Wall clock time and date at job start Tue Mar 31 2020 08:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 N 1.46494 * 109.47526 * 120.00404 * 2 1 3 5 5 C 1.36454 * 125.48677 * 299.69407 * 4 2 1 6 6 C 1.34577 * 108.55705 * 179.88325 * 5 4 2 7 7 C 1.41910 * 107.32610 * 0.37137 * 6 5 4 8 8 C 1.48150 * 126.47872 * 179.80707 * 7 6 5 9 9 C 1.36692 * 120.34502 * 129.67761 * 8 7 6 10 10 C 1.41091 * 120.59574 * 179.77612 * 9 8 7 11 11 C 1.41216 * 119.48717 * 180.23643 * 10 9 8 12 12 H 1.08002 * 120.00197 * 25.91098 * 11 10 9 13 13 C 1.39901 * 119.99808 * 205.91015 * 11 10 9 14 14 N 1.30853 * 119.99676 * 18.23560 * 13 11 10 15 15 Si 1.86798 * 119.99973 * 198.23412 * 13 11 10 16 16 H 1.48497 * 109.47186 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46725 * 120.00186 * 15 13 11 18 18 H 1.48499 * 109.47208 * 239.99827 * 15 13 11 19 19 C 1.39994 * 121.02191 * 0.50300 * 10 9 8 20 20 C 1.39896 * 120.10845 * 359.75879 * 19 10 9 21 21 C 1.40852 * 121.13445 * 179.97438 * 20 19 10 22 22 C 1.36197 * 119.60567 * 180.02562 * 21 20 19 23 23 C 1.39236 * 120.93745 * 0.02562 * 22 21 20 24 24 C 1.36552 * 120.98360 * 359.97438 * 23 22 21 25 25 C 1.39794 * 119.73340 * 0.02562 * 24 23 22 26 26 C 1.36089 * 125.48880 * 119.99665 * 4 2 1 27 27 H 1.09002 * 109.46846 * 299.99356 * 1 2 3 28 28 H 1.08996 * 109.47277 * 59.99510 * 1 2 3 29 29 H 1.09004 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46846 * 240.00644 * 2 1 3 31 31 H 1.08996 * 109.47068 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46818 * 300.00643 * 3 2 1 33 33 H 1.09002 * 109.46605 * 60.00496 * 3 2 1 34 34 H 1.08001 * 125.72360 * 359.97438 * 5 4 2 35 35 H 1.08005 * 126.33642 * 180.09961 * 6 5 4 36 36 H 1.08006 * 119.70054 * 359.97438 * 9 8 7 37 37 H 0.97007 * 119.99280 * 179.97438 * 14 13 11 38 38 H 1.07992 * 119.94373 * 179.73127 * 19 10 9 39 39 H 1.08007 * 120.19928 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.53479 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.51187 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.13330 * 180.02562 * 24 23 22 43 43 H 1.07996 * 125.97479 * 359.94711 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.7636 -0.3200 2.4843 6 6 2.3737 -1.1909 3.3092 7 6 3.0455 -2.1418 2.4978 8 6 3.8556 -3.2882 2.9715 9 6 3.6306 -4.5432 2.4788 10 6 4.4021 -5.6380 2.9228 11 6 4.1531 -6.9236 2.3943 12 1 3.7164 -7.0285 1.4121 13 6 4.4721 -8.0615 3.1431 14 7 4.6580 -7.9638 4.4346 15 14 4.6327 -9.7202 2.2991 16 1 4.3767 -9.5625 0.8449 17 1 6.0048 -10.2496 2.5052 18 1 3.6450 -10.6670 2.8763 19 6 5.4068 -5.4703 3.8831 20 6 5.6641 -4.2026 4.4157 21 6 6.6693 -4.0094 5.3832 22 6 6.8931 -2.7616 5.8811 23 6 6.1415 -1.6726 5.4477 24 6 5.1594 -1.8243 4.5112 25 6 4.9005 -3.0899 3.9769 26 6 2.8041 -1.8018 1.2012 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.1704 0.5289 2.7907 35 1 2.3588 -1.1677 4.3889 36 1 2.8575 -4.6977 1.7406 37 1 4.8788 -8.7529 4.9538 38 1 5.9839 -6.3212 4.2136 39 1 7.2592 -4.8457 5.7282 40 1 7.6639 -2.6148 6.6232 41 1 6.3381 -0.6932 5.8584 42 1 4.5850 -0.9700 4.1846 43 1 3.1716 -2.3230 0.3297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239079294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:48 Heat of formation + Delta-G solvation = 61.380190 kcal Electronic energy + Delta-G solvation = -23750.683252 eV Core-core repulsion = 20531.960237 eV Total energy + Delta-G solvation = -3218.723015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13165 -40.30186 -37.37825 -36.45215 -35.00956 -33.10407 -31.29118 -30.60755 -30.32619 -28.43202 -28.15633 -27.00798 -24.02473 -23.36749 -23.00138 -22.38100 -20.56714 -20.25945 -19.00477 -17.96550 -17.73306 -17.32596 -16.59578 -16.06146 -15.63091 -15.45284 -15.09227 -14.81931 -14.45653 -14.32213 -14.16657 -14.06151 -13.70677 -13.52893 -13.45052 -13.20451 -13.07533 -13.00956 -12.90643 -12.74932 -12.54637 -12.38844 -12.21564 -12.02055 -11.95084 -11.66797 -11.30971 -11.20963 -10.87384 -10.33136 -9.37112 -9.18789 -9.02686 -8.64188 -8.18284 -6.27175 0.08147 0.65139 1.30257 1.35322 1.38935 1.52735 1.61425 2.08259 2.17463 2.20885 2.43646 3.08067 3.70426 3.84076 4.03943 4.09547 4.15904 4.19417 4.24900 4.36630 4.38733 4.50941 4.64938 4.69411 4.69752 4.83466 4.85082 4.86535 4.94262 4.98881 5.02616 5.13547 5.21554 5.25739 5.27401 5.33723 5.35298 5.56169 5.66683 5.79378 5.81170 5.92878 6.04136 6.13145 6.13480 6.28273 6.40724 6.51663 6.63064 6.71570 6.92219 7.02038 8.32729 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004368 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.044113 B = 6408.111006 C = 8312.061709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 C -0.157 4.157 4 N -0.436 5.436 5 C 0.001 3.999 6 C -0.209 4.209 7 C -0.142 4.142 8 C 0.005 3.995 9 C -0.169 4.169 10 C 0.082 3.918 11 C -0.489 4.489 12 H 0.079 0.921 13 C 0.033 3.967 14 N -0.818 5.818 15 Si 0.982 3.018 16 H -0.255 1.255 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.245 4.245 20 C -0.021 4.021 21 C -0.168 4.168 22 C -0.106 4.106 23 C -0.188 4.188 24 C -0.076 4.076 25 C -0.143 4.143 26 C -0.008 4.008 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.190 0.810 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 15.717 -6.979 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 C -0.214 4.214 4 N -0.111 5.111 5 C -0.128 4.128 6 C -0.233 4.233 7 C -0.148 4.148 8 C 0.004 3.996 9 C -0.188 4.188 10 C 0.080 3.920 11 C -0.517 4.517 12 H 0.097 0.903 13 C -0.183 4.183 14 N -0.443 5.443 15 Si 0.803 3.197 16 H -0.178 1.178 17 H -0.190 1.190 18 H -0.189 1.189 19 C -0.265 4.265 20 C -0.021 4.021 21 C -0.186 4.186 22 C -0.123 4.123 23 C -0.206 4.206 24 C -0.093 4.093 25 C -0.144 4.144 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.207 0.793 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.719 15.782 -7.106 18.228 hybrid contribution 0.248 -1.527 0.105 1.550 sum -5.471 14.255 -7.002 16.798 Atomic orbital electron populations 1.22156 0.92397 1.02633 1.04331 1.21734 0.96166 0.94538 0.85644 1.22149 1.01380 0.93545 1.04340 1.44344 1.38419 1.21565 1.06771 1.21875 1.05977 1.02692 0.82281 1.20981 1.05302 0.98159 0.98894 1.18304 1.04680 0.98226 0.93615 1.19037 0.93753 0.91812 0.94975 1.21149 1.01118 0.92597 1.03892 1.17734 0.89605 0.93126 0.91584 1.19904 1.37613 0.91147 1.03075 0.90253 1.26799 0.91638 1.05087 0.94750 1.69956 1.33433 1.33270 1.07610 0.85161 0.78962 0.75943 0.79659 1.17818 1.19041 1.18939 1.21020 1.03457 0.94724 1.07298 1.18246 0.95059 0.93436 0.95401 1.21040 0.99911 0.98000 0.99695 1.20904 0.99667 0.92170 0.99593 1.20840 0.99129 0.99249 1.01430 1.21028 0.96965 0.95585 0.95757 1.18933 0.99998 0.93789 1.01635 1.21904 1.01415 0.92954 0.97662 0.91422 0.88386 0.93246 0.87924 0.93008 0.88443 0.91371 0.79283 0.85455 0.87923 0.90210 0.88544 0.87389 0.84493 0.84368 0.85335 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.24 71.98 0.67 -1.33 16 2 C 0.12 1.89 3.54 44.99 0.16 2.05 16 3 C -0.16 -1.88 9.23 71.98 0.66 -1.22 16 4 N -0.44 -10.69 2.61 -501.18 -1.31 -11.99 16 5 C 0.00 0.04 10.30 83.14 0.86 0.89 16 6 C -0.21 -6.95 8.90 22.34 0.20 -6.75 16 7 C -0.14 -5.49 5.11 -20.21 -0.10 -5.59 16 8 C 0.01 0.24 5.89 -18.90 -0.11 0.13 16 9 C -0.17 -8.72 9.29 22.61 0.21 -8.51 16 10 C 0.08 4.67 5.55 -21.42 -0.12 4.55 16 11 C -0.49 -27.23 8.99 23.40 0.21 -27.02 16 12 H 0.08 4.20 7.91 -2.91 -0.02 4.18 16 13 C 0.03 1.71 5.09 85.24 0.43 2.14 16 14 N -0.82 -44.96 11.00 21.82 0.24 -44.72 16 15 Si 0.98 39.31 29.60 68.60 2.03 41.34 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 C -0.24 -14.09 8.39 23.10 0.19 -13.89 16 20 C -0.02 -1.11 5.74 -21.33 -0.12 -1.24 16 21 C -0.17 -7.70 9.78 22.43 0.22 -7.48 16 22 C -0.11 -4.02 9.95 22.03 0.22 -3.80 16 23 C -0.19 -6.89 9.96 22.12 0.22 -6.67 16 24 C -0.08 -3.10 9.21 22.25 0.20 -2.89 16 25 C -0.14 -6.96 5.91 -19.88 -0.12 -7.07 16 26 C -0.01 -0.26 11.26 83.56 0.94 0.68 16 27 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.49 8.06 -2.39 -0.02 1.47 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.78 7.91 -2.39 -0.02 0.76 16 34 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.13 4.26 7.96 -2.91 -0.02 4.24 16 36 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.29 14.23 8.30 -92.70 -0.77 13.46 16 38 H 0.10 5.82 6.15 -2.91 -0.02 5.80 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.13 4.76 5.88 -2.91 -0.02 4.74 16 43 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -68.96 356.85 6.78 -62.18 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 1.00 Total: 36.22 kcal Atomic # 6 Polarization: -87.85 SS G_CDS: 4.82 Total: -83.03 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.07 Total: -56.71 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -68.96 6.78 -62.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239079294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.560 kcal (2) G-P(sol) polarization free energy of solvation -68.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds