Wall clock time and date at job start Tue Mar 31 2020 08:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47007 * 2 1 4 4 C 1.52997 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47114 * 178.58528 * 4 3 2 6 6 C 1.46908 * 110.99924 * 196.31214 * 5 4 3 7 7 C 1.50697 * 109.46941 * 66.04615 * 6 5 4 8 8 H 1.08005 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99986 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99851 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99956 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47232 * 119.99700 * 11 9 7 14 14 H 1.48506 * 109.46873 * 239.99519 * 11 9 7 15 15 C 1.46902 * 110.99983 * 72.36429 * 5 4 3 16 16 C 1.50698 * 109.46868 * 200.30240 * 15 5 4 17 17 C 1.39432 * 120.21290 * 262.34018 * 16 15 5 18 18 C 1.46796 * 134.30440 * 0.70320 * 17 16 15 19 19 C 1.33991 * 106.18459 * 179.54021 * 18 17 16 20 20 O 1.34433 * 110.15669 * 359.76146 * 19 18 17 21 21 C 1.34882 * 110.88812 * 0.02562 * 20 19 18 22 22 C 1.38917 * 133.37951 * 180.02562 * 21 20 19 23 23 C 1.37812 * 119.99294 * 179.97438 * 22 21 20 24 24 C 1.37922 * 120.21004 * 82.61550 * 16 15 5 25 25 F 1.35103 * 119.88859 * 359.97438 * 24 16 15 26 26 H 1.08999 * 109.47159 * 59.99923 * 1 2 3 27 27 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46868 * 300.00345 * 1 2 3 29 29 H 1.08993 * 109.47029 * 240.00081 * 2 1 3 30 30 H 1.09002 * 109.46526 * 119.99701 * 2 1 3 31 31 H 1.09004 * 109.47588 * 60.00096 * 3 2 1 32 32 H 1.08999 * 109.47224 * 300.00037 * 3 2 1 33 33 H 1.08994 * 109.47346 * 58.58042 * 4 3 2 34 34 H 1.09003 * 109.47305 * 298.58501 * 4 3 2 35 35 H 1.08996 * 109.46952 * 186.04430 * 6 5 4 36 36 H 1.09000 * 109.47262 * 306.04796 * 6 5 4 37 37 H 0.96999 * 119.99960 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.46750 * 320.29537 * 15 5 4 39 39 H 1.08994 * 109.47481 * 80.30423 * 15 5 4 40 40 H 1.08001 * 126.90569 * 359.29747 * 18 17 16 41 41 H 1.08004 * 124.92111 * 179.75760 * 19 18 17 42 42 H 1.07995 * 120.00500 * 359.96722 * 22 21 20 43 43 H 1.07994 * 119.66753 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8271 -0.0348 6 6 5.4760 2.8752 -0.4220 7 6 5.6234 2.4075 -1.8469 8 1 4.7522 2.1043 -2.4087 9 6 6.8706 2.3655 -2.4332 10 7 7.9315 2.7341 -1.7490 11 14 7.0533 1.7864 -4.1997 12 1 5.7184 1.4310 -4.7447 13 1 7.6491 2.8731 -5.0179 14 1 7.9377 0.5941 -4.2408 15 6 3.8440 3.4938 1.2563 16 6 3.8781 4.9878 1.0619 17 6 5.0454 5.7032 1.3259 18 6 6.3922 5.3364 1.7803 19 6 7.0909 6.4782 1.8377 20 8 6.3194 7.5129 1.4615 21 6 5.0778 7.0951 1.1405 22 6 3.9341 7.7506 0.7022 23 6 2.7839 7.0347 0.4493 24 6 2.7531 5.6570 0.6273 25 9 1.6172 4.9707 0.3745 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9069 -0.8778 34 1 3.9337 0.9506 0.9015 35 1 5.8416 3.8984 -0.3357 36 1 6.0546 2.2260 0.2352 37 1 8.8090 2.7042 -2.1613 38 1 2.8738 3.2018 1.6583 39 1 4.6293 3.2000 1.9526 40 1 6.7472 4.3458 2.0237 41 1 8.1242 6.5561 2.1422 42 1 3.9462 8.8210 0.5598 43 1 1.8979 7.5496 0.1084 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248534768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:23 Heat of formation + Delta-G solvation = -42.720061 kcal Electronic energy + Delta-G solvation = -25528.031485 eV Core-core repulsion = 21874.025119 eV Total energy + Delta-G solvation = -3654.006366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.75809 -43.37618 -39.45993 -38.13181 -35.68323 -34.71393 -33.74625 -31.83777 -30.31579 -30.13883 -28.63565 -26.33323 -24.62334 -23.90643 -23.40261 -22.44046 -21.84060 -20.97493 -18.86322 -18.75858 -18.35033 -17.58693 -17.18046 -16.74674 -16.44280 -16.41101 -16.06446 -15.84174 -15.44744 -15.30355 -14.40978 -14.37164 -14.29852 -14.00440 -13.90016 -13.79646 -13.59158 -13.50253 -13.23384 -12.94759 -12.70451 -12.60024 -12.52601 -12.16297 -12.12762 -11.87870 -11.84048 -11.48955 -11.36017 -11.19778 -11.05114 -10.59364 -9.41419 -9.16935 -9.01817 -8.20015 -6.28190 -0.16299 0.19667 1.36764 1.37883 1.42985 1.50899 1.84489 2.37801 2.48797 3.12106 3.21733 3.34291 3.54287 3.71559 3.79946 4.04191 4.11772 4.19542 4.26883 4.30701 4.33731 4.44335 4.47233 4.56567 4.72183 4.79510 4.80233 4.87743 4.98971 5.00965 5.05049 5.12904 5.15763 5.18214 5.24122 5.31245 5.35403 5.41895 5.47956 5.53492 5.65230 5.66907 6.07091 6.14296 6.36656 6.60697 6.86906 7.39918 8.90693 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.006805 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.595290 B = 4113.534585 C = 6465.803739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.100 4.100 4 C 0.063 3.937 5 N -0.536 5.536 6 C 0.214 3.786 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.007 3.993 10 N -0.927 5.927 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.276 1.276 15 C 0.098 3.902 16 C -0.078 4.078 17 C -0.117 4.117 18 C -0.227 4.227 19 C 0.026 3.974 20 O -0.196 6.196 21 C 0.019 3.981 22 C -0.073 4.073 23 C -0.125 4.125 24 C 0.085 3.915 25 F -0.137 7.137 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.020 0.980 35 H 0.019 0.981 36 H -0.044 1.044 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.144 0.856 41 H 0.250 0.750 42 H 0.177 0.823 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 6.348 8.113 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.138 4.138 4 C -0.064 4.064 5 N -0.260 5.260 6 C 0.088 3.912 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.567 5.567 11 Si 0.786 3.214 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.202 1.202 15 C -0.030 4.030 16 C -0.080 4.080 17 C -0.119 4.119 18 C -0.246 4.246 19 C -0.038 4.038 20 O -0.098 6.098 21 C -0.028 4.028 22 C -0.091 4.091 23 C -0.143 4.143 24 C 0.065 3.935 25 F -0.115 7.115 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.037 0.963 36 H -0.027 1.027 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.162 0.838 41 H 0.266 0.734 42 H 0.194 0.806 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.590 6.847 7.721 14.088 hybrid contribution 1.116 -1.369 -0.274 1.787 sum -8.473 5.478 7.448 12.541 Atomic orbital electron populations 1.21715 0.94408 1.02139 1.01918 1.21478 0.96938 0.95547 1.01911 1.21507 0.93232 0.97354 1.01689 1.22050 0.95997 0.88718 0.99664 1.62081 1.20674 1.16408 1.26823 1.19386 0.82614 0.95116 0.94106 1.21470 0.92929 1.43234 0.98476 0.92586 1.25791 0.95476 0.95665 1.02250 1.70074 0.98963 1.49154 1.38513 0.85464 0.78282 0.78012 0.79674 1.19115 1.20462 1.20197 1.20847 1.01100 0.89720 0.91331 1.19308 0.91753 0.95982 1.00928 1.19833 0.94583 0.93891 1.03557 1.22562 0.92634 1.00345 1.09046 1.24613 0.97617 0.83341 0.98279 1.83989 1.19419 1.36183 1.70207 1.19984 0.86618 0.92418 1.03825 1.20070 0.87206 1.01855 0.99984 1.21174 1.00198 0.90889 1.02033 1.17425 0.82341 0.90708 1.02982 1.91456 1.47981 1.80160 1.91950 0.92965 0.91579 0.92391 0.92515 0.91783 0.92110 0.92716 0.92012 0.96221 0.96313 1.02654 0.92813 0.89186 0.95209 0.83781 0.73394 0.80587 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.12 -3.20 5.93 30.60 0.18 -3.02 16 3 C -0.10 -3.26 5.26 30.59 0.16 -3.10 16 4 C 0.06 2.58 4.80 86.30 0.41 2.99 16 5 N -0.54 -24.40 4.37 -905.35 -3.95 -28.36 16 6 C 0.21 11.65 4.54 85.55 0.39 12.04 16 7 C -0.52 -30.47 8.28 25.60 0.21 -30.26 16 8 H 0.06 3.27 7.26 -2.91 -0.02 3.25 16 9 C 0.01 0.38 5.46 84.66 0.46 0.84 16 10 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 11 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 15 C 0.10 3.85 4.69 85.56 0.40 4.25 16 16 C -0.08 -2.98 5.02 -19.65 -0.10 -3.08 16 17 C -0.12 -4.42 5.30 -20.21 -0.11 -4.52 16 18 C -0.23 -8.14 9.84 23.54 0.23 -7.91 16 19 C 0.03 0.74 11.96 66.85 0.80 1.54 16 20 O -0.20 -6.05 10.58 -9.52 -0.10 -6.15 16 21 C 0.02 0.61 7.41 22.97 0.17 0.78 16 22 C -0.07 -1.89 10.06 22.33 0.22 -1.66 16 23 C -0.12 -3.27 9.99 22.34 0.22 -3.05 16 24 C 0.09 2.89 7.24 22.37 0.16 3.05 16 25 F -0.14 -4.65 16.60 44.97 0.75 -3.90 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.88 6.60 -2.38 -0.02 1.86 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 2.80 6.58 -2.39 -0.02 2.78 16 34 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 35 H 0.02 1.10 5.79 -2.39 -0.01 1.08 16 36 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.09 3.18 6.01 -2.38 -0.01 3.16 16 39 H 0.03 1.20 7.58 -2.39 -0.02 1.19 16 40 H 0.14 5.39 8.06 -2.91 -0.02 5.37 16 41 H 0.25 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 43 H 0.18 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.91 356.77 4.55 -65.36 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.00 Total: 14.70 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.54 Total: -33.49 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -3.67 Total: -83.78 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.10 Total: -6.15 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.75 Total: -3.90 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.91 4.55 -65.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248534768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.644 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds