Wall clock time and date at job start Tue Mar 31 2020 08:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 H 1.08995 * 109.46711 * 306.06899 * 3 2 1 5 5 C 1.50697 * 109.47207 * 186.06573 * 3 2 1 6 6 H 1.08001 * 120.00454 * 244.89507 * 5 3 2 7 7 C 1.37880 * 119.99725 * 64.89424 * 5 3 2 8 8 N 1.31513 * 120.00193 * 8.50366 * 7 5 3 9 9 Si 1.86799 * 120.00125 * 188.49417 * 7 5 3 10 10 H 1.48503 * 109.46811 * 90.00587 * 9 7 5 11 11 H 1.48497 * 109.47291 * 330.00783 * 9 7 5 12 12 H 1.48496 * 109.47333 * 210.00236 * 9 7 5 13 13 N 1.46506 * 109.47051 * 66.06786 * 3 2 1 14 14 C 1.34765 * 119.99965 * 258.02123 * 13 3 2 15 15 O 1.21284 * 120.00422 * 4.82593 * 14 13 3 16 16 C 1.50705 * 120.00236 * 184.82260 * 14 13 3 17 17 C 1.52995 * 109.47307 * 182.61069 * 16 14 13 18 18 H 1.09001 * 110.27674 * 57.36925 * 17 16 14 19 19 C 1.54349 * 110.30421 * 295.29568 * 17 16 14 20 20 C 1.54340 * 102.39676 * 214.72121 * 19 17 16 21 21 C 1.51386 * 105.17194 * 26.35349 * 20 19 17 22 22 C 1.38509 * 130.35957 * 162.78640 * 21 20 19 23 23 C 1.38063 * 120.24742 * 180.02562 * 22 21 20 24 24 C 1.38478 * 119.91151 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.05704 * 180.02562 * 24 23 22 26 26 C 1.38323 * 119.87614 * 359.97438 * 24 23 22 27 27 C 1.38236 * 109.74656 * 342.81364 * 21 20 19 28 28 H 1.09009 * 109.47214 * 300.88579 * 1 2 3 29 29 H 1.09004 * 109.46811 * 60.87989 * 1 2 3 30 30 H 1.09002 * 109.47613 * 180.88098 * 1 2 3 31 31 H 1.09003 * 109.47223 * 239.99410 * 2 1 3 32 32 H 1.09004 * 109.46974 * 119.99833 * 2 1 3 33 33 H 0.97002 * 120.00023 * 4.40927 * 8 7 5 34 34 H 0.97002 * 119.99670 * 78.02015 * 13 3 2 35 35 H 1.09006 * 109.46600 * 302.60946 * 16 14 13 36 36 H 1.08998 * 109.47126 * 62.60536 * 16 14 13 37 37 H 1.09006 * 110.82028 * 332.94700 * 19 17 16 38 38 H 1.09000 * 110.82187 * 96.48688 * 19 17 16 39 39 H 1.08994 * 110.30479 * 145.27559 * 20 19 17 40 40 H 1.09002 * 110.30042 * 267.43499 * 20 19 17 41 41 H 1.07998 * 119.87757 * 0.02562 * 22 21 20 42 42 H 1.08006 * 120.04467 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.90065 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5907 1.9866 -0.8306 5 6 3.5395 1.4450 -0.1501 6 1 4.1620 1.8127 0.6522 7 6 4.1168 0.9780 -1.3119 8 7 3.3634 0.6876 -2.3500 9 14 5.9691 0.7578 -1.4115 10 1 6.3285 -0.6153 -0.9748 11 1 6.6336 1.7484 -0.5271 12 1 6.4176 0.9650 -2.8118 13 7 1.6746 2.0897 1.2625 14 6 0.6297 2.9396 1.3063 15 8 -0.0616 3.1021 0.3230 16 6 0.3200 3.6884 2.5770 17 6 -0.9430 4.5288 2.3789 18 1 -1.7774 3.8927 2.0832 19 6 -0.6987 5.6204 1.3154 20 6 -1.5468 6.7956 1.8460 21 6 -1.6249 6.5837 3.3429 22 6 -1.9718 7.4620 4.3562 23 6 -1.9723 7.0413 5.6712 24 6 -1.6244 5.7368 5.9791 25 9 -1.6245 5.3219 7.2648 26 6 -1.2779 4.8591 4.9677 27 6 -1.2778 5.2811 3.6489 28 1 -0.3634 0.5276 0.8820 29 1 -0.3633 0.5001 -0.8978 30 1 -0.3634 -1.0275 0.0158 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4096 0.8621 -2.3210 34 1 2.1848 1.9063 2.0669 35 1 0.1601 2.9775 3.3877 36 1 1.1559 4.3419 2.8265 37 1 0.3563 5.8916 1.2738 38 1 -1.0551 5.2956 0.3378 39 1 -1.0592 7.7447 1.6233 40 1 -2.5445 6.7701 1.4079 41 1 -2.2428 8.4796 4.1168 42 1 -2.2438 7.7288 6.4588 43 1 -1.0060 3.8418 5.2074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182591753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:47 Heat of formation + Delta-G solvation = -84.451913 kcal Electronic energy + Delta-G solvation = -24699.283169 eV Core-core repulsion = 21043.467175 eV Total energy + Delta-G solvation = -3655.815994 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05643 -40.50630 -38.92598 -36.03285 -35.15223 -32.59022 -32.22038 -31.14068 -30.03827 -28.53997 -26.77246 -25.05907 -23.10857 -23.00099 -21.28546 -20.98019 -20.01392 -19.50509 -17.53028 -17.28438 -16.63397 -16.18748 -15.88069 -15.67065 -15.41739 -14.79638 -14.56338 -14.20966 -13.82281 -13.78903 -13.34756 -13.25963 -13.05433 -12.60561 -12.47082 -12.36348 -12.07521 -11.89578 -11.78236 -11.58572 -11.37423 -10.99119 -10.79854 -10.76212 -10.73009 -10.61195 -10.38044 -10.18743 -9.98571 -9.20094 -9.01783 -8.91221 -8.58157 -8.38999 -7.90622 -6.45555 -4.19886 0.94863 1.00898 3.31995 3.34237 3.38910 3.40845 3.56945 3.89407 4.03854 4.28021 4.43688 4.50404 4.69013 4.86801 4.94658 4.99148 5.07146 5.25831 5.32574 5.36331 5.44196 5.55291 5.70671 5.74547 5.81321 5.87103 5.90525 5.95822 6.06128 6.07901 6.09252 6.27578 6.30914 6.37572 6.41706 6.69294 6.72282 6.85942 7.01167 7.14288 7.39452 7.54040 7.86259 8.31336 8.51342 8.74018 9.03327 9.51633 10.91063 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.003014 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.330396 B = 9288.634143 C = 9391.799148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.255 3.745 4 H 0.050 0.950 5 C -0.616 4.616 6 H 0.054 0.946 7 C 0.027 3.973 8 N -0.903 5.903 9 Si 1.070 2.930 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.284 1.284 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.030 4.030 18 H 0.097 0.903 19 C -0.106 4.106 20 C -0.084 4.084 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.156 4.156 24 C 0.094 3.906 25 F -0.142 7.142 26 C -0.140 4.140 27 C -0.059 4.059 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.274 0.726 34 H 0.389 0.611 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 10.913 14.005 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.152 3.848 4 H 0.068 0.932 5 C -0.654 4.654 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.538 5.538 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.049 4.049 18 H 0.115 0.885 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.175 4.175 24 C 0.074 3.926 25 F -0.120 7.120 26 C -0.159 4.159 27 C -0.059 4.059 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.221 0.779 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.117 10.478 12.323 18.568 hybrid contribution -0.913 0.290 1.926 2.151 sum -10.030 10.768 14.249 20.484 Atomic orbital electron populations 1.21741 0.98010 0.98972 1.01047 1.21981 0.93105 1.00285 1.01617 1.18872 0.95252 0.88599 0.82037 0.93241 1.22130 0.90688 1.48067 1.04508 0.92765 1.25746 1.06860 0.93459 0.91784 1.70736 1.08360 1.44101 1.30600 0.83532 0.74181 0.76488 0.75974 1.21323 1.21522 1.20999 1.46237 1.30434 1.44708 1.13849 1.20348 0.81159 0.80109 0.89516 1.90635 1.49455 1.65853 1.37098 1.21771 0.98885 0.99527 0.97478 1.20455 0.97701 0.96248 0.90472 0.88501 1.22357 1.00215 0.92588 0.99210 1.21151 1.01178 1.00016 0.89786 1.20771 0.99228 0.93973 0.96246 1.20460 0.99002 0.99604 0.90897 1.20992 1.04142 0.94703 0.97664 1.17492 1.03046 0.93590 0.78430 1.91495 1.94345 1.90803 1.35376 1.20578 1.03647 1.00374 0.91317 1.20512 0.96873 0.95084 0.93430 0.94179 0.93263 0.94855 0.90841 0.93811 0.91421 0.77924 0.89599 0.89082 0.91040 0.88881 0.90579 0.90006 0.85256 0.84779 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.27 37.16 0.34 -2.50 16 2 C -0.13 -2.97 5.32 -26.73 -0.14 -3.12 16 3 C 0.26 6.16 1.82 -69.08 -0.13 6.04 16 4 H 0.05 1.38 6.46 -51.93 -0.34 1.05 16 5 C -0.62 -16.28 8.73 -34.44 -0.30 -16.58 16 6 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 7 C 0.03 0.75 5.16 -17.82 -0.09 0.65 16 8 N -0.90 -26.22 12.81 55.43 0.71 -25.51 16 9 Si 1.07 24.17 29.91 -169.99 -5.08 19.09 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.71 -13.88 4.63 -54.93 -0.25 -14.14 16 14 C 0.50 9.17 6.58 -10.99 -0.07 9.10 16 15 O -0.55 -11.74 13.46 5.55 0.07 -11.66 16 16 C -0.14 -1.82 4.97 -27.88 -0.14 -1.95 16 17 C -0.03 -0.38 2.52 -90.74 -0.23 -0.61 16 18 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 19 C -0.11 -1.35 5.51 -25.32 -0.14 -1.49 16 20 C -0.08 -0.85 6.77 -26.84 -0.18 -1.03 16 21 C -0.10 -1.09 6.14 -104.19 -0.64 -1.73 16 22 C -0.08 -0.75 10.04 -39.55 -0.40 -1.15 16 23 C -0.16 -1.49 10.03 -39.56 -0.40 -1.88 16 24 C 0.09 1.03 7.30 -39.46 -0.29 0.74 16 25 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 26 C -0.14 -1.56 9.71 -39.47 -0.38 -1.95 16 27 C -0.06 -0.68 5.60 -104.21 -0.58 -1.26 16 28 H 0.04 0.78 6.86 -51.92 -0.36 0.42 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.85 6.39 -51.93 -0.33 1.52 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.27 8.04 6.31 -40.82 -0.26 7.78 16 34 H 0.39 6.71 8.77 -40.82 -0.36 6.35 16 35 H 0.09 0.98 7.81 -51.93 -0.41 0.57 16 36 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 38 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 43 H 0.13 1.33 7.80 -52.49 -0.41 0.92 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -30.13 351.40 -9.24 -39.37 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.25 Total: 7.89 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.77 Total: -18.73 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.46 Total: -39.64 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.13 -9.24 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182591753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.084 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds