Wall clock time and date at job start Tue Mar 31 2020 08:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 H 1.08992 * 109.47781 * 305.35137 * 3 2 1 5 5 C 1.50701 * 109.46901 * 185.34947 * 3 2 1 6 6 H 1.08001 * 120.00009 * 274.69859 * 5 3 2 7 7 C 1.37877 * 120.00068 * 94.70472 * 5 3 2 8 8 N 1.31510 * 120.00109 * 184.81154 * 7 5 3 9 9 Si 1.86803 * 119.99826 * 4.80972 * 7 5 3 10 10 H 1.48499 * 109.46989 * 84.88336 * 9 7 5 11 11 H 1.48497 * 109.46986 * 204.88382 * 9 7 5 12 12 H 1.48501 * 109.47292 * 324.88409 * 9 7 5 13 13 N 1.46906 * 109.46752 * 65.35178 * 3 2 1 14 14 C 1.47447 * 110.99711 * 69.87191 * 13 3 2 15 15 C 1.54321 * 107.23186 * 123.25504 * 14 13 3 16 16 C 1.55146 * 103.02001 * 22.28462 * 15 14 13 17 17 C 1.47845 * 110.99867 * 190.71142 * 13 3 2 18 18 H 1.09002 * 110.37351 * 332.46810 * 17 13 3 19 19 C 1.50699 * 110.37221 * 94.80636 * 17 13 3 20 20 C 1.38110 * 120.03670 * 24.72443 * 19 17 13 21 21 C 1.38284 * 120.07608 * 179.74261 * 20 19 17 22 22 C 1.38328 * 120.16078 * 0.55871 * 21 20 19 23 23 C 1.38058 * 120.07823 * 359.69534 * 22 21 20 24 24 C 1.38948 * 120.04339 * 205.00031 * 19 17 13 25 25 S 1.76205 * 120.07836 * 359.95306 * 24 19 17 26 26 C 1.81398 * 102.99849 * 180.02562 * 25 24 19 27 27 H 1.08993 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46931 * 299.99849 * 1 2 3 29 29 H 1.09004 * 109.46952 * 59.99047 * 1 2 3 30 30 H 1.09006 * 109.46652 * 240.00626 * 2 1 3 31 31 H 1.08994 * 109.47282 * 120.00509 * 2 1 3 32 32 H 0.97008 * 120.00024 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.88874 * 242.66128 * 14 13 3 34 34 H 1.09002 * 109.89090 * 3.68764 * 14 13 3 35 35 H 1.09002 * 110.70232 * 140.66161 * 15 14 13 36 36 H 1.08998 * 110.71068 * 263.89818 * 15 14 13 37 37 H 1.08995 * 110.99211 * 82.43309 * 16 15 14 38 38 H 1.08994 * 110.99142 * 206.21849 * 16 15 14 39 39 H 1.07998 * 119.96357 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.91909 * 180.25356 * 21 20 19 41 41 H 1.07995 * 119.95475 * 179.72422 * 22 21 20 42 42 H 1.08007 * 120.03714 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47036 * 60.00433 * 26 25 24 44 44 H 1.09001 * 109.47194 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.47716 * 300.00267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9833 -0.8381 5 6 3.5412 1.4445 -0.1325 6 1 4.1610 1.3397 0.7458 7 6 4.1235 1.5803 -1.3749 8 7 5.4290 1.4873 -1.5029 9 14 3.0579 1.8962 -2.8762 10 1 2.7915 3.3522 -2.9966 11 1 3.7633 1.4198 -4.0930 12 1 1.7717 1.1679 -2.7326 13 7 1.6586 2.0966 1.2589 14 6 2.4181 1.5412 2.3941 15 6 3.1478 2.7179 3.0755 16 6 2.3118 3.9489 2.6365 17 6 1.9052 3.5530 1.1951 18 1 2.7153 3.7706 0.4990 19 6 0.6504 4.2801 0.7854 20 6 -0.5860 3.7104 1.0183 21 6 -1.7381 4.3792 0.6476 22 6 -1.6566 5.6153 0.0321 23 6 -0.4240 6.1885 -0.2086 24 6 0.7361 5.5218 0.1678 25 16 2.3115 6.2498 -0.1368 26 6 1.8869 7.8211 -0.9376 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8387 1.5825 -2.3771 33 1 1.7359 1.0687 3.1008 34 1 3.1427 0.8110 2.0338 35 1 3.1297 2.6067 4.1597 36 1 4.1723 2.7984 2.7123 37 1 1.4336 4.0707 3.2703 38 1 2.9195 4.8538 2.6367 39 1 -0.6533 2.7435 1.4947 40 1 -2.7038 3.9332 0.8347 41 1 -2.5584 6.1327 -0.2601 42 1 -0.3611 7.1539 -0.6889 43 1 1.2729 8.4182 -0.2634 44 1 2.8004 8.3659 -1.1760 45 1 1.3324 7.6233 -1.8549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:01 Heat of formation + Delta-G solvation = 10.286802 kcal Electronic energy + Delta-G solvation = -24318.755672 eV Core-core repulsion = 21233.261033 eV Total energy + Delta-G solvation = -3085.494639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85814 -39.18399 -35.88821 -34.05743 -32.80268 -32.10489 -31.18939 -29.67173 -28.57510 -28.48498 -24.65287 -23.76458 -23.52551 -22.51934 -21.20202 -20.34362 -19.13237 -18.42476 -17.41571 -16.93241 -16.40497 -15.97844 -15.58047 -15.26210 -15.01674 -14.85710 -14.74379 -14.68469 -14.52908 -14.14754 -13.88574 -13.67424 -13.49412 -13.29810 -13.12057 -12.80383 -12.75136 -12.60837 -12.25961 -12.09059 -12.02840 -11.79135 -11.70798 -11.59033 -11.50533 -11.39214 -11.12360 -10.90985 -10.67646 -10.55192 -9.58795 -8.89358 -8.33520 -8.30295 -6.30969 0.36954 0.54511 0.65681 1.25849 1.29911 1.36617 1.59047 2.30324 2.85417 3.05255 3.36138 3.82924 3.98069 4.07967 4.16720 4.22551 4.24817 4.26495 4.33989 4.43373 4.56458 4.60103 4.62198 4.70016 4.76374 4.80332 4.82403 4.92807 4.93860 5.00462 5.06741 5.16780 5.19753 5.28296 5.28741 5.38390 5.45360 5.46804 5.52689 5.60936 5.66822 5.69194 5.78191 6.13494 6.19460 6.45555 6.51673 6.79717 7.37186 8.85730 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.007259 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.680559 B = 3856.291554 C = 4381.738068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C 0.182 3.818 4 H 0.022 0.978 5 C -0.527 4.527 6 H 0.050 0.950 7 C 0.029 3.971 8 N -0.942 5.942 9 Si 0.915 3.085 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.501 5.501 14 C 0.046 3.954 15 C -0.130 4.130 16 C -0.102 4.102 17 C 0.111 3.889 18 H 0.042 0.958 19 C -0.063 4.063 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.144 4.144 24 C -0.098 4.098 25 S -0.180 6.180 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 9.915 5.231 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C 0.074 3.926 4 H 0.040 0.960 5 C -0.566 4.566 6 H 0.068 0.932 7 C -0.170 4.170 8 N -0.583 5.583 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.224 5.224 14 C -0.082 4.082 15 C -0.168 4.168 16 C -0.140 4.140 17 C 0.002 3.998 18 H 0.060 0.940 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.167 4.167 24 C -0.211 4.211 25 S 0.062 5.938 26 C -0.302 4.302 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.157 0.843 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.277 9.501 5.365 17.969 hybrid contribution 0.377 0.551 -1.634 1.765 sum -13.901 10.052 3.731 17.555 Atomic orbital electron populations 1.21647 0.94868 1.00858 1.01537 1.21589 0.96003 0.96925 0.99885 1.19677 0.91572 0.92307 0.89043 0.96048 1.21909 0.92612 1.48506 0.93583 0.93229 1.25641 0.95409 0.94614 1.01318 1.70039 1.11276 1.52342 1.24631 0.86220 0.80478 0.79223 0.80041 1.20054 1.21486 1.17234 1.63751 1.53220 1.01529 1.03857 1.22713 0.95832 0.96998 0.92671 1.22675 0.98050 0.95024 1.01075 1.22547 0.99675 0.97583 0.94240 1.21204 0.92857 0.88715 0.97025 0.94007 1.19598 0.95948 0.92672 0.98672 1.21207 0.90824 1.00001 0.98495 1.21537 0.98878 0.95415 0.99109 1.21348 0.97340 0.95802 0.98283 1.21344 0.91657 1.00905 1.02812 1.21712 0.96290 0.98721 1.04368 1.86257 1.09545 1.22565 1.75420 1.23738 1.07458 0.95484 1.03536 0.92482 0.91194 0.94720 0.94902 0.92803 0.92919 0.89935 0.93715 0.88906 0.94234 0.89819 0.91640 0.84401 0.83322 0.82902 0.84260 0.88073 0.86342 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.80 71.98 0.71 -3.70 16 2 C -0.11 -4.39 5.35 30.60 0.16 -4.23 16 3 C 0.18 8.47 1.27 44.17 0.06 8.52 16 4 H 0.02 1.08 5.24 -2.39 -0.01 1.07 16 5 C -0.53 -29.42 7.16 25.60 0.18 -29.24 16 6 H 0.05 3.04 6.21 -2.91 -0.02 3.02 16 7 C 0.03 1.68 5.47 84.66 0.46 2.14 16 8 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.91 46.35 26.99 68.60 1.85 48.20 16 10 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.25 -11.87 6.83 99.48 0.68 -11.19 16 13 N -0.50 -19.90 3.04 -844.28 -2.56 -22.47 16 14 C 0.05 1.72 5.41 86.65 0.47 2.18 16 15 C -0.13 -4.51 6.94 31.78 0.22 -4.29 16 16 C -0.10 -3.49 6.48 31.98 0.21 -3.28 16 17 C 0.11 4.41 1.89 44.64 0.08 4.50 16 18 H 0.04 2.07 5.92 -2.39 -0.01 2.05 16 19 C -0.06 -2.23 5.10 -19.72 -0.10 -2.33 16 20 C -0.09 -2.60 9.34 22.25 0.21 -2.39 16 21 C -0.13 -3.10 10.04 22.30 0.22 -2.88 16 22 C -0.11 -2.42 10.04 22.25 0.22 -2.20 16 23 C -0.14 -3.75 9.36 22.41 0.21 -3.54 16 24 C -0.10 -3.25 6.11 22.62 0.14 -3.11 16 25 S -0.18 -6.09 20.85 -56.49 -1.18 -7.27 16 26 C -0.13 -2.86 9.15 113.37 1.04 -1.82 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.17 7.49 -2.39 -0.02 2.16 16 29 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.05 2.19 7.04 -2.39 -0.02 2.17 16 32 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.04 1.96 5.14 -2.39 -0.01 1.95 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 2.52 8.05 -2.39 -0.02 2.50 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.14 4.15 7.02 -2.91 -0.02 4.13 16 40 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.14 2.89 5.88 -2.91 -0.02 2.87 16 43 H 0.10 1.72 7.75 -2.39 -0.02 1.70 16 44 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 Total: -1.00 -67.85 357.88 3.84 -64.01 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.93 Total: 22.28 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 4.49 Total: -45.65 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -2.26 Total: -81.58 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.85 Total: 48.20 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -1.18 Total: -7.27 kcal Total: -67.85 3.84 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.298 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds