Wall clock time and date at job start Tue Mar 31 2020 08:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 C 1.52997 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47114 * 178.58528 * 4 3 2 6 6 C 1.46908 * 110.99924 * 196.31214 * 5 4 3 7 7 C 1.50697 * 109.46941 * 66.04615 * 6 5 4 8 8 H 1.08005 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99986 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99956 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47232 * 119.99700 * 11 9 7 14 14 H 1.48506 * 109.46873 * 239.99519 * 11 9 7 15 15 C 1.46902 * 110.99983 * 72.36429 * 5 4 3 16 16 C 1.50698 * 109.46868 * 200.30240 * 15 5 4 17 17 C 1.39432 * 120.21290 * 262.34018 * 16 15 5 18 18 C 1.46796 * 134.30440 * 0.70320 * 17 16 15 19 19 C 1.33991 * 106.18459 * 179.54021 * 18 17 16 20 20 O 1.34433 * 110.15669 * 359.76146 * 19 18 17 21 21 C 1.34882 * 110.88812 * 0.02562 * 20 19 18 22 22 C 1.38917 * 133.37951 * 180.02562 * 21 20 19 23 23 C 1.37812 * 119.99294 * 179.97438 * 22 21 20 24 24 C 1.37922 * 120.21004 * 82.61550 * 16 15 5 25 25 F 1.35103 * 119.88859 * 359.97438 * 24 16 15 26 26 H 1.08999 * 109.47159 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46868 * 300.00345 * 1 2 3 29 29 H 1.08993 * 109.47029 * 240.00081 * 2 1 3 30 30 H 1.09002 * 109.46526 * 119.99701 * 2 1 3 31 31 H 1.09004 * 109.47588 * 60.00096 * 3 2 1 32 32 H 1.08999 * 109.47224 * 300.00037 * 3 2 1 33 33 H 1.08994 * 109.47346 * 58.58042 * 4 3 2 34 34 H 1.09003 * 109.47305 * 298.58501 * 4 3 2 35 35 H 1.08996 * 109.46952 * 186.04430 * 6 5 4 36 36 H 1.09000 * 109.47262 * 306.04796 * 6 5 4 37 37 H 0.96999 * 119.99960 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.46750 * 320.29537 * 15 5 4 39 39 H 1.08994 * 109.47481 * 80.30423 * 15 5 4 40 40 H 1.08001 * 126.90569 * 359.29747 * 18 17 16 41 41 H 1.08004 * 124.92111 * 179.75760 * 19 18 17 42 42 H 1.07995 * 120.00500 * 359.96722 * 22 21 20 43 43 H 1.07994 * 119.66753 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8271 -0.0348 6 6 5.4760 2.8752 -0.4220 7 6 5.6234 2.4075 -1.8469 8 1 4.7522 2.1043 -2.4087 9 6 6.8706 2.3655 -2.4332 10 7 7.9315 2.7341 -1.7490 11 14 7.0533 1.7864 -4.1997 12 1 5.7184 1.4310 -4.7447 13 1 7.6491 2.8731 -5.0179 14 1 7.9377 0.5941 -4.2408 15 6 3.8440 3.4938 1.2563 16 6 3.8781 4.9878 1.0619 17 6 5.0454 5.7032 1.3259 18 6 6.3922 5.3364 1.7803 19 6 7.0909 6.4782 1.8377 20 8 6.3194 7.5129 1.4615 21 6 5.0778 7.0951 1.1405 22 6 3.9341 7.7506 0.7022 23 6 2.7839 7.0347 0.4493 24 6 2.7531 5.6570 0.6273 25 9 1.6172 4.9707 0.3745 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9069 -0.8778 34 1 3.9337 0.9506 0.9015 35 1 5.8416 3.8984 -0.3357 36 1 6.0546 2.2260 0.2352 37 1 8.8090 2.7042 -2.1613 38 1 2.8738 3.2018 1.6583 39 1 4.6293 3.2000 1.9526 40 1 6.7472 4.3458 2.0237 41 1 8.1242 6.5561 2.1422 42 1 3.9462 8.8210 0.5598 43 1 1.8979 7.5496 0.1084 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248534768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:24 Heat of formation + Delta-G solvation = -25.498597 kcal Electronic energy + Delta-G solvation = -25527.284706 eV Core-core repulsion = 21874.025119 eV Total energy + Delta-G solvation = -3653.259587 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.42179 -42.13389 -37.98840 -36.71792 -34.33727 -32.83315 -32.28214 -30.45812 -29.08106 -28.55523 -26.95905 -24.75326 -22.96077 -22.57964 -22.14309 -20.97298 -20.53574 -19.43253 -17.58482 -17.37060 -16.37748 -16.26266 -15.87131 -15.23252 -15.07326 -14.84912 -14.64131 -14.29314 -13.86997 -13.84074 -13.22716 -13.05028 -12.95492 -12.62689 -12.40700 -12.34254 -12.20884 -11.89516 -11.74545 -11.41868 -11.18439 -10.97082 -10.77462 -10.70703 -10.64367 -10.51873 -10.24782 -10.00433 -9.93367 -9.56567 -9.15104 -8.41812 -8.16277 -7.86050 -7.23957 -6.01537 -4.01223 1.06486 1.48204 2.67024 3.03542 3.30964 3.38602 3.43802 3.76595 4.44243 4.49440 4.70385 4.87105 4.98049 5.09525 5.26890 5.31406 5.34624 5.44074 5.45355 5.50697 5.60520 5.70598 5.84150 5.94460 5.97446 6.05374 6.08242 6.11923 6.18321 6.24353 6.25433 6.36494 6.41032 6.49953 6.52088 6.69558 6.79185 6.89192 6.92205 7.34374 7.35197 7.39426 7.82378 8.12047 8.23394 8.56260 9.06277 9.62258 11.09321 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.006805 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.595290 B = 4113.534585 C = 6465.803739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.063 3.937 5 N -0.529 5.529 6 C 0.191 3.809 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.091 3.909 16 C -0.043 4.043 17 C -0.093 4.093 18 C -0.185 4.185 19 C 0.002 3.998 20 O -0.198 6.198 21 C 0.038 3.962 22 C -0.087 4.087 23 C -0.130 4.130 24 C 0.096 3.904 25 F -0.133 7.133 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.017 0.983 35 H 0.039 0.961 36 H -0.013 1.013 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.158 0.842 41 H 0.207 0.793 42 H 0.136 0.864 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 5.171 8.661 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.065 4.065 5 N -0.253 5.253 6 C 0.066 3.934 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.037 4.037 16 C -0.045 4.045 17 C -0.094 4.094 18 C -0.204 4.204 19 C -0.062 4.062 20 O -0.099 6.099 21 C -0.009 4.009 22 C -0.106 4.106 23 C -0.149 4.149 24 C 0.076 3.924 25 F -0.111 7.111 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.176 0.824 41 H 0.224 0.776 42 H 0.154 0.846 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.412 5.672 8.258 13.082 hybrid contribution 0.734 -1.042 -0.505 1.371 sum -7.678 4.630 7.753 11.853 Atomic orbital electron populations 1.21753 0.96382 1.00855 1.01634 1.21497 0.95274 0.97678 1.01722 1.21631 0.96128 0.95352 1.02051 1.22024 0.93638 0.90021 1.00819 1.62121 1.23475 1.15023 1.24678 1.19826 0.80585 0.97401 0.95554 1.21206 0.92847 1.42831 0.97390 0.91892 1.24948 0.95872 0.95723 0.97945 1.69958 0.98482 1.48545 1.36719 0.86508 0.78118 0.78256 0.84969 1.19657 1.21071 1.21155 1.20892 1.00831 0.88975 0.93014 1.19253 0.90552 0.96380 0.98331 1.19551 0.94295 0.92618 1.02969 1.22496 0.91883 0.99793 1.06228 1.23872 0.96608 0.84559 1.01150 1.83976 1.19540 1.36010 1.70416 1.19548 0.85623 0.92789 1.02942 1.19539 0.88594 0.99968 1.02516 1.20756 0.98756 0.92201 1.03190 1.17108 0.82923 0.89393 1.03012 1.91474 1.47945 1.79798 1.91914 0.92810 0.93337 0.93093 0.91997 0.92598 0.92907 0.91377 0.89469 0.96470 0.94256 0.99492 0.93136 0.90690 0.94300 0.82417 0.77626 0.84619 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.11 -1.85 5.26 -26.73 -0.14 -1.99 16 4 C 0.06 1.23 4.80 -3.82 -0.02 1.21 16 5 N -0.53 -11.52 4.37 -237.51 -1.04 -12.55 16 6 C 0.19 4.93 4.54 -4.97 -0.02 4.91 16 7 C -0.50 -14.20 8.28 -34.44 -0.29 -14.48 16 8 H 0.06 1.78 7.26 -52.48 -0.38 1.40 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.09 1.71 4.69 -4.98 -0.02 1.69 16 16 C -0.04 -0.81 5.02 -104.29 -0.52 -1.33 16 17 C -0.09 -1.70 5.30 -105.16 -0.56 -2.26 16 18 C -0.19 -3.17 9.84 -37.62 -0.37 -3.54 16 19 C 0.00 0.04 11.96 29.24 0.35 0.39 16 20 O -0.20 -3.17 10.58 3.74 0.04 -3.13 16 21 C 0.04 0.64 7.41 -38.50 -0.29 0.36 16 22 C -0.09 -1.25 10.06 -39.49 -0.40 -1.64 16 23 C -0.13 -1.87 9.99 -39.47 -0.39 -2.26 16 24 C 0.10 1.64 7.24 -39.43 -0.29 1.36 16 25 F -0.13 -2.30 16.60 2.25 0.04 -2.26 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.83 6.60 -51.93 -0.34 0.49 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.88 6.58 -51.93 -0.34 1.54 16 34 H 0.02 0.32 8.05 -51.93 -0.42 -0.09 16 35 H 0.04 1.08 5.79 -51.93 -0.30 0.78 16 36 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.07 1.29 6.01 -51.93 -0.31 0.98 16 39 H 0.04 0.73 7.58 -51.93 -0.39 0.33 16 40 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16 41 H 0.21 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -31.25 356.77 -8.98 -40.23 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.27 Total: 0.46 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -2.84 Total: -19.33 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.30 Total: -38.18 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.25 -8.98 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248534768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.735 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds