Wall clock time and date at job start Tue Mar 31 2020 08:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47287 * 2 1 4 4 H 1.08994 * 109.47073 * 183.11588 * 3 2 1 5 5 C 1.50704 * 109.46805 * 63.11624 * 3 2 1 6 6 H 1.07996 * 120.00063 * 241.78519 * 5 3 2 7 7 C 1.37878 * 119.99814 * 61.79569 * 5 3 2 8 8 N 1.31517 * 119.99556 * 197.32389 * 7 5 3 9 9 Si 1.86801 * 120.00243 * 17.32122 * 7 5 3 10 10 H 1.48498 * 109.46935 * 89.51268 * 9 7 5 11 11 H 1.48499 * 109.47042 * 209.51017 * 9 7 5 12 12 H 1.48496 * 109.47052 * 329.50961 * 9 7 5 13 13 N 1.46895 * 109.47174 * 303.12178 * 3 2 1 14 14 C 1.46849 * 111.00237 * 177.02868 * 13 3 2 15 15 C 1.53040 * 109.52459 * 185.83613 * 14 13 3 16 16 C 1.53124 * 109.27719 * 300.82178 * 15 14 13 17 17 S 1.81394 * 109.52147 * 177.56190 * 16 15 14 18 18 C 1.76196 * 102.99999 * 171.18304 * 17 16 15 19 19 C 1.38976 * 120.07852 * 88.41164 * 18 17 16 20 20 C 1.38089 * 119.91926 * 179.97438 * 19 18 17 21 21 C 1.38306 * 120.07715 * 359.97438 * 20 19 18 22 22 C 1.38307 * 120.16204 * 359.97438 * 21 20 19 23 23 C 1.38075 * 120.08079 * 0.02562 * 22 21 20 24 24 C 1.53119 * 109.16185 * 57.65015 * 16 15 14 25 25 C 1.46852 * 110.99701 * 301.23397 * 13 3 2 26 26 H 1.08999 * 109.47373 * 304.20468 * 1 2 3 27 27 H 1.09003 * 109.47337 * 64.20032 * 1 2 3 28 28 H 1.09001 * 109.47584 * 184.19916 * 1 2 3 29 29 H 1.09000 * 109.47380 * 239.99683 * 2 1 3 30 30 H 1.09002 * 109.46833 * 119.99946 * 2 1 3 31 31 H 0.97000 * 119.99711 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.45904 * 65.82026 * 14 13 3 33 33 H 1.09000 * 109.45903 * 305.85228 * 14 13 3 34 34 H 1.08999 * 109.50316 * 180.87828 * 15 14 13 35 35 H 1.09003 * 109.49900 * 60.75870 * 15 14 13 36 36 H 1.09005 * 109.51902 * 297.68390 * 16 15 14 37 37 H 1.07998 * 120.04338 * 359.69823 * 19 18 17 38 38 H 1.07998 * 119.96349 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.91730 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.95775 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.04306 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.50122 * 62.29237 * 24 16 15 43 43 H 1.08999 * 109.49992 * 182.40136 * 24 16 15 44 44 H 1.08991 * 109.46595 * 294.17745 * 25 13 3 45 45 H 1.09009 * 109.46164 * 54.14788 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1285 1.4430 -0.0559 5 6 1.6017 2.1302 1.2673 6 1 0.9534 2.9925 1.2173 7 6 2.0285 1.6586 2.4906 8 7 1.4014 2.0184 3.5892 9 14 3.4975 0.5087 2.5876 10 1 4.7421 1.3064 2.7281 11 1 3.3482 -0.3870 3.7626 12 1 3.5697 -0.3074 1.3491 13 7 1.4897 2.1564 -1.1599 14 6 1.9019 3.5659 -1.1544 15 6 1.1957 4.3097 -2.2903 16 6 1.5614 3.6567 -3.6263 17 16 0.6714 4.4878 -4.9708 18 6 1.4017 3.7952 -6.4170 19 6 0.8869 2.6269 -6.9660 20 6 1.4615 2.0872 -8.0998 21 6 2.5476 2.7083 -8.6892 22 6 3.0619 3.8718 -8.1462 23 6 2.4925 4.4171 -7.0127 24 6 1.1658 2.1780 -3.5879 25 6 1.8728 1.4961 -2.4144 26 1 -0.3634 0.5777 0.8499 27 1 -0.3634 0.4473 -0.9252 28 1 -0.3634 -1.0249 0.0752 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.7014 1.6863 4.4498 32 1 2.9810 3.6292 -1.2945 33 1 1.6323 4.0193 -0.2006 34 1 1.5138 5.3522 -2.2957 35 1 0.1169 4.2584 -2.1434 36 1 2.6352 3.7433 -3.7921 37 1 0.0414 2.1391 -6.5039 38 1 1.0623 1.1791 -8.5268 39 1 2.9952 2.2838 -9.5757 40 1 3.9098 4.3542 -8.6094 41 1 2.8949 5.3253 -6.5889 42 1 0.0864 2.0933 -3.4615 43 1 1.4623 1.6977 -4.5203 44 1 2.9519 1.5692 -2.5486 45 1 1.5820 0.4462 -2.3758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:53 Heat of formation + Delta-G solvation = 12.239280 kcal Electronic energy + Delta-G solvation = -22996.471954 eV Core-core repulsion = 19911.061980 eV Total energy + Delta-G solvation = -3085.409974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.16461 -39.81257 -36.61035 -34.06660 -32.59144 -31.93244 -31.88958 -31.57404 -28.77950 -25.66546 -24.69534 -23.75652 -23.59749 -23.32524 -21.41228 -20.55185 -18.73590 -18.46428 -17.50265 -16.97457 -16.31995 -16.06124 -15.85352 -15.73603 -15.27795 -15.16874 -14.76647 -14.67228 -14.55017 -14.40076 -14.31578 -13.88479 -13.60308 -13.26820 -12.92676 -12.87757 -12.59663 -12.41538 -12.18909 -12.12001 -12.09748 -11.99716 -11.79627 -11.69469 -11.32202 -11.15226 -11.07990 -10.80283 -10.48088 -9.91773 -9.70541 -8.94008 -8.74163 -8.25268 -6.19665 -0.04383 0.42316 0.83927 1.32450 1.37642 1.44803 1.66843 2.37110 2.79573 3.05605 3.24188 3.71841 3.73869 3.95311 4.07796 4.15047 4.21246 4.26266 4.36838 4.45815 4.51657 4.52108 4.54485 4.58271 4.62631 4.70846 4.76832 4.79291 4.85703 4.95291 5.07031 5.07243 5.14675 5.17742 5.24036 5.32006 5.40040 5.41815 5.42023 5.43467 5.51856 5.75050 5.85131 5.95848 6.10337 6.43288 6.77088 6.84077 7.41802 8.90889 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.003376 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.906530 B = 8292.672898 C = 8549.456059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C 0.195 3.805 4 H -0.018 1.018 5 C -0.498 4.498 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.938 5.938 9 Si 0.914 3.086 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.230 1.230 13 N -0.526 5.526 14 C 0.072 3.928 15 C -0.084 4.084 16 C -0.049 4.049 17 S -0.175 6.175 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.132 4.132 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.089 4.089 24 C -0.093 4.093 25 C 0.053 3.947 26 H 0.031 0.969 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -0.263 -25.388 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C 0.086 3.914 4 H -0.001 1.001 5 C -0.536 4.536 6 H 0.060 0.940 7 C -0.174 4.174 8 N -0.578 5.578 9 Si 0.739 3.261 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.153 1.153 13 N -0.250 5.250 14 C -0.058 4.058 15 C -0.123 4.123 16 C -0.177 4.177 17 S 0.061 5.939 18 C -0.240 4.240 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.116 4.116 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.077 4.077 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.713 0.533 -25.082 25.146 hybrid contribution 2.412 -0.999 0.868 2.752 sum 4.125 -0.466 -24.214 24.567 Atomic orbital electron populations 1.21346 0.95049 0.99240 1.01552 1.21900 0.97648 0.96486 0.99451 1.19442 0.91134 0.91931 0.88845 1.00104 1.20998 1.29126 1.13773 0.89708 0.93994 1.25569 0.98713 0.97745 0.95356 1.70118 1.40487 1.48125 0.99025 0.86415 0.80656 0.79981 0.79017 1.20861 1.21467 1.15320 1.61795 1.59945 1.01676 1.01618 1.21882 0.95981 0.89470 0.98439 1.21328 1.01384 0.98816 0.90820 1.23314 1.00992 0.98170 0.95205 1.85507 1.53619 1.57815 0.96930 1.21776 1.01458 1.00428 1.00328 1.21776 0.99027 0.93847 0.95891 1.21548 0.96848 1.01089 0.95629 1.21721 0.95307 0.94732 0.99836 1.21526 1.00901 0.96851 0.95880 1.21769 0.93944 0.99394 0.95864 1.21791 1.01596 0.92529 0.97306 1.22199 0.96640 0.99252 0.89588 0.94947 0.92264 0.93586 0.92433 0.93954 0.92814 0.96237 0.91631 0.90140 0.91307 0.90217 0.85013 0.83308 0.82939 0.83359 0.85098 0.90573 0.90631 0.96162 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.51 71.98 0.68 -3.90 16 2 C -0.12 -4.82 4.50 30.59 0.14 -4.68 16 3 C 0.19 8.81 1.32 44.17 0.06 8.87 16 4 H -0.02 -0.86 6.97 -2.39 -0.02 -0.88 16 5 C -0.50 -27.32 7.08 25.60 0.18 -27.13 16 6 H 0.04 2.58 6.81 -2.91 -0.02 2.56 16 7 C 0.02 1.38 5.31 84.65 0.45 1.83 16 8 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 9 Si 0.91 43.06 25.81 68.60 1.77 44.84 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.23 -9.85 5.42 99.48 0.54 -9.31 16 13 N -0.53 -20.51 3.70 -875.51 -3.24 -23.75 16 14 C 0.07 2.72 5.22 86.33 0.45 3.17 16 15 C -0.08 -2.57 5.39 30.65 0.17 -2.41 16 16 C -0.05 -1.31 2.67 30.68 0.08 -1.23 16 17 S -0.18 -4.43 21.08 -56.49 -1.19 -5.62 16 18 C -0.13 -2.84 5.43 22.62 0.12 -2.71 16 19 C -0.08 -1.63 8.87 22.41 0.20 -1.44 16 20 C -0.13 -1.94 10.04 22.25 0.22 -1.72 16 21 C -0.10 -1.28 10.04 22.30 0.22 -1.05 16 22 C -0.13 -1.94 10.04 22.25 0.22 -1.72 16 23 C -0.09 -1.72 9.79 22.41 0.22 -1.50 16 24 C -0.09 -2.47 5.29 30.64 0.16 -2.31 16 25 C 0.05 1.67 5.13 86.32 0.44 2.11 16 26 H 0.03 1.53 7.18 -2.39 -0.02 1.51 16 27 H 0.06 2.22 7.60 -2.39 -0.02 2.20 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 2.03 6.43 -2.39 -0.02 2.02 16 30 H 0.04 1.85 4.65 -2.39 -0.01 1.83 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 2.89 6.13 -2.39 -0.01 2.87 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 1.77 7.01 -2.39 -0.02 1.75 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 2.53 6.04 -2.38 -0.01 2.51 16 Total: -1.00 -63.63 354.24 2.45 -61.18 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.79 Total: 16.41 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 4.03 Total: -35.82 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.94 Total: -80.97 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.77 Total: 44.84 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.19 Total: -5.62 kcal Total: -63.63 2.45 -61.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.418 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds