Wall clock time and date at job start Tue Mar 31 2020 08:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47287 * 2 1 4 4 H 1.08994 * 109.47073 * 183.11588 * 3 2 1 5 5 C 1.50704 * 109.46805 * 63.11624 * 3 2 1 6 6 H 1.07996 * 120.00063 * 241.78519 * 5 3 2 7 7 C 1.37878 * 119.99814 * 61.79569 * 5 3 2 8 8 N 1.31517 * 119.99556 * 197.32389 * 7 5 3 9 9 Si 1.86801 * 120.00243 * 17.32122 * 7 5 3 10 10 H 1.48498 * 109.46935 * 89.51268 * 9 7 5 11 11 H 1.48499 * 109.47042 * 209.51017 * 9 7 5 12 12 H 1.48496 * 109.47052 * 329.50961 * 9 7 5 13 13 N 1.46895 * 109.47174 * 303.12178 * 3 2 1 14 14 C 1.46849 * 111.00237 * 177.02868 * 13 3 2 15 15 C 1.53040 * 109.52459 * 185.83613 * 14 13 3 16 16 C 1.53124 * 109.27719 * 300.82178 * 15 14 13 17 17 S 1.81394 * 109.52147 * 177.56190 * 16 15 14 18 18 C 1.76196 * 102.99999 * 171.18304 * 17 16 15 19 19 C 1.38976 * 120.07852 * 88.41164 * 18 17 16 20 20 C 1.38089 * 119.91926 * 179.97438 * 19 18 17 21 21 C 1.38306 * 120.07715 * 359.97438 * 20 19 18 22 22 C 1.38307 * 120.16204 * 359.97438 * 21 20 19 23 23 C 1.38075 * 120.08079 * 0.02562 * 22 21 20 24 24 C 1.53119 * 109.16185 * 57.65015 * 16 15 14 25 25 C 1.46852 * 110.99701 * 301.23397 * 13 3 2 26 26 H 1.08999 * 109.47373 * 304.20468 * 1 2 3 27 27 H 1.09003 * 109.47337 * 64.20032 * 1 2 3 28 28 H 1.09001 * 109.47584 * 184.19916 * 1 2 3 29 29 H 1.09000 * 109.47380 * 239.99683 * 2 1 3 30 30 H 1.09002 * 109.46833 * 119.99946 * 2 1 3 31 31 H 0.97000 * 119.99711 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.45904 * 65.82026 * 14 13 3 33 33 H 1.09000 * 109.45903 * 305.85228 * 14 13 3 34 34 H 1.08999 * 109.50316 * 180.87828 * 15 14 13 35 35 H 1.09003 * 109.49900 * 60.75870 * 15 14 13 36 36 H 1.09005 * 109.51902 * 297.68390 * 16 15 14 37 37 H 1.07998 * 120.04338 * 359.69823 * 19 18 17 38 38 H 1.07998 * 119.96349 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.91730 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.95775 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.04306 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.50122 * 62.29237 * 24 16 15 43 43 H 1.08999 * 109.49992 * 182.40136 * 24 16 15 44 44 H 1.08991 * 109.46595 * 294.17745 * 25 13 3 45 45 H 1.09009 * 109.46164 * 54.14788 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 -0.0559 5 6 1.6017 2.1302 1.2673 6 1 0.9534 2.9925 1.2173 7 6 2.0285 1.6586 2.4906 8 7 1.4014 2.0184 3.5892 9 14 3.4975 0.5087 2.5876 10 1 4.7421 1.3064 2.7281 11 1 3.3482 -0.3870 3.7626 12 1 3.5697 -0.3074 1.3491 13 7 1.4897 2.1564 -1.1599 14 6 1.9019 3.5659 -1.1544 15 6 1.1957 4.3097 -2.2903 16 6 1.5614 3.6567 -3.6263 17 16 0.6714 4.4878 -4.9708 18 6 1.4017 3.7952 -6.4170 19 6 0.8869 2.6269 -6.9660 20 6 1.4615 2.0872 -8.0998 21 6 2.5476 2.7083 -8.6892 22 6 3.0619 3.8718 -8.1462 23 6 2.4925 4.4171 -7.0127 24 6 1.1658 2.1780 -3.5879 25 6 1.8728 1.4961 -2.4144 26 1 -0.3634 0.5777 0.8499 27 1 -0.3634 0.4473 -0.9252 28 1 -0.3634 -1.0249 0.0752 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7014 1.6863 4.4498 32 1 2.9810 3.6292 -1.2945 33 1 1.6323 4.0193 -0.2006 34 1 1.5138 5.3522 -2.2957 35 1 0.1169 4.2584 -2.1434 36 1 2.6352 3.7433 -3.7921 37 1 0.0414 2.1391 -6.5039 38 1 1.0623 1.1791 -8.5268 39 1 2.9952 2.2838 -9.5757 40 1 3.9098 4.3542 -8.6094 41 1 2.8949 5.3253 -6.5889 42 1 0.0864 2.0933 -3.4615 43 1 1.4623 1.6977 -4.5203 44 1 2.9519 1.5692 -2.5486 45 1 1.5820 0.4462 -2.3758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:54 Heat of formation + Delta-G solvation = 26.303881 kcal Electronic energy + Delta-G solvation = -22995.862067 eV Core-core repulsion = 19911.061980 eV Total energy + Delta-G solvation = -3084.800087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.13638 -38.65028 -34.99587 -32.06904 -31.39001 -31.21196 -30.81757 -30.23025 -26.93005 -23.99827 -23.35939 -22.84436 -22.71705 -22.00084 -19.88346 -19.01271 -17.92541 -16.50735 -16.29839 -15.74014 -15.22269 -15.04832 -14.49655 -14.25502 -14.10175 -13.72718 -13.67418 -13.46269 -13.26137 -13.05062 -12.76580 -12.55686 -12.27470 -11.96569 -11.67465 -11.43016 -11.12655 -11.03275 -10.90206 -10.79186 -10.58495 -10.46239 -10.13867 -10.10726 -9.99930 -9.88545 -9.28048 -9.20859 -8.95854 -8.85496 -8.40913 -7.74444 -7.31339 -6.10954 -4.02613 0.75255 1.12787 1.76372 2.64077 3.25983 3.35524 3.38278 3.52285 4.40949 4.62546 4.69226 4.70435 4.81766 4.90915 4.96985 5.17886 5.21583 5.24098 5.38163 5.47907 5.59411 5.73246 5.77683 5.86372 5.91354 6.04197 6.07277 6.08681 6.13532 6.13789 6.19434 6.27136 6.32844 6.40365 6.43938 6.62667 6.63768 6.70986 6.81446 6.98616 7.10643 7.20162 7.53578 7.69730 7.96755 8.09249 8.64865 9.00091 9.55752 11.01496 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.003376 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.906530 B = 8292.672898 C = 8549.456059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.192 3.808 4 H -0.011 1.011 5 C -0.507 4.507 6 H 0.082 0.918 7 C 0.078 3.922 8 N -0.888 5.888 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.517 5.517 14 C 0.069 3.931 15 C -0.095 4.095 16 C -0.054 4.054 17 S -0.166 6.166 18 C -0.109 4.109 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.076 4.076 24 C -0.105 4.105 25 C 0.052 3.948 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.019 0.981 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.019 0.981 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.018 0.982 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 1.377 -21.814 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.084 3.916 4 H 0.007 0.993 5 C -0.545 4.545 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.242 5.242 14 C -0.060 4.060 15 C -0.135 4.135 16 C -0.182 4.182 17 S 0.070 5.930 18 C -0.220 4.220 19 C -0.093 4.093 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.150 4.150 23 C -0.096 4.096 24 C -0.144 4.144 25 C -0.078 4.078 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.445 2.172 -21.480 21.594 hybrid contribution 2.850 -1.591 -0.104 3.266 sum 3.295 0.581 -21.584 21.842 Atomic orbital electron populations 1.21478 0.95573 0.98279 1.02880 1.21940 0.97189 0.97654 0.98656 1.19590 0.91664 0.91007 0.89300 0.99323 1.20827 1.30786 1.15135 0.87755 0.90046 1.24829 0.96213 0.95661 0.95723 1.69985 1.38470 1.45712 0.98376 0.87359 0.84437 0.81678 0.78155 1.20854 1.21401 1.17939 1.61860 1.59845 1.01293 1.01172 1.21985 0.95693 0.89722 0.98641 1.21495 1.02534 0.98444 0.90982 1.23498 1.00853 0.98337 0.95470 1.85500 1.53572 1.57647 0.96242 1.21757 1.00264 0.99305 1.00665 1.21663 0.98668 0.93960 0.94988 1.21232 0.96909 1.00418 0.96365 1.21312 0.95959 0.95315 0.99366 1.21204 1.00502 0.96679 0.96607 1.21621 0.93941 0.99042 0.95004 1.21892 1.02299 0.92525 0.97701 1.22123 0.96221 0.98981 0.90481 0.91007 0.93203 0.96146 0.95500 0.92701 0.92725 0.96232 0.88245 0.91351 0.90290 0.90228 0.85057 0.85597 0.85839 0.85682 0.85261 0.90033 0.92470 0.96358 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.51 37.15 0.35 -2.21 16 2 C -0.12 -2.50 4.50 -26.73 -0.12 -2.62 16 3 C 0.19 4.36 1.32 -68.87 -0.09 4.27 16 4 H -0.01 -0.25 6.97 -51.93 -0.36 -0.62 16 5 C -0.51 -13.41 7.08 -34.44 -0.24 -13.66 16 6 H 0.08 2.35 6.81 -52.49 -0.36 1.99 16 7 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 9 Si 0.86 20.74 25.81 -169.99 -4.39 16.35 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.86 5.42 56.52 0.31 -5.55 16 13 N -0.52 -10.13 3.70 -228.08 -0.84 -10.97 16 14 C 0.07 1.28 5.22 -3.83 -0.02 1.26 16 15 C -0.10 -1.45 5.39 -26.65 -0.14 -1.59 16 16 C -0.05 -0.75 2.67 -26.61 -0.07 -0.82 16 17 S -0.17 -2.18 21.08 -107.50 -2.27 -4.45 16 18 C -0.11 -1.29 5.43 -39.03 -0.21 -1.51 16 19 C -0.07 -0.78 8.87 -39.36 -0.35 -1.13 16 20 C -0.13 -1.17 10.04 -39.61 -0.40 -1.57 16 21 C -0.10 -0.85 10.04 -39.53 -0.40 -1.25 16 22 C -0.13 -1.16 10.04 -39.62 -0.40 -1.56 16 23 C -0.08 -0.80 9.79 -39.37 -0.39 -1.19 16 24 C -0.10 -1.49 5.29 -26.65 -0.14 -1.63 16 25 C 0.05 0.87 5.13 -3.83 -0.02 0.85 16 26 H 0.07 1.68 7.18 -51.93 -0.37 1.31 16 27 H 0.05 0.97 7.60 -51.93 -0.39 0.57 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.52 6.43 -51.93 -0.33 0.18 16 30 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 2.05 6.13 -51.93 -0.32 1.73 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.75 7.01 -51.93 -0.36 0.38 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 1.29 6.04 -51.92 -0.31 0.98 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -28.46 354.24 -11.48 -39.94 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.36 Total: 1.46 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -2.73 Total: -22.29 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.07 Total: -36.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.39 Total: 16.35 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.27 Total: -4.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.46 -11.48 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.246 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds