Wall clock time and date at job start Tue Mar 31 2020 09:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46819 * 2 1 4 4 C 1.53002 * 109.47013 * 240.00243 * 2 1 3 5 5 C 1.52994 * 109.47020 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47322 * 60.00018 * 5 4 2 7 7 C 1.53002 * 109.47058 * 299.99959 * 6 5 4 8 8 H 1.08996 * 109.47475 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47251 * 300.00259 * 7 6 5 10 10 O 1.21285 * 120.00336 * 119.99546 * 9 7 6 11 11 N 1.34786 * 119.99805 * 299.99814 * 9 7 6 12 12 C 1.40000 * 119.99719 * 175.09375 * 11 9 7 13 13 C 1.39365 * 119.91541 * 326.48994 * 12 11 9 14 14 C 1.38368 * 120.47314 * 179.76611 * 13 12 11 15 15 C 1.38010 * 120.28389 * 0.51362 * 14 13 12 16 16 F 1.35096 * 120.09360 * 179.72575 * 15 14 13 17 17 C 1.41003 * 119.81267 * 359.74321 * 15 14 13 18 18 C 1.41297 * 120.22734 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00177 * 331.28899 * 18 17 15 20 20 C 1.39926 * 120.00100 * 151.29792 * 18 17 15 21 21 N 1.30849 * 120.00144 * 166.78285 * 20 18 17 22 22 Si 1.86802 * 119.99767 * 346.77982 * 20 18 17 23 23 H 1.48494 * 109.47399 * 95.30186 * 22 20 18 24 24 H 1.48501 * 109.46708 * 215.30488 * 22 20 18 25 25 H 1.48502 * 109.46973 * 335.30110 * 22 20 18 26 26 C 1.38148 * 119.90647 * 146.76883 * 12 11 9 27 27 C 1.52997 * 109.46912 * 120.00101 * 2 1 3 28 28 H 1.08993 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46942 * 299.99714 * 1 2 3 30 30 H 1.09006 * 109.46655 * 59.99944 * 1 2 3 31 31 H 1.08998 * 109.46998 * 60.00124 * 4 2 1 32 32 H 1.09004 * 109.46743 * 300.00087 * 4 2 1 33 33 H 1.09001 * 109.47628 * 180.02562 * 5 4 2 34 34 H 1.09006 * 109.46836 * 299.99804 * 5 4 2 35 35 H 1.08995 * 109.47442 * 59.99620 * 6 5 4 36 36 H 1.08996 * 109.47354 * 180.02562 * 6 5 4 37 37 H 0.96999 * 119.99450 * 355.08914 * 11 9 7 38 38 H 1.08002 * 119.76213 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.85625 * 180.26362 * 14 13 12 40 40 H 0.97001 * 119.99798 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.14501 * 359.94946 * 26 12 11 42 42 H 1.09003 * 109.46800 * 60.00318 * 27 2 1 43 43 H 1.08996 * 109.47469 * 299.99862 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2495 8 1 3.9321 -1.2365 2.1395 9 6 4.0723 0.6984 1.2499 10 8 3.2845 1.6206 1.2498 11 7 5.3976 0.9443 1.2502 12 6 5.8654 2.2597 1.1468 13 6 5.1591 3.1910 0.3878 14 6 5.6085 4.4954 0.2817 15 6 6.7687 4.8858 0.9189 16 9 7.2068 6.1590 0.8082 17 6 7.4957 3.9521 1.6856 18 6 8.6844 4.3425 2.3422 19 1 9.2894 5.1392 1.9352 20 6 9.0778 3.6968 3.5196 21 7 10.2880 3.8681 3.9867 22 14 7.8752 2.5904 4.4246 23 1 8.0889 1.1813 4.0077 24 1 8.0954 2.7126 5.8881 25 1 6.4851 2.9980 4.0974 26 6 7.0292 2.6296 1.7928 27 6 2.0400 -0.7213 1.2492 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -0.2073 -2.1392 32 1 1.6767 -1.7489 -1.2493 33 1 3.9334 -1.2352 -2.1392 34 1 3.9337 0.3058 -1.2487 35 1 3.7158 -2.4709 0.0000 36 1 5.1695 -1.4434 0.0007 37 1 6.0270 0.2098 1.3221 38 1 4.2523 2.8935 -0.1177 39 1 5.0510 5.2100 -0.3056 40 1 10.5605 3.4208 4.8031 41 1 7.5781 1.9066 2.3777 42 1 1.6767 -1.7490 1.2491 43 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184511903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:27 Heat of formation + Delta-G solvation = -88.942942 kcal Electronic energy + Delta-G solvation = -25572.892801 eV Core-core repulsion = 21916.882061 eV Total energy + Delta-G solvation = -3656.010740 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.36910 -40.69241 -38.31108 -36.85483 -34.46659 -33.56724 -32.62730 -31.10473 -30.60749 -28.30635 -26.42503 -25.28997 -23.81369 -22.09499 -21.98686 -21.03880 -20.14141 -19.35074 -17.63641 -16.90792 -16.35043 -16.10022 -15.71336 -15.16221 -14.87993 -14.55672 -14.37254 -14.19112 -14.16041 -13.62905 -13.42065 -13.30408 -12.80916 -12.48801 -12.33401 -12.24454 -12.08497 -11.94196 -11.87557 -11.78850 -11.53079 -11.44326 -11.02935 -10.97044 -10.73948 -10.49826 -10.24640 -10.15739 -10.10179 -9.84035 -9.33298 -9.27301 -9.12255 -7.84664 -7.12121 -7.05108 -4.61274 2.15380 2.45184 2.91031 3.01559 3.15815 3.24629 3.45004 3.87253 4.35875 4.51949 4.60375 4.61550 4.93799 5.05614 5.10569 5.18872 5.28243 5.32856 5.42811 5.47988 5.59443 5.68746 5.72477 5.77561 5.80647 5.84523 5.89067 5.92855 6.11751 6.15563 6.22194 6.23114 6.31426 6.35327 6.44551 6.57636 6.64664 6.96629 7.20043 7.34395 7.45407 7.46684 7.81755 7.98896 8.22240 8.40929 8.56425 8.62460 9.96310 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.004371 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.223635 B = 6404.842962 C = 7138.042793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.110 4.110 8 H 0.095 0.905 9 C 0.515 3.485 10 O -0.514 6.514 11 N -0.671 5.671 12 C 0.171 3.829 13 C -0.210 4.210 14 C -0.100 4.100 15 C -0.017 4.017 16 F -0.156 7.156 17 C 0.080 3.920 18 C -0.433 4.433 19 H 0.097 0.903 20 C 0.083 3.917 21 N -0.803 5.803 22 Si 0.912 3.088 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.238 1.238 26 C -0.246 4.246 27 C -0.090 4.090 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.288 0.712 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -13.347 -5.413 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.147 4.147 7 C -0.132 4.132 8 H 0.113 0.887 9 C 0.302 3.698 10 O -0.390 6.390 11 N -0.315 5.315 12 C 0.079 3.921 13 C -0.231 4.231 14 C -0.120 4.120 15 C -0.037 4.037 16 F -0.136 7.136 17 C 0.076 3.924 18 C -0.461 4.461 19 H 0.115 0.885 20 C -0.136 4.136 21 N -0.426 5.426 22 Si 0.739 3.261 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.162 1.162 26 C -0.267 4.267 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.784 -12.674 -5.246 18.750 hybrid contribution 0.221 -0.718 0.615 0.971 sum -12.563 -13.392 -4.631 18.937 Atomic orbital electron populations 1.21775 0.95700 1.00941 1.01546 1.21436 0.95128 1.02431 0.93696 0.87976 1.21585 0.95122 1.00194 0.98013 1.21579 0.96130 1.01223 0.97299 1.21525 1.00535 0.99260 0.93353 1.21397 0.98179 0.93260 1.00317 0.88709 1.20617 0.81999 0.91397 0.75782 1.90638 1.54673 1.46099 1.47552 1.43603 1.07330 1.07933 1.72633 1.17413 0.94610 0.83272 0.96820 1.20126 1.03099 0.92846 1.07021 1.20490 0.95337 0.96240 0.99922 1.17747 0.97064 0.79258 1.09658 1.91309 1.89837 1.37021 1.95386 1.17436 0.92552 0.90007 0.92410 1.19432 1.03617 1.16860 1.06218 0.88502 1.26161 0.95267 0.94889 0.97296 1.69657 1.17317 1.35735 1.19899 0.86306 0.83401 0.79424 0.76980 1.19844 1.21789 1.16151 1.20466 1.00818 0.96175 1.09285 1.21342 0.92034 1.00298 0.99106 0.93388 0.92774 0.93017 0.92231 0.92445 0.91808 0.91579 0.90864 0.91450 0.76324 0.86535 0.87188 0.90188 0.87439 0.91698 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.11 -1.25 2.43 -90.62 -0.22 -1.47 16 3 H 0.10 1.51 5.51 -51.93 -0.29 1.22 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.12 -1.30 5.70 -26.73 -0.15 -1.45 16 6 C -0.11 -1.02 5.36 -26.73 -0.14 -1.16 16 7 C -0.11 -1.22 3.01 -91.79 -0.28 -1.50 16 8 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.51 8.03 5.38 -10.98 -0.06 7.97 16 10 O -0.51 -9.69 11.33 5.55 0.06 -9.62 16 11 N -0.67 -11.12 5.19 -9.90 -0.05 -11.17 16 12 C 0.17 3.59 6.27 -83.74 -0.52 3.07 16 13 C -0.21 -4.47 8.66 -39.11 -0.34 -4.81 16 14 C -0.10 -2.20 10.00 -39.62 -0.40 -2.60 16 15 C -0.02 -0.41 7.31 -38.62 -0.28 -0.70 16 16 F -0.16 -3.90 16.75 2.25 0.04 -3.86 16 17 C 0.08 2.05 5.19 -106.78 -0.55 1.50 16 18 C -0.43 -11.79 9.31 -37.79 -0.35 -12.14 16 19 H 0.10 2.81 7.95 -52.49 -0.42 2.40 16 20 C 0.08 2.16 5.47 -17.34 -0.09 2.07 16 21 N -0.80 -21.08 13.93 55.55 0.77 -20.31 16 22 Si 0.91 20.42 24.37 -169.99 -4.14 16.27 16 23 H -0.27 -5.66 6.77 56.52 0.38 -5.28 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.24 -5.62 6.48 56.52 0.37 -5.26 16 26 C -0.25 -5.68 6.82 -38.71 -0.26 -5.94 16 27 C -0.09 -0.97 4.37 -26.76 -0.12 -1.09 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.85 7.22 -51.93 -0.37 0.48 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 37 H 0.40 5.43 8.39 -40.82 -0.34 5.09 16 38 H 0.12 2.39 6.39 -52.49 -0.34 2.05 16 39 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.29 6.79 8.30 -40.82 -0.34 6.46 16 41 H 0.11 2.41 4.21 -52.49 -0.22 2.19 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -29.08 336.66 -8.03 -37.11 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.21 Total: 7.10 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -3.57 Total: -20.60 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.72 Total: -31.48 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.14 Total: 16.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.08 -8.03 -37.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184511903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.831 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds