Wall clock time and date at job start Tue Mar 31 2020 08:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 H 1.08992 * 109.47781 * 305.35137 * 3 2 1 5 5 C 1.50701 * 109.46901 * 185.34947 * 3 2 1 6 6 H 1.08001 * 120.00009 * 274.69859 * 5 3 2 7 7 C 1.37877 * 120.00068 * 94.70472 * 5 3 2 8 8 N 1.31510 * 120.00109 * 184.81154 * 7 5 3 9 9 Si 1.86803 * 119.99826 * 4.80972 * 7 5 3 10 10 H 1.48499 * 109.46989 * 84.88336 * 9 7 5 11 11 H 1.48497 * 109.46986 * 204.88382 * 9 7 5 12 12 H 1.48501 * 109.47292 * 324.88409 * 9 7 5 13 13 N 1.46906 * 109.46752 * 65.35178 * 3 2 1 14 14 C 1.47447 * 110.99711 * 69.87191 * 13 3 2 15 15 C 1.54321 * 107.23186 * 123.25504 * 14 13 3 16 16 C 1.55146 * 103.02001 * 22.28462 * 15 14 13 17 17 C 1.47845 * 110.99867 * 190.71142 * 13 3 2 18 18 H 1.09002 * 110.37351 * 332.46810 * 17 13 3 19 19 C 1.50699 * 110.37221 * 94.80636 * 17 13 3 20 20 C 1.38110 * 120.03670 * 24.72443 * 19 17 13 21 21 C 1.38284 * 120.07608 * 179.74261 * 20 19 17 22 22 C 1.38328 * 120.16078 * 0.55871 * 21 20 19 23 23 C 1.38058 * 120.07823 * 359.69534 * 22 21 20 24 24 C 1.38948 * 120.04339 * 205.00031 * 19 17 13 25 25 S 1.76205 * 120.07836 * 359.95306 * 24 19 17 26 26 C 1.81398 * 102.99849 * 180.02562 * 25 24 19 27 27 H 1.08993 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46931 * 299.99849 * 1 2 3 29 29 H 1.09004 * 109.46952 * 59.99047 * 1 2 3 30 30 H 1.09006 * 109.46652 * 240.00626 * 2 1 3 31 31 H 1.08994 * 109.47282 * 120.00509 * 2 1 3 32 32 H 0.97008 * 120.00024 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.88874 * 242.66128 * 14 13 3 34 34 H 1.09002 * 109.89090 * 3.68764 * 14 13 3 35 35 H 1.09002 * 110.70232 * 140.66161 * 15 14 13 36 36 H 1.08998 * 110.71068 * 263.89818 * 15 14 13 37 37 H 1.08995 * 110.99211 * 82.43309 * 16 15 14 38 38 H 1.08994 * 110.99142 * 206.21849 * 16 15 14 39 39 H 1.07998 * 119.96357 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.91909 * 180.25356 * 21 20 19 41 41 H 1.07995 * 119.95475 * 179.72422 * 22 21 20 42 42 H 1.08007 * 120.03714 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47036 * 60.00433 * 26 25 24 44 44 H 1.09001 * 109.47194 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47716 * 300.00267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9833 -0.8381 5 6 3.5412 1.4445 -0.1325 6 1 4.1610 1.3397 0.7458 7 6 4.1235 1.5803 -1.3749 8 7 5.4290 1.4873 -1.5029 9 14 3.0579 1.8962 -2.8762 10 1 2.7915 3.3522 -2.9966 11 1 3.7633 1.4198 -4.0930 12 1 1.7717 1.1679 -2.7326 13 7 1.6586 2.0966 1.2589 14 6 2.4181 1.5412 2.3941 15 6 3.1478 2.7179 3.0755 16 6 2.3118 3.9489 2.6365 17 6 1.9052 3.5530 1.1951 18 1 2.7153 3.7706 0.4990 19 6 0.6504 4.2801 0.7854 20 6 -0.5860 3.7104 1.0183 21 6 -1.7381 4.3792 0.6476 22 6 -1.6566 5.6153 0.0321 23 6 -0.4240 6.1885 -0.2086 24 6 0.7361 5.5218 0.1678 25 16 2.3115 6.2498 -0.1368 26 6 1.8869 7.8211 -0.9376 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8387 1.5825 -2.3771 33 1 1.7359 1.0687 3.1008 34 1 3.1427 0.8110 2.0338 35 1 3.1297 2.6067 4.1597 36 1 4.1723 2.7984 2.7123 37 1 1.4336 4.0707 3.2703 38 1 2.9195 4.8538 2.6367 39 1 -0.6533 2.7435 1.4947 40 1 -2.7038 3.9332 0.8347 41 1 -2.5584 6.1327 -0.2601 42 1 -0.3611 7.1539 -0.6889 43 1 1.2729 8.4182 -0.2634 44 1 2.8004 8.3659 -1.1760 45 1 1.3324 7.6233 -1.8549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:01 Heat of formation + Delta-G solvation = 25.077059 kcal Electronic energy + Delta-G solvation = -24318.114319 eV Core-core repulsion = 21233.261033 eV Total energy + Delta-G solvation = -3084.853286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.46343 -37.82397 -34.17785 -31.99000 -31.54005 -30.99121 -29.63068 -28.70222 -27.18392 -26.60558 -22.89890 -22.52828 -22.25521 -20.98144 -19.78042 -18.61488 -17.41286 -16.96061 -15.88626 -15.56354 -14.89819 -14.39377 -14.15752 -13.93388 -13.86275 -13.73923 -13.35348 -13.04506 -12.92072 -12.66403 -12.41447 -12.28567 -12.17120 -11.88200 -11.60760 -11.39767 -11.00611 -10.92440 -10.81798 -10.62489 -10.50648 -10.32905 -10.13955 -9.89018 -9.88069 -9.71875 -9.57082 -9.38134 -9.16080 -8.52398 -8.39489 -7.18591 -7.08261 -6.09381 -4.09935 1.52159 1.69356 1.78067 2.67811 3.31858 3.38606 3.43036 4.00834 4.42798 4.81916 5.07732 5.08847 5.10660 5.21066 5.26853 5.32526 5.41418 5.53716 5.65224 5.70654 5.79400 5.84573 6.06286 6.09945 6.13387 6.14296 6.24338 6.31534 6.34248 6.42979 6.47893 6.57155 6.65306 6.72577 6.77295 6.80594 6.82318 6.92810 7.04464 7.08535 7.23996 7.27405 7.30949 7.63412 8.01977 8.23805 8.49705 8.95636 9.56023 11.02980 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.007259 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.680559 B = 3856.291554 C = 4381.738068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.174 3.826 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.081 0.919 7 C 0.083 3.917 8 N -0.895 5.895 9 Si 0.862 3.138 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.515 5.515 14 C 0.047 3.953 15 C -0.135 4.135 16 C -0.112 4.112 17 C 0.109 3.891 18 H 0.088 0.912 19 C -0.036 4.036 20 C -0.074 4.074 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.141 4.141 24 C -0.087 4.087 25 S -0.097 6.097 26 C -0.155 4.155 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 8.772 4.840 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.067 3.933 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.099 0.901 7 C -0.121 4.121 8 N -0.532 5.532 9 Si 0.689 3.311 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.238 5.238 14 C -0.081 4.081 15 C -0.173 4.173 16 C -0.151 4.151 17 C 0.000 4.000 18 H 0.106 0.894 19 C -0.042 4.042 20 C -0.094 4.094 21 C -0.155 4.155 22 C -0.135 4.135 23 C -0.165 4.165 24 C -0.200 4.200 25 S 0.146 5.854 26 C -0.324 4.324 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.205 8.364 4.960 14.096 hybrid contribution -0.877 0.835 -1.593 2.001 sum -11.083 9.199 3.367 14.791 Atomic orbital electron populations 1.21767 0.98000 0.99099 1.01211 1.21681 0.93257 0.98858 1.00635 1.19845 0.94567 0.90949 0.87976 0.94369 1.21627 0.90447 1.51047 0.94998 0.90081 1.24968 0.94565 0.94016 0.98526 1.69911 1.09595 1.49557 1.24156 0.87081 0.81374 0.79687 0.82994 1.19584 1.21667 1.18770 1.63677 1.53916 1.01141 1.05110 1.22659 0.95837 0.97100 0.92476 1.22726 0.99942 0.95379 0.99279 1.22604 0.99208 0.98007 0.95241 1.21326 0.92833 0.89093 0.96773 0.89402 1.19665 0.96211 0.91775 0.96545 1.21143 0.90659 0.99782 0.97818 1.21183 0.98472 0.95402 1.00407 1.20890 0.96555 0.96127 0.99923 1.20981 0.92056 1.00096 1.03387 1.21651 0.96169 0.98610 1.03598 1.85994 1.07030 1.18421 1.74005 1.23702 1.06274 0.98852 1.03568 0.94961 0.92338 0.94284 0.93073 0.93008 0.92730 0.92842 0.90599 0.92251 0.91169 0.91781 0.91425 0.84191 0.86432 0.86598 0.86557 0.90213 0.87787 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.80 37.16 0.36 -2.21 16 2 C -0.11 -2.22 5.35 -26.73 -0.14 -2.37 16 3 C 0.17 3.97 1.27 -68.86 -0.09 3.89 16 4 H 0.04 0.95 5.24 -51.93 -0.27 0.68 16 5 C -0.54 -14.41 7.16 -34.44 -0.25 -14.66 16 6 H 0.08 2.32 6.21 -52.49 -0.33 1.99 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 8 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 9 Si 0.86 21.73 26.99 -169.99 -4.59 17.14 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.44 6.83 56.52 0.39 -6.05 16 13 N -0.52 -10.21 3.04 -218.21 -0.66 -10.87 16 14 C 0.05 0.88 5.41 -2.83 -0.02 0.87 16 15 C -0.13 -2.31 6.94 -24.90 -0.17 -2.49 16 16 C -0.11 -1.91 6.48 -24.59 -0.16 -2.07 16 17 C 0.11 2.12 1.89 -67.34 -0.13 1.99 16 18 H 0.09 2.04 5.92 -51.93 -0.31 1.73 16 19 C -0.04 -0.65 5.10 -104.41 -0.53 -1.18 16 20 C -0.07 -1.21 9.34 -39.61 -0.37 -1.58 16 21 C -0.13 -1.88 10.04 -39.53 -0.40 -2.28 16 22 C -0.12 -1.55 10.04 -39.61 -0.40 -1.94 16 23 C -0.14 -2.06 9.36 -39.37 -0.37 -2.43 16 24 C -0.09 -1.49 6.11 -39.04 -0.24 -1.73 16 25 S -0.10 -1.62 20.85 -107.50 -2.24 -3.86 16 26 C -0.16 -1.80 9.15 101.05 0.92 -0.88 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.00 7.49 -51.93 -0.39 0.61 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.06 7.04 -51.93 -0.37 0.69 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.60 5.14 -51.93 -0.27 1.34 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.14 2.28 7.02 -52.49 -0.37 1.91 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.43 5.88 -52.48 -0.31 1.12 16 43 H 0.08 0.79 7.75 -51.92 -0.40 0.39 16 44 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 45 H 0.08 0.89 7.75 -51.92 -0.40 0.49 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -29.21 357.88 -10.60 -39.81 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.21 Total: 5.24 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -2.07 Total: -26.83 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.11 Total: -36.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.24 Total: -3.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.21 -10.60 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.882 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds