Wall clock time and date at job start Tue Mar 31 2020 08:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 H 1.08999 * 109.46854 * 55.00363 * 3 2 1 5 5 C 1.50701 * 109.46991 * 175.00114 * 3 2 1 6 6 H 1.08000 * 119.99885 * 120.00250 * 5 3 2 7 7 C 1.37875 * 119.99994 * 300.00231 * 5 3 2 8 8 N 1.31512 * 120.00083 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 120.00015 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46960 * 90.00136 * 9 7 5 11 11 H 1.48503 * 109.46964 * 210.00207 * 9 7 5 12 12 H 1.48497 * 109.46923 * 330.00176 * 9 7 5 13 13 N 1.46904 * 109.47141 * 295.00036 * 3 2 1 14 14 C 1.47439 * 111.00045 * 295.12687 * 13 3 2 15 15 C 1.54322 * 107.36952 * 236.65966 * 14 13 3 16 16 C 1.55398 * 102.90031 * 337.89642 * 15 14 13 17 17 C 1.47843 * 110.99640 * 174.27978 * 13 3 2 18 18 H 1.09001 * 110.37314 * 27.42672 * 17 13 3 19 19 C 1.50698 * 110.37839 * 265.19319 * 17 13 3 20 20 C 1.38110 * 120.03657 * 339.72693 * 19 17 13 21 21 C 1.38279 * 120.07547 * 179.76597 * 20 19 17 22 22 C 1.38324 * 120.16120 * 0.51039 * 21 20 19 23 23 C 1.38053 * 120.08623 * 359.74390 * 22 21 20 24 24 C 1.38951 * 120.04346 * 160.00374 * 19 17 13 25 25 S 1.76197 * 120.07693 * 359.97438 * 24 19 17 26 26 C 1.81409 * 102.99760 * 180.02562 * 25 24 19 27 27 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47365 * 299.99978 * 1 2 3 29 29 H 1.09000 * 109.47386 * 59.99788 * 1 2 3 30 30 H 1.09009 * 109.46871 * 240.00573 * 2 1 3 31 31 H 1.08992 * 109.47178 * 119.99963 * 2 1 3 32 32 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.88998 * 356.14887 * 14 13 3 34 34 H 1.09003 * 109.88733 * 117.17548 * 14 13 3 35 35 H 1.09005 * 110.70342 * 96.18020 * 15 14 13 36 36 H 1.08997 * 110.70605 * 219.41644 * 15 14 13 37 37 H 1.08995 * 110.87020 * 277.39488 * 16 15 14 38 38 H 1.08997 * 111.05714 * 153.64720 * 16 15 14 39 39 H 1.07997 * 119.95885 * 0.02562 * 20 19 17 40 40 H 1.08008 * 119.91844 * 180.23396 * 21 20 19 41 41 H 1.08004 * 119.95791 * 179.76779 * 22 21 20 42 42 H 1.07994 * 120.04921 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46849 * 299.99760 * 26 25 24 44 44 H 1.08999 * 109.47106 * 60.00377 * 26 25 24 45 45 H 1.09001 * 109.46927 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7942 0.2359 3.8754 12 1 1.7882 0.8093 2.6394 13 7 1.6513 2.0993 -1.2552 14 6 2.3151 1.4670 -2.4100 15 6 3.0977 2.5704 -3.1526 16 6 2.3766 3.8709 -2.7012 17 6 2.0077 3.5340 -1.2348 18 1 2.8612 3.7038 -0.5785 19 6 0.8300 4.3609 -0.7870 20 6 -0.4482 3.8441 -0.8678 21 6 -1.5289 4.6003 -0.4526 22 6 -1.3352 5.8802 0.0351 23 6 -0.0609 6.4053 0.1140 24 6 1.0283 5.6462 -0.2976 25 16 2.6567 6.3120 -0.1989 26 6 2.3793 7.9684 0.4867 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 5.8770 0.4826 2.1131 33 1 3.0014 0.6935 -2.0654 34 1 1.5685 1.0311 -3.0739 35 1 4.1415 2.5803 -2.8387 36 1 3.0199 2.4384 -4.2317 37 1 1.4818 4.0460 -3.2985 38 1 3.0487 4.7277 -2.7478 39 1 -0.6034 2.8468 -1.2519 40 1 -2.5271 4.1923 -0.5134 41 1 -2.1820 6.4693 0.3550 42 1 0.0896 7.4047 0.4944 43 1 1.7346 8.5361 -0.1843 44 1 1.9020 7.8824 1.4629 45 1 3.3348 8.4820 0.5939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:04 Heat of formation + Delta-G solvation = 31.252496 kcal Electronic energy + Delta-G solvation = -24183.087385 eV Core-core repulsion = 21098.501886 eV Total energy + Delta-G solvation = -3084.585499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.49339 -37.86392 -34.35145 -31.95250 -31.53387 -30.99123 -29.69012 -28.70408 -27.18747 -26.65590 -22.83253 -22.51829 -22.26812 -21.10764 -19.85268 -18.78645 -17.43849 -16.77063 -15.93362 -15.51347 -15.01513 -14.41947 -14.24610 -13.98452 -13.85910 -13.75402 -13.46103 -13.11922 -12.92626 -12.60047 -12.45372 -12.31995 -12.16632 -11.94978 -11.58205 -11.48926 -11.06144 -10.95993 -10.84682 -10.64729 -10.55134 -10.36765 -10.12043 -10.06013 -9.74374 -9.70753 -9.43781 -9.39433 -9.16198 -8.53294 -8.39313 -7.24286 -7.08998 -6.09009 -4.08478 1.52455 1.69786 1.77391 2.66937 3.27230 3.39237 3.41702 4.01467 4.40393 4.78656 5.07498 5.08049 5.09865 5.21627 5.22981 5.30672 5.39478 5.52438 5.64547 5.67761 5.77594 5.84302 6.00750 6.03852 6.09789 6.13094 6.21362 6.24348 6.32710 6.40505 6.46226 6.56512 6.66048 6.67064 6.75469 6.79068 6.81966 6.86689 6.98967 7.04401 7.10648 7.26596 7.30897 7.59760 8.06789 8.15727 8.47353 8.94223 9.55008 11.03630 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006164 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.343616 B = 4541.068263 C = 4850.866225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.177 3.823 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.512 5.512 14 C 0.048 3.952 15 C -0.136 4.136 16 C -0.114 4.114 17 C 0.108 3.892 18 H 0.092 0.908 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.141 4.141 24 C -0.087 4.087 25 S -0.097 6.097 26 C -0.155 4.155 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 9.808 -5.025 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.069 3.931 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.235 5.235 14 C -0.080 4.080 15 C -0.175 4.175 16 C -0.152 4.152 17 C -0.001 4.001 18 H 0.109 0.891 19 C -0.040 4.040 20 C -0.095 4.095 21 C -0.154 4.154 22 C -0.136 4.136 23 C -0.165 4.165 24 C -0.200 4.200 25 S 0.146 5.854 26 C -0.324 4.324 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.847 9.306 -5.220 14.520 hybrid contribution -0.781 0.164 1.487 1.688 sum -10.628 9.470 -3.733 14.716 Atomic orbital electron populations 1.21745 0.97507 0.99311 1.01505 1.21913 0.93962 0.99292 1.00620 1.19857 0.94641 0.90416 0.88194 0.94574 1.21642 0.90383 1.38781 1.07156 0.90279 1.24951 0.94648 0.95372 0.97720 1.69907 1.08765 1.45065 1.29650 0.86918 0.80885 0.79754 0.81083 1.20622 1.22667 1.18904 1.63583 1.55427 1.00519 1.04003 1.22653 0.96184 0.97211 0.91976 1.22795 1.00180 0.95214 0.99278 1.22671 0.99760 0.97749 0.95031 1.21382 0.93797 0.88649 0.96301 0.89063 1.19628 0.95813 0.91478 0.97100 1.21169 0.90898 1.00176 0.97277 1.21185 0.98909 0.94647 1.00678 1.20889 0.96075 0.96028 1.00563 1.20971 0.92492 0.99471 1.03522 1.21618 0.96269 0.97814 1.04310 1.85928 1.06574 1.13258 1.79680 1.23697 1.06450 0.98171 1.04034 0.94831 0.94003 0.92050 0.92284 0.93582 0.92742 0.90587 0.92668 0.91237 0.92104 0.91754 0.91254 0.84104 0.86472 0.86632 0.86565 0.90280 0.90156 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.16 0.36 -2.22 16 2 C -0.12 -2.57 4.80 -26.73 -0.13 -2.70 16 3 C 0.18 4.05 1.28 -68.86 -0.09 3.97 16 4 H 0.04 0.91 7.18 -51.93 -0.37 0.54 16 5 C -0.54 -14.48 6.76 -34.44 -0.23 -14.71 16 6 H 0.08 2.29 6.55 -52.49 -0.34 1.94 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 9 Si 0.88 22.07 24.41 -169.99 -4.15 17.92 16 10 H -0.28 -6.81 6.83 56.52 0.39 -6.42 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.51 -10.07 2.95 -218.20 -0.64 -10.71 16 14 C 0.05 0.89 5.30 -2.84 -0.02 0.87 16 15 C -0.14 -2.31 6.74 -24.77 -0.17 -2.48 16 16 C -0.11 -1.90 6.49 -24.45 -0.16 -2.06 16 17 C 0.11 2.06 1.72 -67.34 -0.12 1.94 16 18 H 0.09 2.08 5.80 -51.93 -0.30 1.78 16 19 C -0.03 -0.60 5.12 -104.41 -0.53 -1.14 16 20 C -0.08 -1.22 9.35 -39.61 -0.37 -1.59 16 21 C -0.13 -1.86 10.04 -39.53 -0.40 -2.26 16 22 C -0.12 -1.53 10.04 -39.62 -0.40 -1.93 16 23 C -0.14 -1.99 9.36 -39.37 -0.37 -2.36 16 24 C -0.09 -1.43 6.11 -39.03 -0.24 -1.67 16 25 S -0.10 -1.52 20.96 -107.50 -2.25 -3.78 16 26 C -0.15 -1.68 9.15 101.05 0.92 -0.76 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.03 7.65 -51.93 -0.40 0.64 16 30 H 0.06 1.23 6.69 -51.92 -0.35 0.89 16 31 H 0.05 1.06 3.22 -51.93 -0.17 0.90 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.08 1.61 5.68 -51.93 -0.30 1.31 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.14 2.30 7.08 -52.49 -0.37 1.93 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.12 1.37 5.88 -52.49 -0.31 1.06 16 43 H 0.08 0.75 7.75 -51.93 -0.40 0.34 16 44 H 0.08 0.83 7.75 -51.92 -0.40 0.43 16 45 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -29.31 350.63 -10.11 -39.41 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.10 Total: 5.10 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -2.02 Total: -27.04 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.13 Total: -36.91 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.15 Total: 17.92 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.25 Total: -3.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.31 -10.11 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.667 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds