Wall clock time and date at job start Tue Mar 31 2020 08:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 H 1.08995 * 109.46711 * 306.06899 * 3 2 1 5 5 C 1.50697 * 109.47207 * 186.06573 * 3 2 1 6 6 H 1.08001 * 120.00454 * 244.89507 * 5 3 2 7 7 C 1.37880 * 119.99725 * 64.89424 * 5 3 2 8 8 N 1.31513 * 120.00193 * 8.50366 * 7 5 3 9 9 Si 1.86799 * 120.00125 * 188.49417 * 7 5 3 10 10 H 1.48503 * 109.46811 * 90.00587 * 9 7 5 11 11 H 1.48497 * 109.47291 * 330.00783 * 9 7 5 12 12 H 1.48496 * 109.47333 * 210.00236 * 9 7 5 13 13 N 1.46506 * 109.47051 * 66.06786 * 3 2 1 14 14 C 1.34765 * 119.99965 * 258.02123 * 13 3 2 15 15 O 1.21284 * 120.00422 * 4.82593 * 14 13 3 16 16 C 1.50705 * 120.00236 * 184.82260 * 14 13 3 17 17 C 1.52995 * 109.47307 * 182.61069 * 16 14 13 18 18 H 1.09001 * 110.27674 * 57.36925 * 17 16 14 19 19 C 1.54349 * 110.30421 * 295.29568 * 17 16 14 20 20 C 1.54340 * 102.39676 * 214.72121 * 19 17 16 21 21 C 1.51386 * 105.17194 * 26.35349 * 20 19 17 22 22 C 1.38509 * 130.35957 * 162.78640 * 21 20 19 23 23 C 1.38063 * 120.24742 * 180.02562 * 22 21 20 24 24 C 1.38478 * 119.91151 * 0.02562 * 23 22 21 25 25 F 1.35103 * 120.05704 * 180.02562 * 24 23 22 26 26 C 1.38323 * 119.87614 * 359.97438 * 24 23 22 27 27 C 1.38236 * 109.74656 * 342.81364 * 21 20 19 28 28 H 1.09009 * 109.47214 * 300.88579 * 1 2 3 29 29 H 1.09004 * 109.46811 * 60.87989 * 1 2 3 30 30 H 1.09002 * 109.47613 * 180.88098 * 1 2 3 31 31 H 1.09003 * 109.47223 * 239.99410 * 2 1 3 32 32 H 1.09004 * 109.46974 * 119.99833 * 2 1 3 33 33 H 0.97002 * 120.00023 * 4.40927 * 8 7 5 34 34 H 0.97002 * 119.99670 * 78.02015 * 13 3 2 35 35 H 1.09006 * 109.46600 * 302.60946 * 16 14 13 36 36 H 1.08998 * 109.47126 * 62.60536 * 16 14 13 37 37 H 1.09006 * 110.82028 * 332.94700 * 19 17 16 38 38 H 1.09000 * 110.82187 * 96.48688 * 19 17 16 39 39 H 1.08994 * 110.30479 * 145.27559 * 20 19 17 40 40 H 1.09002 * 110.30042 * 267.43499 * 20 19 17 41 41 H 1.07998 * 119.87757 * 0.02562 * 22 21 20 42 42 H 1.08006 * 120.04467 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.90065 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5907 1.9866 -0.8306 5 6 3.5395 1.4450 -0.1501 6 1 4.1620 1.8127 0.6522 7 6 4.1168 0.9780 -1.3119 8 7 3.3634 0.6876 -2.3500 9 14 5.9691 0.7578 -1.4115 10 1 6.3285 -0.6153 -0.9748 11 1 6.6336 1.7484 -0.5271 12 1 6.4176 0.9650 -2.8118 13 7 1.6746 2.0897 1.2625 14 6 0.6297 2.9396 1.3063 15 8 -0.0616 3.1021 0.3230 16 6 0.3200 3.6884 2.5770 17 6 -0.9430 4.5288 2.3789 18 1 -1.7774 3.8927 2.0832 19 6 -0.6987 5.6204 1.3154 20 6 -1.5468 6.7956 1.8460 21 6 -1.6249 6.5837 3.3429 22 6 -1.9718 7.4620 4.3562 23 6 -1.9723 7.0413 5.6712 24 6 -1.6244 5.7368 5.9791 25 9 -1.6245 5.3219 7.2648 26 6 -1.2779 4.8591 4.9677 27 6 -1.2778 5.2811 3.6489 28 1 -0.3634 0.5276 0.8820 29 1 -0.3633 0.5001 -0.8978 30 1 -0.3634 -1.0275 0.0158 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4096 0.8621 -2.3210 34 1 2.1848 1.9063 2.0669 35 1 0.1601 2.9775 3.3877 36 1 1.1559 4.3419 2.8265 37 1 0.3563 5.8916 1.2738 38 1 -1.0551 5.2956 0.3378 39 1 -1.0592 7.7447 1.6233 40 1 -2.5445 6.7701 1.4079 41 1 -2.2428 8.4796 4.1168 42 1 -2.2438 7.7288 6.4588 43 1 -1.0060 3.8418 5.2074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182591753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:46 Heat of formation + Delta-G solvation = -100.220042 kcal Electronic energy + Delta-G solvation = -24699.966927 eV Core-core repulsion = 21043.467175 eV Total energy + Delta-G solvation = -3656.499752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.88947 -41.48764 -40.35047 -37.48948 -36.43948 -34.37862 -33.36335 -32.74657 -31.05319 -29.43674 -28.51465 -26.29180 -24.96085 -23.86406 -22.39329 -22.08612 -21.58904 -20.89379 -19.28846 -18.39010 -17.58947 -17.44218 -17.01608 -16.56365 -16.47978 -16.23997 -15.87311 -15.63340 -15.13268 -14.86212 -14.81969 -14.52291 -14.31699 -14.01677 -13.96103 -13.56787 -13.38863 -13.34445 -12.90364 -12.73220 -12.58180 -12.46711 -12.40839 -12.20102 -11.94268 -11.85272 -11.80431 -11.73556 -11.66906 -10.88343 -10.61527 -10.47214 -9.92189 -9.66151 -9.40145 -8.62619 -6.37709 0.14620 0.23812 1.55637 1.63355 1.80255 1.85055 2.45949 2.57013 2.65793 3.10327 3.16497 3.49044 3.53287 3.84613 3.95204 4.03174 4.05855 4.18464 4.27515 4.28917 4.35846 4.46912 4.50351 4.53996 4.57640 4.78081 4.83531 4.87945 4.94344 5.00178 5.06405 5.07090 5.15273 5.19721 5.22999 5.25858 5.31984 5.38818 5.52591 5.60991 5.71977 5.86833 5.92005 6.25369 6.50499 6.93893 7.37841 7.57105 8.72871 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.003014 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.330396 B = 9288.634143 C = 9391.799148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.261 3.739 4 H 0.004 0.996 5 C -0.622 4.622 6 H 0.059 0.941 7 C -0.023 4.023 8 N -0.929 5.929 9 Si 1.118 2.882 10 H -0.271 1.271 11 H -0.270 1.270 12 H -0.289 1.289 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.585 6.585 16 C -0.123 4.123 17 C -0.027 4.027 18 H 0.083 0.917 19 C -0.109 4.109 20 C -0.077 4.077 21 C -0.107 4.107 22 C -0.078 4.078 23 C -0.150 4.150 24 C 0.078 3.922 25 F -0.148 7.148 26 C -0.146 4.146 27 C -0.071 4.071 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.259 0.741 34 H 0.403 0.597 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 12.072 16.438 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.157 3.843 4 H 0.022 0.978 5 C -0.661 4.661 6 H 0.077 0.923 7 C -0.223 4.223 8 N -0.565 5.565 9 Si 0.940 3.060 10 H -0.197 1.197 11 H -0.195 1.195 12 H -0.215 1.215 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.466 6.466 16 C -0.163 4.163 17 C -0.045 4.045 18 H 0.101 0.899 19 C -0.147 4.147 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.095 4.095 23 C -0.169 4.169 24 C 0.059 3.941 25 F -0.126 7.126 26 C -0.165 4.165 27 C -0.071 4.071 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.237 0.763 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.024 11.646 14.806 20.887 hybrid contribution -1.006 -0.016 1.186 1.555 sum -10.030 11.630 15.992 22.172 Atomic orbital electron populations 1.21596 0.96114 1.00418 1.00334 1.21816 0.94728 0.98969 1.00674 1.18479 0.93953 0.89161 0.82711 0.97821 1.22492 0.92013 1.47154 1.04401 0.92305 1.27181 1.10622 0.92910 0.91577 1.70858 1.07669 1.46233 1.31787 0.82921 0.69445 0.77651 0.76016 1.19688 1.19493 1.21539 1.46063 1.31352 1.45139 1.12840 1.21196 0.79927 0.79344 0.90774 1.90629 1.50432 1.66586 1.38938 1.21737 0.99744 0.99718 0.95082 1.20347 0.96802 0.96017 0.91376 0.89859 1.22276 1.00057 0.94081 0.98280 1.21088 1.01225 0.99409 0.89610 1.20917 0.99272 0.93932 0.96636 1.20758 0.97886 1.00641 0.90243 1.21313 1.02715 0.94374 0.98490 1.17695 1.03895 0.94383 0.78167 1.91480 1.94483 1.90965 1.35713 1.20668 1.03696 1.00933 0.91181 1.20340 0.98431 0.95419 0.92937 0.93416 0.95320 0.92291 0.93753 0.92550 0.93102 0.76266 0.86979 0.87686 0.91984 0.91338 0.88959 0.89121 0.82367 0.82441 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.27 71.98 0.67 -4.52 16 2 C -0.12 -5.67 5.32 30.59 0.16 -5.50 16 3 C 0.26 12.95 1.82 44.24 0.08 13.03 16 4 H 0.00 0.23 6.46 -2.39 -0.02 0.21 16 5 C -0.62 -33.24 8.73 25.60 0.22 -33.01 16 6 H 0.06 3.02 7.83 -2.91 -0.02 3.00 16 7 C -0.02 -1.29 5.16 84.66 0.44 -0.85 16 8 N -0.93 -55.69 12.81 21.45 0.27 -55.41 16 9 Si 1.12 48.42 29.91 68.60 2.05 50.47 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.71 -27.74 4.63 -446.10 -2.06 -29.80 16 14 C 0.50 18.30 6.58 87.66 0.58 18.88 16 15 O -0.58 -25.82 13.46 -3.04 -0.04 -25.86 16 16 C -0.12 -3.14 4.97 29.85 0.15 -2.99 16 17 C -0.03 -0.67 2.52 -10.87 -0.03 -0.69 16 18 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 19 C -0.11 -2.78 5.51 31.51 0.17 -2.61 16 20 C -0.08 -1.43 6.77 30.52 0.21 -1.22 16 21 C -0.11 -2.05 6.14 -19.58 -0.12 -2.17 16 22 C -0.08 -1.17 10.04 22.29 0.22 -0.95 16 23 C -0.15 -2.39 10.03 22.29 0.22 -2.17 16 24 C 0.08 1.54 7.30 22.35 0.16 1.71 16 25 F -0.15 -3.16 17.27 44.97 0.78 -2.38 16 26 C -0.15 -2.98 9.71 22.34 0.22 -2.77 16 27 C -0.07 -1.53 5.60 -19.60 -0.11 -1.64 16 28 H 0.05 1.84 6.86 -2.38 -0.02 1.83 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 2.30 6.39 -2.39 -0.02 2.28 16 32 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.26 15.99 6.31 -92.71 -0.58 15.41 16 34 H 0.40 13.46 8.77 -92.71 -0.81 12.64 16 35 H 0.11 2.29 7.81 -2.38 -0.02 2.27 16 36 H 0.10 2.44 8.09 -2.39 -0.02 2.42 16 37 H 0.06 1.66 7.88 -2.38 -0.02 1.64 16 38 H 0.07 2.06 7.42 -2.39 -0.02 2.04 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.14 2.53 7.80 -2.91 -0.02 2.51 16 Total: -1.00 -67.23 351.40 4.64 -62.59 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.39 Total: 27.88 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.25 Total: -27.48 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.79 Total: -85.21 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.05 Total: 50.47 kcal Total: -67.23 4.64 -62.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182591753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.629 kcal (2) G-P(sol) polarization free energy of solvation -67.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds