259 12 H -0.279 1.279 13 H -0.272 1.272 14 C 0.498 3.502 15 O -0.619 6.619 16 C -0.155 4.155 17 H 0.119 0.881 18 C -0.122 4.122 19 C -0.095 4.095 20 H 0.098 0.902 21 C -0.097 4.097 22 C -0.099 4.099 23 C -0.121 4.121 24 C -0.091 4.091 25 C -0.155 4.155 26 C 0.070 3.930 27 F -0.156 7.156 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.281 0.719 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 8.810 7.497 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.024 4.024 5 N -0.187 5.187 6 C -0.468 4.468 7 H 0.102 0.898 8 C -0.167 4.167 9 N -0.527 5.527 10 Si 0.745 3.255 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.289 3.711 15 O -0.506 6.506 16 C -0.176 4.176 17 H 0.137 0.863 18 C -0.159 4.159 19 C -0.114 4.114 20 H 0.116 0.884 21 C -0.098 4.098 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.108 4.108 25 C -0.173 4.173 26 C 0.051 3.949 27 F -0.135 7.135 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.153 0.847 39 H 0.113 0.887 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.186 0.814 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.712 8.460 7.789 11.521 hybrid contribution 0.184 -1.180 -0.040 1.194 sum -0.528 7.280 7.749 10.645 Atomic orbital electron populations 1.21713 0.94141 1.02530 1.01772 1.21478 0.97385 0.94688 1.02226 1.21763 0.94239 0.98489 1.01119 1.21758 0.95744 0.84343 1.00588 1.43796 1.56654 1.12252 1.05966 1.18897 1.38813 0.97900 0.91173 0.89819 1.25751 0.96211 1.00403 0.94351 1.69817 1.40772 1.41782 1.00370 0.86251 0.79401 0.81050 0.78827 1.18473 1.20564 1.19665 1.20071 0.79927 0.88512 0.82600 1.90508 1.55900 1.71618 1.32616 1.22032 1.04222 0.93928 0.97374 0.86307 1.23128 0.88998 1.03282 1.00469 1.20821 1.03287 0.91807 0.95511 0.88363 1.19285 0.97070 0.93840 0.99572 1.21253 0.99203 0.93650 0.97579 1.21609 0.98190 0.94797 0.99234 1.21449 0.93864 1.01145 0.94383 1.21420 1.02888 0.90174 1.02825 1.17981 0.92834 0.88751 0.95362 1.91449 1.75594 1.71205 1.75246 0.92963 0.92783 0.90766 0.91683 0.91557 0.93342 0.92629 0.91569 0.92128 0.90949 0.84740 0.88697 0.83702 0.82032 0.81415 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.12 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.12 -4.74 5.49 30.59 0.17 -4.57 16 4 C 0.10 4.47 3.92 86.38 0.34 4.80 16 5 N -0.47 -23.23 2.18 -635.56 -1.39 -24.61 16 6 C -0.34 -17.88 9.08 84.04 0.76 -17.11 16 7 H 0.08 4.65 6.78 -2.91 -0.02 4.63 16 8 C 0.04 1.97 5.26 84.93 0.45 2.42 16 9 N -0.89 -48.47 13.96 21.66 0.30 -48.17 16 10 Si 0.92 41.52 25.05 68.60 1.72 43.24 16 11 H -0.26 -11.00 6.70 99.48 0.67 -10.34 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 C 0.50 24.39 7.37 87.66 0.65 25.04 16 15 O -0.62 -32.66 15.95 -3.05 -0.05 -32.71 16 16 C -0.15 -6.37 4.93 -11.54 -0.06 -6.43 16 17 H 0.12 4.96 6.81 -2.39 -0.02 4.95 16 18 C -0.12 -4.05 9.56 30.61 0.29 -3.76 16 19 C -0.10 -3.45 5.31 -11.53 -0.06 -3.51 16 20 H 0.10 4.02 7.39 -2.39 -0.02 4.00 16 21 C -0.10 -2.96 5.62 -19.82 -0.11 -3.08 16 22 C -0.10 -2.38 9.30 22.26 0.21 -2.17 16 23 C -0.12 -2.17 10.04 22.27 0.22 -1.94 16 24 C -0.09 -1.53 10.04 22.26 0.22 -1.31 16 25 C -0.15 -3.41 10.03 22.31 0.22 -3.19 16 26 C 0.07 2.11 7.25 22.37 0.16 2.27 16 27 F -0.16 -5.48 16.61 44.97 0.75 -4.73 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.07 3.01 3.66 -2.38 -0.01 3.00 16 36 H 0.06 2.75 7.62 -2.39 -0.02 2.73 16 37 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.13 3.52 6.18 -2.39 -0.01 3.50 16 39 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 40 H 0.15 3.10 6.02 -2.91 -0.02 3.08 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.58 355.78 6.67 -58.91 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.97 Total: 27.28 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 4.36 Total: -19.21 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.08 Total: -72.78 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.05 Total: -32.71 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.75 Total: -4.73 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.72 Total: 43.24 kcal Total: -65.58 6.67 -58.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182285647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.635 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds