Wall clock time and date at job start Tue Mar 31 2020 09:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46648 * 2 1 4 4 C 1.52997 * 109.47069 * 119.99713 * 2 1 3 5 5 C 1.53007 * 109.47069 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47095 * 300.00350 * 5 4 2 7 7 C 1.52998 * 109.47110 * 59.99720 * 6 5 4 8 8 H 1.08996 * 109.47132 * 60.00271 * 7 6 5 9 9 C 1.50699 * 109.47071 * 179.97438 * 7 6 5 10 10 O 1.21295 * 120.00109 * 120.00019 * 9 7 6 11 11 N 1.34777 * 120.00200 * 300.00146 * 9 7 6 12 12 C 1.40004 * 120.00091 * 175.48985 * 11 9 7 13 13 C 1.39369 * 119.91295 * 215.05254 * 12 11 9 14 14 C 1.38366 * 120.46993 * 180.02562 * 13 12 11 15 15 C 1.38008 * 120.29137 * 0.04361 * 14 13 12 16 16 F 1.35089 * 120.09448 * 179.97438 * 15 14 13 17 17 C 1.41009 * 119.80988 * 359.97438 * 15 14 13 18 18 C 1.41287 * 120.22828 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00088 * 334.98363 * 18 17 15 20 20 C 1.39927 * 119.99788 * 154.70980 * 18 17 15 21 21 N 1.30852 * 119.99967 * 345.22039 * 20 18 17 22 22 Si 1.86802 * 119.99700 * 165.22339 * 20 18 17 23 23 H 1.48502 * 109.46972 * 90.00417 * 22 20 18 24 24 H 1.48506 * 109.46658 * 209.99563 * 22 20 18 25 25 H 1.48497 * 109.47270 * 329.99824 * 22 20 18 26 26 C 1.38146 * 119.91273 * 35.35344 * 12 11 9 27 27 C 1.52999 * 109.47418 * 299.99882 * 7 6 5 28 28 H 1.08998 * 109.46648 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46989 * 299.99619 * 1 2 3 30 30 H 1.09003 * 109.47233 * 60.00242 * 1 2 3 31 31 H 1.08993 * 109.47468 * 300.00517 * 4 2 1 32 32 H 1.08998 * 109.47151 * 60.00595 * 4 2 1 33 33 H 1.08998 * 109.46648 * 60.00287 * 5 4 2 34 34 H 1.08996 * 109.47070 * 180.02562 * 5 4 2 35 35 H 1.08996 * 109.46902 * 299.99850 * 6 5 4 36 36 H 1.08999 * 109.47122 * 179.97438 * 6 5 4 37 37 H 0.97002 * 119.99671 * 355.49341 * 11 9 7 38 38 H 1.08001 * 119.76162 * 0.02562 * 13 12 11 39 39 H 1.08002 * 119.85388 * 180.02562 * 14 13 12 40 40 H 0.96999 * 119.99735 * 179.97438 * 21 20 18 41 41 H 1.08005 * 120.14338 * 359.97438 * 26 12 11 42 42 H 1.09003 * 109.47281 * 180.02562 * 27 7 6 43 43 H 1.08996 * 109.47287 * 300.00295 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0003 7 6 3.5706 -0.7203 -1.2489 8 1 3.9335 0.3075 -1.2487 9 6 4.0739 -1.4299 -2.4793 10 8 3.2864 -1.8913 -3.2782 11 7 5.3992 -1.5520 -2.6922 12 6 5.8675 -2.2921 -3.7845 13 6 7.0421 -3.0334 -3.6694 14 6 7.5157 -3.7685 -4.7417 15 6 6.8292 -3.7746 -5.9389 16 9 7.2955 -4.4933 -6.9834 17 6 5.6397 -3.0286 -6.0688 18 6 4.9301 -3.0282 -7.2905 19 1 5.4478 -3.2341 -8.2157 20 6 3.5556 -2.7666 -7.3011 21 7 2.8729 -2.8087 -6.1855 22 14 2.6951 -2.3574 -8.9078 23 1 2.2098 -3.6093 -9.5423 24 1 1.5427 -1.4605 -8.6377 25 1 3.6485 -1.6771 -9.8207 26 6 5.1675 -2.2806 -4.9754 27 6 2.0406 -0.7209 -1.2492 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2074 2.1392 32 1 1.6768 -1.7488 1.2493 33 1 3.9330 0.3072 1.2498 34 1 3.9334 -1.2348 2.1393 35 1 3.7177 -2.4692 0.0001 36 1 5.1706 -1.4407 0.0003 37 1 6.0285 -1.1272 -2.0885 38 1 7.5865 -3.0340 -2.7366 39 1 8.4268 -4.3397 -4.6415 40 1 1.9201 -2.6271 -6.1929 41 1 4.2597 -1.7024 -5.0653 42 1 1.6772 -0.2074 -2.1395 43 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184511905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:29 Heat of formation + Delta-G solvation = -109.641091 kcal Electronic energy + Delta-G solvation = -25210.030484 eV Core-core repulsion = 21553.122205 eV Total energy + Delta-G solvation = -3656.908279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14911 -41.44383 -39.51598 -38.33237 -36.07685 -34.96159 -33.57980 -31.94282 -31.65436 -29.58968 -27.34492 -27.19875 -24.92129 -23.44327 -22.59501 -22.30379 -20.89036 -20.58683 -19.55294 -17.93197 -17.90458 -17.64737 -16.77490 -16.37013 -15.98874 -15.96603 -15.83062 -15.43870 -15.08248 -14.72702 -14.70679 -14.34514 -14.14628 -13.75197 -13.59745 -13.46481 -13.34463 -13.27431 -12.87625 -12.73576 -12.69240 -12.43634 -12.33742 -12.12420 -12.08186 -11.81544 -11.51276 -11.36990 -11.26339 -11.14948 -10.94492 -10.70826 -10.29534 -9.47989 -8.78021 -8.46125 -6.40310 0.71750 0.94265 1.32554 1.42040 1.48583 1.86770 2.17435 2.33200 2.70948 3.53116 3.68633 3.74162 3.79595 4.08946 4.18453 4.20479 4.32284 4.35533 4.41728 4.55944 4.58592 4.67942 4.70822 4.80177 4.89075 5.00462 5.01653 5.10853 5.13159 5.16415 5.19630 5.24441 5.26314 5.33492 5.37103 5.40771 5.46010 5.63583 5.67702 5.80450 5.84275 6.10085 6.25492 6.56340 6.75501 6.83003 6.91892 7.51749 8.29081 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.004446 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.193506 B = 6296.429735 C = 8003.553752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.089 4.089 8 H 0.119 0.881 9 C 0.486 3.514 10 O -0.536 6.536 11 N -0.659 5.659 12 C 0.141 3.859 13 C -0.229 4.229 14 C -0.104 4.104 15 C -0.081 4.081 16 F -0.173 7.173 17 C 0.063 3.937 18 C -0.496 4.496 19 H 0.070 0.930 20 C 0.030 3.970 21 N -0.785 5.785 22 Si 0.980 3.020 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.258 1.258 26 C -0.170 4.170 27 C -0.091 4.091 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.286 0.714 41 H 0.129 0.871 42 H 0.045 0.955 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 8.533 17.003 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.111 4.111 8 H 0.137 0.863 9 C 0.274 3.726 10 O -0.411 6.411 11 N -0.306 5.306 12 C 0.047 3.953 13 C -0.250 4.250 14 C -0.123 4.123 15 C -0.102 4.102 16 F -0.152 7.152 17 C 0.060 3.940 18 C -0.524 4.524 19 H 0.088 0.912 20 C -0.188 4.188 21 N -0.408 5.408 22 Si 0.800 3.200 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.181 1.181 26 C -0.192 4.192 27 C -0.129 4.129 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.257 0.743 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.096 0.904 41 H 0.147 0.853 42 H 0.064 0.936 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.111 8.206 16.564 18.605 hybrid contribution -0.116 -0.306 -1.227 1.270 sum -2.227 7.900 15.336 17.394 Atomic orbital electron populations 1.21822 0.95031 1.01558 1.02054 1.21127 0.95723 0.99812 0.93674 0.89864 1.21635 0.95942 1.00324 0.97369 1.21516 0.95218 1.01504 0.96525 1.21543 1.01369 0.98729 0.92822 1.21338 0.97335 1.01047 0.91343 0.86348 1.21777 0.82039 0.80238 0.88534 1.90920 1.55805 1.47302 1.47082 1.43353 1.07734 1.52062 1.27446 1.17782 0.95134 0.95344 0.87030 1.20338 0.99576 1.05342 0.99704 1.20639 0.99775 1.00550 0.91335 1.18235 1.01487 1.04132 0.86325 1.91213 1.88673 1.77228 1.58103 1.17898 0.90776 0.90402 0.94965 1.19643 0.94193 1.44561 0.94050 0.91173 1.26800 0.97954 0.92351 1.01685 1.69997 1.09326 1.32112 1.29357 0.85239 0.77945 0.79313 0.77464 1.18617 1.18861 1.18138 1.21349 1.02796 1.03421 0.91593 1.21350 0.92876 1.00432 0.98254 0.93557 0.90929 0.93337 0.90125 0.93025 0.90087 0.90274 0.93332 0.89844 0.74310 0.83744 0.84642 0.90378 0.85313 0.93582 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.20 71.98 0.66 -1.95 16 2 C -0.08 -1.54 2.72 -10.79 -0.03 -1.57 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.12 -1.73 5.20 30.60 0.16 -1.57 16 5 C -0.11 -1.47 5.92 30.60 0.18 -1.29 16 6 C -0.11 -2.02 5.11 30.59 0.16 -1.87 16 7 C -0.09 -2.18 2.52 -11.54 -0.03 -2.21 16 8 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 9 C 0.49 17.78 6.99 87.66 0.61 18.39 16 10 O -0.54 -26.15 13.43 -3.08 -0.04 -26.19 16 11 N -0.66 -22.73 5.20 -303.60 -1.58 -24.31 16 12 C 0.14 6.34 6.29 38.09 0.24 6.58 16 13 C -0.23 -9.25 9.97 22.57 0.22 -9.03 16 14 C -0.10 -4.62 10.00 22.25 0.22 -4.39 16 15 C -0.08 -4.37 7.31 22.89 0.17 -4.21 16 16 F -0.17 -9.31 16.71 44.97 0.75 -8.56 16 17 C 0.06 3.69 5.58 -21.26 -0.12 3.57 16 18 C -0.50 -29.23 8.78 23.43 0.21 -29.02 16 19 H 0.07 4.10 7.72 -2.91 -0.02 4.08 16 20 C 0.03 1.64 5.20 85.25 0.44 2.09 16 21 N -0.78 -44.73 10.85 21.82 0.24 -44.49 16 22 Si 0.98 41.48 29.59 68.60 2.03 43.51 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 26 C -0.17 -9.34 7.32 22.83 0.17 -9.17 16 27 C -0.09 -2.39 3.78 30.59 0.12 -2.28 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.30 7.67 -2.39 -0.02 1.28 16 37 H 0.42 10.20 8.38 -92.71 -0.78 9.42 16 38 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.14 5.05 8.06 -2.91 -0.02 5.02 16 40 H 0.29 15.13 8.30 -92.71 -0.77 14.37 16 41 H 0.13 7.64 4.29 -2.91 -0.01 7.62 16 42 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 43 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 Total: -1.00 -72.88 349.05 5.02 -67.86 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.24 Total: 30.11 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.38 Total: -37.93 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.34 Total: -68.80 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.75 Total: -8.56 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -72.88 5.02 -67.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184511905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.780 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds