Wall clock time and date at job start Tue Mar 31 2020 09:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46907 * 2 1 4 4 C 1.52999 * 109.47320 * 119.99672 * 2 1 3 5 5 C 1.52995 * 109.47630 * 180.02562 * 4 2 1 6 6 C 1.53009 * 109.47192 * 300.00251 * 5 4 2 7 7 C 1.52999 * 109.47039 * 59.99387 * 6 5 4 8 8 H 1.08998 * 109.47163 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46978 * 60.00132 * 7 6 5 10 10 O 1.21286 * 120.00309 * 239.99675 * 9 7 6 11 11 N 1.34781 * 119.99594 * 60.00133 * 9 7 6 12 12 C 1.40012 * 119.99885 * 175.11205 * 11 9 7 13 13 C 1.39369 * 119.90988 * 146.31822 * 12 11 9 14 14 C 1.38370 * 120.46617 * 179.97438 * 13 12 11 15 15 C 1.38005 * 120.28902 * 0.02562 * 14 13 12 16 16 F 1.35107 * 120.09390 * 179.97438 * 15 14 13 17 17 C 1.41006 * 119.81201 * 359.97155 * 15 14 13 18 18 C 1.41298 * 120.22701 * 180.02562 * 17 15 14 19 19 H 1.08004 * 120.00116 * 331.61021 * 18 17 15 20 20 C 1.39918 * 119.99951 * 151.60604 * 18 17 15 21 21 N 1.30855 * 120.00523 * 348.99318 * 20 18 17 22 22 Si 1.86807 * 120.00177 * 168.98720 * 20 18 17 23 23 H 1.48502 * 109.46967 * 59.99949 * 22 20 18 24 24 H 1.48492 * 109.47300 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46773 * 300.00581 * 22 20 18 26 26 C 1.38144 * 119.90875 * 326.04675 * 12 11 9 27 27 C 1.52996 * 109.47320 * 300.00563 * 7 6 5 28 28 H 1.08996 * 109.47344 * 299.99826 * 1 2 3 29 29 H 1.09001 * 109.47159 * 60.00810 * 1 2 3 30 30 H 1.09008 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47276 * 59.99956 * 4 2 1 32 32 H 1.08996 * 109.47321 * 300.00516 * 4 2 1 33 33 H 1.08994 * 109.47678 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47005 * 59.99572 * 5 4 2 35 35 H 1.08996 * 109.46402 * 300.00080 * 6 5 4 36 36 H 1.08995 * 109.47271 * 179.97438 * 6 5 4 37 37 H 0.96996 * 120.00326 * 354.83773 * 11 9 7 38 38 H 1.07991 * 119.76908 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.85153 * 179.97438 * 14 13 12 40 40 H 0.96989 * 120.00478 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.14714 * 0.02562 * 26 12 11 42 42 H 1.09008 * 109.47505 * 180.02562 * 27 7 6 43 43 H 1.09008 * 109.47024 * 299.99663 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 1 3.9339 -1.2343 -2.1388 9 6 4.0723 0.7006 -1.2486 10 8 3.2838 1.6222 -1.2487 11 7 5.3973 0.9473 -1.2483 12 6 5.8644 2.2632 -1.3514 13 6 7.0332 2.6394 -0.6920 14 6 7.5055 3.9366 -0.7864 15 6 6.8225 4.8732 -1.5353 16 9 7.2870 6.1388 -1.6244 17 6 5.6387 4.5055 -2.2074 18 6 4.9328 5.4573 -2.9771 19 1 4.9847 6.5051 -2.7204 20 6 4.1667 5.0423 -4.0719 21 7 4.2704 3.8158 -4.5159 22 14 2.9955 6.2392 -4.8997 23 1 3.7603 7.4022 -5.4172 24 1 2.3063 5.5589 -6.0254 25 1 1.9885 6.7080 -3.9140 26 6 5.1685 3.1836 -2.1109 27 6 2.0406 -0.7209 -1.2492 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7488 1.2494 32 1 1.6766 -0.2074 2.1392 33 1 3.9333 -1.2340 2.1398 34 1 3.9329 0.3071 1.2498 35 1 3.7175 -2.4693 0.0002 36 1 5.1705 -1.4408 0.0004 37 1 6.0273 0.2136 -1.1727 38 1 7.5741 1.9134 -0.1033 39 1 8.4120 4.2174 -0.2710 40 1 3.7391 3.5280 -5.2746 41 1 4.2650 2.8905 -2.6248 42 1 1.6771 -0.2075 -2.1395 43 1 1.6776 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184511891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:24 Heat of formation + Delta-G solvation = -107.724832 kcal Electronic energy + Delta-G solvation = -25718.864100 eV Core-core repulsion = 22062.038916 eV Total energy + Delta-G solvation = -3656.825184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.18351 -41.74623 -39.53521 -38.02821 -36.11447 -35.06913 -33.54022 -31.91355 -31.68601 -29.65753 -27.38488 -27.18986 -24.89191 -23.47330 -22.82921 -22.28670 -21.39297 -20.38835 -19.47122 -17.96837 -17.70303 -17.57709 -16.82373 -16.66175 -16.20193 -15.95078 -15.75249 -15.35271 -15.28473 -14.71997 -14.63984 -14.34238 -14.15977 -13.74985 -13.62220 -13.50902 -13.22583 -13.05544 -12.94785 -12.82864 -12.75691 -12.65022 -12.34480 -12.29233 -12.14027 -11.80155 -11.63988 -11.39785 -11.27347 -10.99413 -10.90733 -10.76730 -10.24341 -9.46035 -8.75472 -8.57816 -6.47303 0.66343 0.90992 1.30161 1.42308 1.43194 1.85902 2.15126 2.32584 2.66552 3.51267 3.67560 3.79873 3.82603 4.04120 4.09165 4.27565 4.29277 4.31894 4.50671 4.52979 4.63852 4.65632 4.73105 4.83650 4.94167 4.95864 4.98622 5.05788 5.07855 5.08634 5.13866 5.18595 5.24416 5.34646 5.37072 5.42230 5.53163 5.62622 5.71427 5.79951 5.81245 6.06360 6.21251 6.52682 6.71390 6.79282 6.87747 7.46596 8.25825 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.005160 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.798318 B = 5425.030537 C = 6804.685253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.054 0.946 4 C -0.106 4.106 5 C -0.126 4.126 6 C -0.102 4.102 7 C -0.100 4.100 8 H 0.118 0.882 9 C 0.505 3.495 10 O -0.556 6.556 11 N -0.658 5.658 12 C 0.141 3.859 13 C -0.221 4.221 14 C -0.106 4.106 15 C -0.072 4.072 16 F -0.171 7.171 17 C 0.060 3.940 18 C -0.495 4.495 19 H 0.069 0.931 20 C 0.034 3.966 21 N -0.819 5.819 22 Si 0.983 3.017 23 H -0.256 1.256 24 H -0.260 1.260 25 H -0.265 1.265 26 C -0.159 4.159 27 C -0.089 4.089 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.419 0.581 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.288 0.712 41 H 0.125 0.875 42 H 0.040 0.960 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -16.157 6.960 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.072 0.928 4 C -0.143 4.143 5 C -0.163 4.163 6 C -0.139 4.139 7 C -0.122 4.122 8 H 0.136 0.864 9 C 0.294 3.706 10 O -0.433 6.433 11 N -0.304 5.304 12 C 0.047 3.953 13 C -0.242 4.242 14 C -0.126 4.126 15 C -0.092 4.092 16 F -0.150 7.150 17 C 0.057 3.943 18 C -0.524 4.524 19 H 0.087 0.913 20 C -0.181 4.181 21 N -0.444 5.444 22 Si 0.803 3.197 23 H -0.181 1.181 24 H -0.184 1.184 25 H -0.189 1.189 26 C -0.181 4.181 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.257 0.743 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.098 0.902 41 H 0.143 0.857 42 H 0.059 0.941 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.432 -15.683 6.748 17.415 hybrid contribution -0.021 1.204 -0.619 1.354 sum -3.453 -14.479 6.130 16.098 Atomic orbital electron populations 1.21744 0.94896 1.02168 1.00818 1.21363 0.95964 1.00358 0.95429 0.92757 1.21546 0.95215 1.01131 0.96457 1.21595 0.96174 0.99459 0.99083 1.21576 1.01307 1.00124 0.90911 1.21479 0.97912 0.90120 1.02648 0.86430 1.21581 0.81540 0.93025 0.74444 1.90692 1.55736 1.48206 1.48704 1.43410 1.07862 1.06504 1.72669 1.17778 0.95514 0.85320 0.96726 1.20380 0.99851 0.96271 1.07731 1.20661 0.99953 0.92863 0.99096 1.18279 0.98274 0.80277 1.12410 1.91228 1.88573 1.39142 1.96101 1.17893 0.90235 0.94352 0.91861 1.19624 1.26577 0.94844 1.11373 0.91272 1.26705 0.96958 0.97737 0.96658 1.69813 1.34333 1.18852 1.21421 0.85248 0.77967 0.78535 0.77979 1.18056 1.18398 1.18910 1.21196 1.02198 0.93150 1.01551 1.21367 0.92377 1.01464 0.97477 0.93101 0.94332 0.90890 0.89705 0.92874 0.89701 0.95390 0.87608 0.90015 0.74327 0.83544 0.84376 0.90182 0.85691 0.94099 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.19 71.98 0.66 -2.60 16 2 C -0.11 -3.02 2.42 -10.79 -0.03 -3.04 16 3 H 0.05 2.02 5.51 -2.39 -0.01 2.01 16 4 C -0.11 -2.19 5.20 30.59 0.16 -2.03 16 5 C -0.13 -2.56 5.70 30.60 0.17 -2.38 16 6 C -0.10 -1.66 5.35 30.60 0.16 -1.50 16 7 C -0.10 -2.35 3.02 -11.54 -0.03 -2.38 16 8 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 9 C 0.50 17.99 5.37 87.66 0.47 18.46 16 10 O -0.56 -26.04 11.36 -3.05 -0.03 -26.07 16 11 N -0.66 -22.74 5.27 -303.60 -1.60 -24.34 16 12 C 0.14 6.32 6.27 38.08 0.24 6.56 16 13 C -0.22 -8.92 9.96 22.57 0.22 -8.69 16 14 C -0.11 -4.71 10.00 22.25 0.22 -4.48 16 15 C -0.07 -3.86 7.31 22.89 0.17 -3.69 16 16 F -0.17 -9.18 16.75 44.97 0.75 -8.43 16 17 C 0.06 3.52 5.56 -21.26 -0.12 3.40 16 18 C -0.49 -29.40 8.76 23.43 0.21 -29.20 16 19 H 0.07 4.08 7.76 -2.91 -0.02 4.06 16 20 C 0.03 1.88 5.25 85.25 0.45 2.32 16 21 N -0.82 -45.45 10.81 21.82 0.24 -45.21 16 22 Si 0.98 41.88 29.57 68.60 2.03 43.91 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.16 -8.79 7.26 22.83 0.17 -8.62 16 27 C -0.09 -2.16 4.37 30.59 0.13 -2.03 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 0.78 7.22 -2.39 -0.02 0.76 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.10 7.45 -2.39 -0.02 1.08 16 37 H 0.42 10.40 8.09 -92.71 -0.75 9.65 16 38 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 40 H 0.29 14.52 8.30 -92.72 -0.77 13.75 16 41 H 0.13 7.47 4.55 -2.91 -0.01 7.46 16 42 H 0.04 1.21 8.10 -2.38 -0.02 1.19 16 43 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -73.16 342.46 4.92 -68.24 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.28 Total: 31.81 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 3.26 Total: -39.91 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.36 Total: -69.55 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.03 Total: -26.07 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.75 Total: -8.43 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -73.16 4.92 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184511891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.481 kcal (2) G-P(sol) polarization free energy of solvation -73.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds