Wall clock time and date at job start Tue Mar 31 2020 09:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46907 * 2 1 4 4 C 1.52999 * 109.47320 * 119.99672 * 2 1 3 5 5 C 1.52995 * 109.47630 * 180.02562 * 4 2 1 6 6 C 1.53009 * 109.47192 * 300.00251 * 5 4 2 7 7 C 1.52999 * 109.47039 * 59.99387 * 6 5 4 8 8 H 1.08998 * 109.47163 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46978 * 60.00132 * 7 6 5 10 10 O 1.21286 * 120.00309 * 239.99675 * 9 7 6 11 11 N 1.34781 * 119.99594 * 60.00133 * 9 7 6 12 12 C 1.40012 * 119.99885 * 175.11205 * 11 9 7 13 13 C 1.39369 * 119.90988 * 146.31822 * 12 11 9 14 14 C 1.38370 * 120.46617 * 179.97438 * 13 12 11 15 15 C 1.38005 * 120.28902 * 0.02562 * 14 13 12 16 16 F 1.35107 * 120.09390 * 179.97438 * 15 14 13 17 17 C 1.41006 * 119.81201 * 359.97155 * 15 14 13 18 18 C 1.41298 * 120.22701 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00116 * 331.61021 * 18 17 15 20 20 C 1.39918 * 119.99951 * 151.60604 * 18 17 15 21 21 N 1.30855 * 120.00523 * 348.99318 * 20 18 17 22 22 Si 1.86807 * 120.00177 * 168.98720 * 20 18 17 23 23 H 1.48502 * 109.46967 * 59.99949 * 22 20 18 24 24 H 1.48492 * 109.47300 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46773 * 300.00581 * 22 20 18 26 26 C 1.38144 * 119.90875 * 326.04675 * 12 11 9 27 27 C 1.52996 * 109.47320 * 300.00563 * 7 6 5 28 28 H 1.08996 * 109.47344 * 299.99826 * 1 2 3 29 29 H 1.09001 * 109.47159 * 60.00810 * 1 2 3 30 30 H 1.09008 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47276 * 59.99956 * 4 2 1 32 32 H 1.08996 * 109.47321 * 300.00516 * 4 2 1 33 33 H 1.08994 * 109.47678 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47005 * 59.99572 * 5 4 2 35 35 H 1.08996 * 109.46402 * 300.00080 * 6 5 4 36 36 H 1.08995 * 109.47271 * 179.97438 * 6 5 4 37 37 H 0.96996 * 120.00326 * 354.83773 * 11 9 7 38 38 H 1.07991 * 119.76908 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.85153 * 179.97438 * 14 13 12 40 40 H 0.96989 * 120.00478 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.14714 * 0.02562 * 26 12 11 42 42 H 1.09008 * 109.47505 * 180.02562 * 27 7 6 43 43 H 1.09008 * 109.47024 * 299.99663 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 6 4.0723 0.7006 -1.2486 10 8 3.2838 1.6222 -1.2487 11 7 5.3973 0.9473 -1.2483 12 6 5.8644 2.2632 -1.3514 13 6 7.0332 2.6394 -0.6920 14 6 7.5055 3.9366 -0.7864 15 6 6.8225 4.8732 -1.5353 16 9 7.2870 6.1388 -1.6244 17 6 5.6387 4.5055 -2.2074 18 6 4.9328 5.4573 -2.9771 19 1 4.9847 6.5051 -2.7204 20 6 4.1667 5.0423 -4.0719 21 7 4.2704 3.8158 -4.5159 22 14 2.9955 6.2392 -4.8997 23 1 3.7603 7.4022 -5.4172 24 1 2.3063 5.5589 -6.0254 25 1 1.9885 6.7080 -3.9140 26 6 5.1685 3.1836 -2.1109 27 6 2.0406 -0.7209 -1.2492 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7488 1.2494 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2340 2.1398 34 1 3.9329 0.3071 1.2498 35 1 3.7175 -2.4693 0.0002 36 1 5.1705 -1.4408 0.0004 37 1 6.0273 0.2136 -1.1727 38 1 7.5741 1.9134 -0.1033 39 1 8.4120 4.2174 -0.2710 40 1 3.7391 3.5280 -5.2746 41 1 4.2650 2.8905 -2.6248 42 1 1.6771 -0.2075 -2.1395 43 1 1.6776 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184511891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:24 Heat of formation + Delta-G solvation = -91.046428 kcal Electronic energy + Delta-G solvation = -25718.140870 eV Core-core repulsion = 22062.038916 eV Total energy + Delta-G solvation = -3656.101954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.17092 -40.41350 -38.03125 -36.52336 -34.35544 -33.37007 -32.42594 -30.90584 -29.75556 -27.91686 -26.27445 -25.40571 -23.58824 -21.92613 -21.50552 -20.84156 -20.04740 -18.99156 -17.66179 -16.20545 -16.03267 -15.93382 -15.53313 -15.04563 -14.69011 -14.34972 -14.29253 -13.99745 -13.90751 -13.36481 -13.17532 -12.96652 -12.55180 -12.31922 -12.08787 -11.93453 -11.83405 -11.75202 -11.68118 -11.56968 -11.35453 -11.13614 -10.97107 -10.89092 -10.49331 -10.43365 -10.17348 -10.04927 -9.94784 -9.70168 -9.39962 -9.09961 -8.69807 -7.51761 -6.87803 -6.70641 -4.41805 2.49827 2.78897 3.08374 3.11638 3.14305 3.35361 3.72450 3.94670 4.57296 4.69362 4.76084 4.79212 5.12358 5.20565 5.29130 5.43781 5.48004 5.51954 5.57723 5.62089 5.73622 5.87764 5.90666 5.92962 5.95815 6.04514 6.06373 6.09641 6.26507 6.29081 6.38777 6.39323 6.49395 6.71976 6.84134 6.92801 6.99556 7.18192 7.44675 7.56155 7.69747 8.01819 8.12475 8.28201 8.49464 8.77741 8.82941 8.89285 10.17499 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.005160 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.798318 B = 5425.030537 C = 6804.685253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.109 4.109 8 H 0.094 0.906 9 C 0.512 3.488 10 O -0.507 6.507 11 N -0.668 5.668 12 C 0.136 3.864 13 C -0.240 4.240 14 C -0.110 4.110 15 C -0.039 4.039 16 F -0.164 7.164 17 C 0.094 3.906 18 C -0.448 4.448 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.791 5.791 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.132 4.132 27 C -0.090 4.090 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.396 0.604 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.282 0.718 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 -12.652 5.908 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.122 0.878 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.146 4.146 7 C -0.130 4.130 8 H 0.112 0.888 9 C 0.299 3.701 10 O -0.382 6.382 11 N -0.311 5.311 12 C 0.043 3.957 13 C -0.261 4.261 14 C -0.130 4.130 15 C -0.059 4.059 16 F -0.143 7.143 17 C 0.090 3.910 18 C -0.478 4.478 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.416 5.416 22 Si 0.740 3.260 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.153 4.153 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.167 0.833 42 H 0.088 0.912 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.978 -12.131 5.683 13.974 hybrid contribution 0.082 0.207 -0.425 0.479 sum -3.896 -11.924 5.259 13.602 Atomic orbital electron populations 1.21770 0.95804 1.00775 1.01567 1.21438 0.95062 1.02629 0.93628 0.87809 1.21570 0.95081 1.00067 0.98086 1.21578 0.96249 1.01202 0.97173 1.21518 1.00232 0.99226 0.93615 1.21383 0.98078 0.93632 0.99931 0.88794 1.20495 0.82211 0.91143 0.76266 1.90682 1.54550 1.45981 1.46980 1.43448 1.07017 1.07701 1.72981 1.17622 0.95765 0.83810 0.98492 1.19855 1.00901 0.95971 1.09405 1.20236 0.99375 0.93083 1.00312 1.17917 0.97647 0.79656 1.10700 1.91265 1.88587 1.38593 1.95890 1.17517 0.89154 0.93400 0.90900 1.19460 1.23724 0.95202 1.09367 0.89980 1.25887 0.95922 0.95866 0.96638 1.69756 1.33504 1.17429 1.20888 0.86240 0.80336 0.80641 0.78812 1.18887 1.20223 1.18682 1.21321 1.01928 0.92451 0.99632 1.21340 0.92216 1.00028 0.99158 0.93103 0.92714 0.93507 0.92554 0.92361 0.92023 0.91576 0.91064 0.91709 0.76969 0.88373 0.87857 0.90730 0.83339 0.91247 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.11 -1.48 2.42 -90.62 -0.22 -1.70 16 3 H 0.10 1.81 5.51 -51.93 -0.29 1.53 16 4 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 5 C -0.12 -1.44 5.70 -26.73 -0.15 -1.60 16 6 C -0.11 -1.12 5.35 -26.73 -0.14 -1.27 16 7 C -0.11 -1.40 3.02 -91.77 -0.28 -1.68 16 8 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 9 C 0.51 9.14 5.37 -10.98 -0.06 9.08 16 10 O -0.51 -11.24 11.36 5.55 0.06 -11.18 16 11 N -0.67 -11.95 5.27 -9.89 -0.05 -12.00 16 12 C 0.14 3.06 6.27 -83.73 -0.52 2.54 16 13 C -0.24 -5.11 9.96 -39.11 -0.39 -5.50 16 14 C -0.11 -2.51 10.00 -39.62 -0.40 -2.91 16 15 C -0.04 -1.01 7.31 -38.62 -0.28 -1.29 16 16 F -0.16 -4.25 16.75 2.25 0.04 -4.21 16 17 C 0.09 2.61 5.56 -106.78 -0.59 2.02 16 18 C -0.45 -12.48 8.76 -37.79 -0.33 -12.81 16 19 H 0.08 2.24 7.76 -52.48 -0.41 1.83 16 20 C 0.07 1.95 5.25 -17.34 -0.09 1.86 16 21 N -0.79 -20.88 10.81 55.55 0.60 -20.28 16 22 Si 0.92 19.56 29.57 -169.99 -5.03 14.53 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.13 -3.48 7.26 -38.71 -0.28 -3.76 16 27 C -0.09 -1.16 4.37 -26.73 -0.12 -1.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.95 7.22 -51.93 -0.37 0.58 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 37 H 0.40 5.55 8.09 -40.82 -0.33 5.22 16 38 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.15 4.17 4.55 -52.49 -0.24 3.93 16 42 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 43 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -30.10 342.46 -9.10 -39.20 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.23 Total: 9.83 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.66 Total: -21.06 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.55 Total: -32.28 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.06 Total: -11.18 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.10 -9.10 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184511891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.843 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds