Wall clock time and date at job start Tue Mar 31 2020 08:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 N 1.46494 * 109.47526 * 120.00404 * 2 1 3 5 5 C 1.36454 * 125.48677 * 299.69407 * 4 2 1 6 6 C 1.34577 * 108.55705 * 179.88325 * 5 4 2 7 7 C 1.41910 * 107.32610 * 0.37137 * 6 5 4 8 8 C 1.48150 * 126.47872 * 179.80707 * 7 6 5 9 9 C 1.36692 * 120.34502 * 129.67761 * 8 7 6 10 10 C 1.41091 * 120.59574 * 179.77612 * 9 8 7 11 11 C 1.41216 * 119.48717 * 180.23643 * 10 9 8 12 12 H 1.08002 * 120.00197 * 25.91098 * 11 10 9 13 13 C 1.39901 * 119.99808 * 205.91015 * 11 10 9 14 14 N 1.30853 * 119.99676 * 18.23560 * 13 11 10 15 15 Si 1.86798 * 119.99973 * 198.23412 * 13 11 10 16 16 H 1.48497 * 109.47186 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46725 * 120.00186 * 15 13 11 18 18 H 1.48499 * 109.47208 * 239.99827 * 15 13 11 19 19 C 1.39994 * 121.02191 * 0.50300 * 10 9 8 20 20 C 1.39896 * 120.10845 * 359.75879 * 19 10 9 21 21 C 1.40852 * 121.13445 * 179.97438 * 20 19 10 22 22 C 1.36197 * 119.60567 * 180.02562 * 21 20 19 23 23 C 1.39236 * 120.93745 * 0.02562 * 22 21 20 24 24 C 1.36552 * 120.98360 * 359.97438 * 23 22 21 25 25 C 1.39794 * 119.73340 * 0.02562 * 24 23 22 26 26 C 1.36089 * 125.48880 * 119.99665 * 4 2 1 27 27 H 1.09002 * 109.46846 * 299.99356 * 1 2 3 28 28 H 1.08996 * 109.47277 * 59.99510 * 1 2 3 29 29 H 1.09004 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46846 * 240.00644 * 2 1 3 31 31 H 1.08996 * 109.47068 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46818 * 300.00643 * 3 2 1 33 33 H 1.09002 * 109.46605 * 60.00496 * 3 2 1 34 34 H 1.08001 * 125.72360 * 359.97438 * 5 4 2 35 35 H 1.08005 * 126.33642 * 180.09961 * 6 5 4 36 36 H 1.08006 * 119.70054 * 359.97438 * 9 8 7 37 37 H 0.97007 * 119.99280 * 179.97438 * 14 13 11 38 38 H 1.07992 * 119.94373 * 179.73127 * 19 10 9 39 39 H 1.08007 * 120.19928 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.53479 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.51187 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.13330 * 180.02562 * 24 23 22 43 43 H 1.07996 * 125.97479 * 359.94711 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.7636 -0.3200 2.4843 6 6 2.3737 -1.1909 3.3092 7 6 3.0455 -2.1418 2.4978 8 6 3.8556 -3.2882 2.9715 9 6 3.6306 -4.5432 2.4788 10 6 4.4021 -5.6380 2.9228 11 6 4.1531 -6.9236 2.3943 12 1 3.7164 -7.0285 1.4121 13 6 4.4721 -8.0615 3.1431 14 7 4.6580 -7.9638 4.4346 15 14 4.6327 -9.7202 2.2991 16 1 4.3767 -9.5625 0.8449 17 1 6.0048 -10.2496 2.5052 18 1 3.6450 -10.6670 2.8763 19 6 5.4068 -5.4703 3.8831 20 6 5.6641 -4.2026 4.4157 21 6 6.6693 -4.0094 5.3832 22 6 6.8931 -2.7616 5.8811 23 6 6.1415 -1.6726 5.4477 24 6 5.1594 -1.8243 4.5112 25 6 4.9005 -3.0899 3.9769 26 6 2.8041 -1.8018 1.2012 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.1704 0.5289 2.7907 35 1 2.3588 -1.1677 4.3889 36 1 2.8575 -4.6977 1.7406 37 1 4.8788 -8.7529 4.9538 38 1 5.9839 -6.3212 4.2136 39 1 7.2592 -4.8457 5.7282 40 1 7.6639 -2.6148 6.6232 41 1 6.3381 -0.6932 5.8584 42 1 4.5850 -0.9700 4.1846 43 1 3.1716 -2.3230 0.3297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239079294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:49 Heat of formation + Delta-G solvation = 72.676306 kcal Electronic energy + Delta-G solvation = -23750.193416 eV Core-core repulsion = 20531.960237 eV Total energy + Delta-G solvation = -3218.233179 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93467 -38.57150 -35.71117 -35.34409 -33.29326 -31.44872 -29.54480 -29.14429 -29.00214 -27.55235 -26.89966 -25.16093 -22.59883 -22.02788 -21.27803 -20.83060 -19.15715 -18.97555 -17.42727 -16.77795 -15.92498 -15.65529 -14.88510 -14.71696 -14.59285 -14.26418 -13.75184 -13.36222 -13.13309 -12.93174 -12.76057 -12.45787 -12.40679 -12.28429 -12.06940 -12.02241 -11.92349 -11.63812 -11.47624 -11.41647 -11.23195 -11.07007 -10.80281 -10.62152 -10.35736 -9.93860 -9.52944 -9.42990 -9.05115 -8.57706 -8.07847 -7.70009 -7.35235 -6.78423 -6.43872 -4.29656 1.82566 2.42747 2.60313 2.99828 3.07148 3.09803 3.11865 3.17060 3.78313 3.91042 4.16926 4.41602 4.72723 4.82584 4.91381 5.11481 5.22992 5.41889 5.43284 5.47405 5.60559 5.72099 5.75584 5.85295 5.88066 5.88351 5.94435 6.09546 6.12127 6.36251 6.54140 6.55752 6.72087 6.77522 6.88413 7.04727 7.10390 7.17944 7.35026 7.47509 7.52054 7.59757 7.61848 7.71624 7.73745 7.91162 8.02199 8.22219 8.29527 8.63334 8.84743 8.92775 10.15798 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004368 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.044113 B = 6408.111006 C = 8312.061709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.162 4.162 4 N -0.446 5.446 5 C -0.024 4.024 6 C -0.182 4.182 7 C -0.101 4.101 8 C -0.008 4.008 9 C -0.139 4.139 10 C 0.104 3.896 11 C -0.452 4.452 12 H 0.079 0.921 13 C 0.074 3.926 14 N -0.780 5.780 15 Si 0.906 3.094 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.212 4.212 20 C 0.002 3.998 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.198 4.198 24 C -0.073 4.073 25 C -0.119 4.119 26 C -0.011 4.011 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.281 0.719 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 12.608 -6.311 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.124 5.124 5 C -0.152 4.152 6 C -0.207 4.207 7 C -0.107 4.107 8 C -0.009 4.009 9 C -0.158 4.158 10 C 0.102 3.898 11 C -0.480 4.480 12 H 0.097 0.903 13 C -0.145 4.145 14 N -0.404 5.404 15 Si 0.730 3.270 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.200 1.200 19 C -0.232 4.232 20 C 0.001 3.999 21 C -0.161 4.161 22 C -0.137 4.137 23 C -0.217 4.217 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.140 4.140 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.169 0.831 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.128 0.872 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.006 12.637 -6.426 15.035 hybrid contribution 0.037 -0.856 -0.142 0.869 sum -4.969 11.781 -6.568 14.374 Atomic orbital electron populations 1.22171 0.93893 1.03161 1.02761 1.21325 0.95045 0.93786 0.87165 1.22170 1.02230 0.94798 1.02774 1.44019 1.40149 1.22748 1.05438 1.21441 1.07868 1.03164 0.82751 1.20969 1.03589 0.97341 0.98758 1.18339 1.02691 0.97904 0.91763 1.18663 0.94565 0.91061 0.96626 1.21095 1.00224 0.92136 1.02333 1.17396 0.89231 0.91984 0.91215 1.19644 1.35619 0.90231 1.02550 0.90338 1.25899 0.92761 1.01419 0.94382 1.69877 1.32532 1.31869 1.06112 0.86303 0.78788 0.81122 0.80799 1.18380 1.19635 1.19980 1.21131 1.02250 0.94396 1.05415 1.17937 0.93858 0.93531 0.94532 1.20877 0.99686 0.96345 0.99154 1.20461 0.99667 0.93399 1.00195 1.20326 1.00835 0.97546 1.02998 1.20792 0.96383 0.96263 0.95650 1.18540 0.99697 0.92882 1.00855 1.21857 1.01563 0.92141 0.98465 0.91818 0.91080 0.91681 0.88694 0.91719 0.91079 0.91813 0.83056 0.84921 0.88323 0.90815 0.86304 0.87558 0.88416 0.88520 0.87193 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.24 37.16 0.34 -0.97 16 2 C 0.13 1.22 3.54 -67.93 -0.24 0.98 16 3 C -0.16 -1.29 9.23 37.16 0.34 -0.94 16 4 N -0.45 -5.99 2.61 -109.76 -0.29 -6.27 16 5 C -0.02 -0.34 10.30 -16.79 -0.17 -0.51 16 6 C -0.18 -3.11 8.90 -39.47 -0.35 -3.46 16 7 C -0.10 -1.93 5.11 -105.16 -0.54 -2.47 16 8 C -0.01 -0.19 5.89 -103.13 -0.61 -0.80 16 9 C -0.14 -3.35 9.29 -39.06 -0.36 -3.71 16 10 C 0.10 2.75 5.55 -107.03 -0.59 2.16 16 11 C -0.45 -11.74 8.99 -37.83 -0.34 -12.08 16 12 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 13 C 0.07 1.84 5.09 -17.35 -0.09 1.76 16 14 N -0.78 -20.16 11.00 55.54 0.61 -19.54 16 15 Si 0.91 18.42 29.60 -169.99 -5.03 13.39 16 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.21 -5.63 8.39 -38.30 -0.32 -5.95 16 20 C 0.00 0.04 5.74 -106.88 -0.61 -0.57 16 21 C -0.14 -3.19 9.78 -39.33 -0.38 -3.57 16 22 C -0.12 -2.39 9.95 -39.95 -0.40 -2.79 16 23 C -0.20 -3.92 9.96 -39.82 -0.40 -4.32 16 24 C -0.07 -1.53 9.21 -39.61 -0.36 -1.90 16 25 C -0.12 -2.81 5.91 -104.65 -0.62 -3.43 16 26 C -0.01 -0.18 11.26 -16.40 -0.18 -0.37 16 27 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 34 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.25 7.96 -52.48 -0.42 1.83 16 36 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.12 3.27 6.15 -52.49 -0.32 2.95 16 39 H 0.11 2.24 8.06 -52.48 -0.42 1.81 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 2.13 5.88 -52.49 -0.31 1.82 16 43 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -29.10 356.85 -11.29 -40.38 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.07 Total: 9.60 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: -5.89 Total: -42.93 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.32 Total: -25.82 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.10 -11.29 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239079294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.059 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds