Wall clock time and date at job start Tue Mar 31 2020 09:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46819 * 2 1 4 4 C 1.53002 * 109.47013 * 240.00243 * 2 1 3 5 5 C 1.52994 * 109.47020 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47322 * 60.00018 * 5 4 2 7 7 C 1.53002 * 109.47058 * 299.99959 * 6 5 4 8 8 H 1.08996 * 109.47475 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47251 * 300.00259 * 7 6 5 10 10 O 1.21285 * 120.00336 * 119.99546 * 9 7 6 11 11 N 1.34786 * 119.99805 * 299.99814 * 9 7 6 12 12 C 1.40000 * 119.99719 * 175.09375 * 11 9 7 13 13 C 1.39365 * 119.91541 * 326.48994 * 12 11 9 14 14 C 1.38368 * 120.47314 * 179.76611 * 13 12 11 15 15 C 1.38010 * 120.28389 * 0.51362 * 14 13 12 16 16 F 1.35096 * 120.09360 * 179.72575 * 15 14 13 17 17 C 1.41003 * 119.81267 * 359.74321 * 15 14 13 18 18 C 1.41297 * 120.22734 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00177 * 331.28899 * 18 17 15 20 20 C 1.39926 * 120.00100 * 151.29792 * 18 17 15 21 21 N 1.30849 * 120.00144 * 166.78285 * 20 18 17 22 22 Si 1.86802 * 119.99767 * 346.77982 * 20 18 17 23 23 H 1.48494 * 109.47399 * 95.30186 * 22 20 18 24 24 H 1.48501 * 109.46708 * 215.30488 * 22 20 18 25 25 H 1.48502 * 109.46973 * 335.30110 * 22 20 18 26 26 C 1.38148 * 119.90647 * 146.76883 * 12 11 9 27 27 C 1.52997 * 109.46912 * 120.00101 * 2 1 3 28 28 H 1.08993 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46942 * 299.99714 * 1 2 3 30 30 H 1.09006 * 109.46655 * 59.99944 * 1 2 3 31 31 H 1.08998 * 109.46998 * 60.00124 * 4 2 1 32 32 H 1.09004 * 109.46743 * 300.00087 * 4 2 1 33 33 H 1.09001 * 109.47628 * 180.02562 * 5 4 2 34 34 H 1.09006 * 109.46836 * 299.99804 * 5 4 2 35 35 H 1.08995 * 109.47442 * 59.99620 * 6 5 4 36 36 H 1.08996 * 109.47354 * 180.02562 * 6 5 4 37 37 H 0.96999 * 119.99450 * 355.08914 * 11 9 7 38 38 H 1.08002 * 119.76213 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.85625 * 180.26362 * 14 13 12 40 40 H 0.97001 * 119.99798 * 179.97438 * 21 20 18 41 41 H 1.07994 * 120.14501 * 359.94946 * 26 12 11 42 42 H 1.09003 * 109.46800 * 60.00318 * 27 2 1 43 43 H 1.08996 * 109.47469 * 299.99862 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2495 8 1 3.9321 -1.2365 2.1395 9 6 4.0723 0.6984 1.2499 10 8 3.2845 1.6206 1.2498 11 7 5.3976 0.9443 1.2502 12 6 5.8654 2.2597 1.1468 13 6 5.1591 3.1910 0.3878 14 6 5.6085 4.4954 0.2817 15 6 6.7687 4.8858 0.9189 16 9 7.2068 6.1590 0.8082 17 6 7.4957 3.9521 1.6856 18 6 8.6844 4.3425 2.3422 19 1 9.2894 5.1392 1.9352 20 6 9.0778 3.6968 3.5196 21 7 10.2880 3.8681 3.9867 22 14 7.8752 2.5904 4.4246 23 1 8.0889 1.1813 4.0077 24 1 8.0954 2.7126 5.8881 25 1 6.4851 2.9980 4.0974 26 6 7.0292 2.6296 1.7928 27 6 2.0400 -0.7213 1.2492 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6767 -0.2073 -2.1392 32 1 1.6767 -1.7489 -1.2493 33 1 3.9334 -1.2352 -2.1392 34 1 3.9337 0.3058 -1.2487 35 1 3.7158 -2.4709 0.0000 36 1 5.1695 -1.4434 0.0007 37 1 6.0270 0.2098 1.3221 38 1 4.2523 2.8935 -0.1177 39 1 5.0510 5.2100 -0.3056 40 1 10.5605 3.4208 4.8031 41 1 7.5781 1.9066 2.3777 42 1 1.6767 -1.7490 1.2491 43 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184511903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:26 Heat of formation + Delta-G solvation = -105.340325 kcal Electronic energy + Delta-G solvation = -25573.603845 eV Core-core repulsion = 21916.882061 eV Total energy + Delta-G solvation = -3656.721784 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31511 -41.88757 -39.74590 -38.18039 -36.06550 -35.27768 -33.57463 -32.53889 -31.91743 -29.94224 -27.21338 -27.19265 -24.94248 -23.89644 -22.91223 -22.28111 -21.41075 -20.56500 -19.45553 -18.55302 -17.97676 -17.51435 -16.88625 -16.77450 -16.32111 -16.10063 -15.76161 -15.43546 -15.31967 -15.20738 -14.63444 -14.58220 -14.20489 -14.04824 -13.85635 -13.61356 -13.27929 -13.21324 -13.03136 -12.91848 -12.76001 -12.64642 -12.47997 -12.32413 -12.08674 -11.80539 -11.70864 -11.54427 -11.10496 -10.98165 -10.90237 -10.83865 -10.43395 -9.71180 -8.99145 -8.84555 -6.63962 0.41639 0.60612 1.16969 1.33229 1.44331 1.69881 2.05010 2.15594 2.51062 3.25359 3.59762 3.78450 3.81555 3.83643 4.03214 4.10414 4.27572 4.28764 4.43908 4.49991 4.53313 4.54687 4.65816 4.73406 4.78530 4.85305 4.86468 4.95808 4.99098 5.09260 5.11096 5.15206 5.19749 5.35067 5.36401 5.41960 5.45869 5.53095 5.56884 5.57362 5.68702 5.77822 5.98966 6.19245 6.52995 6.57259 6.63422 7.25898 8.09530 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.004371 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.223635 B = 6404.842962 C = 7138.042793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.105 4.105 7 C -0.102 4.102 8 H 0.123 0.877 9 C 0.511 3.489 10 O -0.549 6.549 11 N -0.666 5.666 12 C 0.182 3.818 13 C -0.202 4.202 14 C -0.094 4.094 15 C -0.050 4.050 16 F -0.167 7.167 17 C 0.066 3.934 18 C -0.473 4.473 19 H 0.055 0.945 20 C 0.050 3.950 21 N -0.840 5.840 22 Si 0.966 3.034 23 H -0.238 1.238 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.247 4.247 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.299 0.701 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.614 -17.501 -5.499 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.164 4.164 6 C -0.143 4.143 7 C -0.123 4.123 8 H 0.140 0.860 9 C 0.301 3.699 10 O -0.426 6.426 11 N -0.312 5.312 12 C 0.087 3.913 13 C -0.223 4.223 14 C -0.113 4.113 15 C -0.071 4.071 16 F -0.146 7.146 17 C 0.062 3.938 18 C -0.502 4.502 19 H 0.073 0.927 20 C -0.166 4.166 21 N -0.465 5.465 22 Si 0.789 3.211 23 H -0.162 1.162 24 H -0.205 1.205 25 H -0.183 1.183 26 C -0.269 4.269 27 C -0.127 4.127 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.257 0.743 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.114 0.886 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.937 -16.866 -5.345 23.155 hybrid contribution 0.729 0.599 0.491 1.064 sum -14.208 -16.267 -4.854 22.137 Atomic orbital electron populations 1.21748 0.94826 1.02058 1.01063 1.21377 0.95961 1.00589 0.95055 0.91869 1.21561 0.94881 1.01143 0.96930 1.21597 0.96382 0.99645 0.98822 1.21581 1.01139 1.00230 0.91336 1.21503 0.98258 0.89956 1.02600 0.85956 1.21600 0.80967 0.93247 0.74053 1.90641 1.55383 1.47825 1.48702 1.43647 1.08431 1.06508 1.72630 1.17461 0.93435 0.85375 0.95001 1.20402 1.03042 0.92655 1.06189 1.20774 0.94260 0.97170 0.99124 1.18075 0.98443 0.79171 1.11385 1.91270 1.90129 1.37590 1.95596 1.17610 0.92266 0.91365 0.92600 1.19343 1.04984 1.17559 1.08332 0.92658 1.26845 0.96642 0.95957 0.97170 1.69676 1.18612 1.37293 1.20969 0.85500 0.79756 0.79402 0.76436 1.16211 1.20479 1.18285 1.20560 1.01555 0.95299 1.09441 1.21380 0.91803 1.01679 0.97868 0.91380 0.93723 0.93144 0.92764 0.90146 0.90389 0.94868 0.87786 0.90582 0.74263 0.85430 0.84672 0.89062 0.86420 0.88592 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.19 71.98 0.66 -1.83 16 2 C -0.11 -2.31 2.43 -10.79 -0.03 -2.34 16 3 H 0.06 1.83 5.51 -2.39 -0.01 1.82 16 4 C -0.11 -1.82 5.20 30.59 0.16 -1.66 16 5 C -0.13 -2.24 5.70 30.59 0.17 -2.06 16 6 C -0.11 -1.46 5.36 30.59 0.16 -1.29 16 7 C -0.10 -1.85 3.01 -11.55 -0.03 -1.88 16 8 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 9 C 0.51 14.65 5.38 87.66 0.47 15.12 16 10 O -0.55 -19.97 11.33 -3.04 -0.03 -20.01 16 11 N -0.67 -20.24 5.19 -303.60 -1.58 -21.82 16 12 C 0.18 7.33 6.27 38.09 0.24 7.57 16 13 C -0.20 -8.39 8.66 22.57 0.20 -8.20 16 14 C -0.09 -4.11 10.00 22.25 0.22 -3.88 16 15 C -0.05 -2.55 7.31 22.89 0.17 -2.38 16 16 F -0.17 -8.71 16.75 44.97 0.75 -7.96 16 17 C 0.07 3.44 5.19 -21.26 -0.11 3.33 16 18 C -0.47 -27.16 9.31 23.43 0.22 -26.95 16 19 H 0.06 3.50 7.95 -2.91 -0.02 3.47 16 20 C 0.05 2.64 5.47 85.25 0.47 3.10 16 21 N -0.84 -45.44 13.93 21.82 0.30 -45.14 16 22 Si 0.97 41.45 24.37 68.60 1.67 43.13 16 23 H -0.24 -8.83 6.77 99.48 0.67 -8.16 16 24 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.26 -11.86 6.48 99.48 0.64 -11.22 16 26 C -0.25 -11.23 6.82 22.84 0.16 -11.08 16 27 C -0.09 -1.62 4.37 30.58 0.13 -1.49 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.03 0.80 7.22 -2.38 -0.02 0.78 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 37 H 0.42 9.77 8.39 -92.71 -0.78 8.99 16 38 H 0.13 5.08 6.39 -2.91 -0.02 5.06 16 39 H 0.14 5.13 8.06 -2.91 -0.02 5.10 16 40 H 0.30 14.30 8.30 -92.71 -0.77 13.53 16 41 H 0.12 5.05 4.21 -2.91 -0.01 5.04 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -67.00 336.66 4.53 -62.47 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.16 Total: 25.23 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 3.26 Total: -35.92 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.27 Total: -66.95 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.03 Total: -20.01 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 0.75 Total: -7.96 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.67 Total: 43.13 kcal Total: -67.00 4.53 -62.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184511903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.870 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds