Wall clock time and date at job start Tue Mar 31 2020 08:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 H 1.08999 * 109.46854 * 55.00363 * 3 2 1 5 5 C 1.50701 * 109.46991 * 175.00114 * 3 2 1 6 6 H 1.08000 * 119.99885 * 120.00250 * 5 3 2 7 7 C 1.37875 * 119.99994 * 300.00231 * 5 3 2 8 8 N 1.31512 * 120.00083 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 120.00015 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46960 * 90.00136 * 9 7 5 11 11 H 1.48503 * 109.46964 * 210.00207 * 9 7 5 12 12 H 1.48497 * 109.46923 * 330.00176 * 9 7 5 13 13 N 1.46904 * 109.47141 * 295.00036 * 3 2 1 14 14 C 1.47439 * 111.00045 * 295.12687 * 13 3 2 15 15 C 1.54322 * 107.36952 * 236.65966 * 14 13 3 16 16 C 1.55398 * 102.90031 * 337.89642 * 15 14 13 17 17 C 1.47843 * 110.99640 * 174.27978 * 13 3 2 18 18 H 1.09001 * 110.37314 * 27.42672 * 17 13 3 19 19 C 1.50698 * 110.37839 * 265.19319 * 17 13 3 20 20 C 1.38110 * 120.03657 * 339.72693 * 19 17 13 21 21 C 1.38279 * 120.07547 * 179.76597 * 20 19 17 22 22 C 1.38324 * 120.16120 * 0.51039 * 21 20 19 23 23 C 1.38053 * 120.08623 * 359.74390 * 22 21 20 24 24 C 1.38951 * 120.04346 * 160.00374 * 19 17 13 25 25 S 1.76197 * 120.07693 * 359.97438 * 24 19 17 26 26 C 1.81409 * 102.99760 * 180.02562 * 25 24 19 27 27 H 1.09005 * 109.46991 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47365 * 299.99978 * 1 2 3 29 29 H 1.09000 * 109.47386 * 59.99788 * 1 2 3 30 30 H 1.09009 * 109.46871 * 240.00573 * 2 1 3 31 31 H 1.08992 * 109.47178 * 119.99963 * 2 1 3 32 32 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.88998 * 356.14887 * 14 13 3 34 34 H 1.09003 * 109.88733 * 117.17548 * 14 13 3 35 35 H 1.09005 * 110.70342 * 96.18020 * 15 14 13 36 36 H 1.08997 * 110.70605 * 219.41644 * 15 14 13 37 37 H 1.08995 * 110.87020 * 277.39488 * 16 15 14 38 38 H 1.08997 * 111.05714 * 153.64720 * 16 15 14 39 39 H 1.07997 * 119.95885 * 0.02562 * 20 19 17 40 40 H 1.08008 * 119.91844 * 180.23396 * 21 20 19 41 41 H 1.08004 * 119.95791 * 179.76779 * 22 21 20 42 42 H 1.07994 * 120.04921 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.46849 * 299.99760 * 26 25 24 44 44 H 1.08999 * 109.47106 * 60.00377 * 26 25 24 45 45 H 1.09001 * 109.46927 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7942 0.2359 3.8754 12 1 1.7882 0.8093 2.6394 13 7 1.6513 2.0993 -1.2552 14 6 2.3151 1.4670 -2.4100 15 6 3.0977 2.5704 -3.1526 16 6 2.3766 3.8709 -2.7012 17 6 2.0077 3.5340 -1.2348 18 1 2.8612 3.7038 -0.5785 19 6 0.8300 4.3609 -0.7870 20 6 -0.4482 3.8441 -0.8678 21 6 -1.5289 4.6003 -0.4526 22 6 -1.3352 5.8802 0.0351 23 6 -0.0609 6.4053 0.1140 24 6 1.0283 5.6462 -0.2976 25 16 2.6567 6.3120 -0.1989 26 6 2.3793 7.9684 0.4867 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 5.8770 0.4826 2.1131 33 1 3.0014 0.6935 -2.0654 34 1 1.5685 1.0311 -3.0739 35 1 4.1415 2.5803 -2.8387 36 1 3.0199 2.4384 -4.2317 37 1 1.4818 4.0460 -3.2985 38 1 3.0487 4.7277 -2.7478 39 1 -0.6034 2.8468 -1.2519 40 1 -2.5271 4.1923 -0.5134 41 1 -2.1820 6.4693 0.3550 42 1 0.0896 7.4047 0.4944 43 1 1.7346 8.5361 -0.1843 44 1 1.9020 7.8824 1.4629 45 1 3.3348 8.4820 0.5939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:03 Heat of formation + Delta-G solvation = 15.621366 kcal Electronic energy + Delta-G solvation = -24183.765202 eV Core-core repulsion = 21098.501886 eV Total energy + Delta-G solvation = -3085.263315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88881 -39.20731 -36.05730 -34.03022 -32.78410 -32.09093 -31.23208 -29.63587 -28.64624 -28.45279 -24.57711 -23.76954 -23.53921 -22.65389 -21.27402 -20.48873 -19.00071 -18.32497 -17.51119 -16.90468 -16.53077 -15.94758 -15.57572 -15.32686 -15.18437 -14.87399 -14.71757 -14.61403 -14.52296 -14.20560 -13.87846 -13.64913 -13.47601 -13.27459 -13.15342 -12.85105 -12.73460 -12.59938 -12.36870 -12.11720 -11.96332 -11.90601 -11.70261 -11.57661 -11.48894 -11.23446 -11.11696 -10.90947 -10.67033 -10.53312 -9.57483 -8.94253 -8.30358 -8.29674 -6.31493 0.38759 0.56182 0.68848 1.25123 1.31816 1.41164 1.62213 2.29497 2.87135 3.05553 3.28349 3.81179 3.96707 4.09401 4.14293 4.24931 4.26940 4.28372 4.34199 4.39414 4.45139 4.60221 4.61795 4.66201 4.73647 4.80389 4.83421 4.93990 4.96378 5.00854 5.06537 5.11297 5.17755 5.20529 5.28647 5.29774 5.43207 5.45487 5.50885 5.55865 5.61350 5.69257 5.79670 6.14961 6.21529 6.42040 6.45841 6.76768 7.35024 8.86044 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006164 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.343616 B = 4541.068263 C = 4850.866225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.121 4.121 3 C 0.188 3.812 4 H 0.015 0.985 5 C -0.528 4.528 6 H 0.042 0.958 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.940 3.060 10 H -0.265 1.265 11 H -0.303 1.303 12 H -0.254 1.254 13 N -0.498 5.498 14 C 0.046 3.954 15 C -0.132 4.132 16 C -0.103 4.103 17 C 0.112 3.888 18 H 0.044 0.956 19 C -0.062 4.062 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.097 4.097 25 S -0.173 6.173 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 10.811 -5.273 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.079 3.921 4 H 0.033 0.967 5 C -0.567 4.567 6 H 0.060 0.940 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.232 1.232 12 H -0.178 1.178 13 N -0.221 5.221 14 C -0.082 4.082 15 C -0.170 4.170 16 C -0.141 4.141 17 C 0.002 3.998 18 H 0.062 0.938 19 C -0.068 4.068 20 C -0.108 4.108 21 C -0.151 4.151 22 C -0.128 4.128 23 C -0.166 4.166 24 C -0.210 4.210 25 S 0.069 5.931 26 C -0.303 4.303 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.794 10.310 -5.487 18.075 hybrid contribution 0.461 -0.005 1.503 1.573 sum -13.333 10.305 -3.984 17.316 Atomic orbital electron populations 1.21651 0.94254 1.01114 1.02042 1.21835 0.96832 0.97305 0.99877 1.19614 0.91486 0.91779 0.89209 0.96724 1.21912 0.92593 1.36563 1.05594 0.93956 1.25722 0.95579 0.96465 1.00203 1.70053 1.10612 1.47288 1.30655 0.85983 0.79542 0.79670 0.77981 1.19141 1.23156 1.17788 1.63669 1.54702 1.00889 1.02806 1.22710 0.96468 0.96833 0.92141 1.22749 0.98204 0.94980 1.01047 1.22603 1.00262 0.97349 0.93907 1.21228 0.93381 0.88405 0.96743 0.93794 1.19569 0.95709 0.92229 0.99336 1.21221 0.90991 1.00433 0.98140 1.21523 0.99468 0.94727 0.99361 1.21341 0.96697 0.95936 0.98872 1.21338 0.92239 1.00322 1.02693 1.21693 0.96456 0.97834 1.04976 1.86183 1.08463 1.17684 1.80755 1.23739 1.07869 0.94350 1.04310 0.92375 0.94194 0.90791 0.92191 0.95176 0.92871 0.93800 0.89700 0.94241 0.88759 0.89919 0.91415 0.84509 0.83513 0.82974 0.84158 0.88285 0.89307 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.80 71.98 0.71 -3.74 16 2 C -0.12 -5.08 4.80 30.60 0.15 -4.93 16 3 C 0.19 8.80 1.28 44.17 0.06 8.85 16 4 H 0.01 0.76 7.18 -2.39 -0.02 0.74 16 5 C -0.53 -29.81 6.76 25.60 0.17 -29.64 16 6 H 0.04 2.65 6.55 -2.91 -0.02 2.63 16 7 C 0.02 1.06 5.45 84.65 0.46 1.53 16 8 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 9 Si 0.94 46.65 24.41 68.60 1.67 48.32 16 10 H -0.27 -12.48 6.83 99.48 0.68 -11.80 16 11 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 12 H -0.25 -12.01 6.53 99.48 0.65 -11.36 16 13 N -0.50 -19.78 2.95 -844.26 -2.49 -22.27 16 14 C 0.05 1.74 5.30 86.65 0.46 2.20 16 15 C -0.13 -4.54 6.74 31.87 0.21 -4.32 16 16 C -0.10 -3.49 6.49 32.07 0.21 -3.28 16 17 C 0.11 4.40 1.72 44.64 0.08 4.48 16 18 H 0.04 2.16 5.80 -2.39 -0.01 2.15 16 19 C -0.06 -2.19 5.12 -19.72 -0.10 -2.29 16 20 C -0.09 -2.70 9.35 22.25 0.21 -2.49 16 21 C -0.13 -3.17 10.04 22.30 0.22 -2.94 16 22 C -0.11 -2.42 10.04 22.25 0.22 -2.20 16 23 C -0.14 -3.63 9.36 22.41 0.21 -3.42 16 24 C -0.10 -3.12 6.11 22.62 0.14 -2.98 16 25 S -0.17 -5.56 20.96 -56.49 -1.18 -6.75 16 26 C -0.13 -2.69 9.15 113.37 1.04 -1.65 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.28 7.65 -2.39 -0.02 2.26 16 30 H 0.06 2.48 6.69 -2.38 -0.02 2.47 16 31 H 0.03 1.36 3.22 -2.39 -0.01 1.35 16 32 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.04 1.92 5.68 -2.39 -0.01 1.91 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.04 1.58 7.80 -2.38 -0.02 1.56 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.08 2.50 8.05 -2.39 -0.02 2.48 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.14 4.20 7.08 -2.91 -0.02 4.18 16 40 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 41 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.14 2.80 5.88 -2.91 -0.02 2.78 16 43 H 0.10 1.59 7.75 -2.39 -0.02 1.57 16 44 H 0.09 1.63 7.75 -2.39 -0.02 1.62 16 45 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.40 350.63 3.63 -64.77 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.88 Total: 22.44 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 4.44 Total: -46.85 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.19 Total: -81.93 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.67 Total: 48.32 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -1.18 Total: -6.75 kcal Total: -68.40 3.63 -64.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.390 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds