Wall clock time and date at job start Tue Mar 31 2020 09:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 C 1.50693 * 109.47348 * 240.00113 * 2 1 3 5 5 H 1.08004 * 119.99882 * 239.99809 * 4 2 1 6 6 C 1.37872 * 120.00435 * 59.99729 * 4 2 1 7 7 N 1.31518 * 119.99645 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00336 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47171 * 60.00145 * 8 6 4 10 10 H 1.48501 * 109.47234 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47377 * 299.99987 * 8 6 4 12 12 N 1.46508 * 109.47070 * 119.99820 * 2 1 3 13 13 C 1.46500 * 119.99896 * 60.00268 * 12 2 1 14 14 C 1.34774 * 119.99587 * 240.00336 * 12 2 1 15 15 O 1.21279 * 120.00598 * 5.17073 * 14 12 2 16 16 C 1.50704 * 119.99598 * 185.17062 * 14 12 2 17 17 C 1.50701 * 112.84952 * 68.18461 * 16 14 12 18 18 C 1.38267 * 119.98655 * 54.35606 * 17 16 14 19 19 C 1.38220 * 120.05456 * 179.97438 * 18 17 16 20 20 C 1.38215 * 120.02317 * 0.02562 * 19 18 17 21 21 C 1.38443 * 119.97734 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.02799 * 180.02562 * 21 20 19 23 23 C 1.38173 * 119.98972 * 234.08879 * 17 16 14 24 24 C 1.53785 * 113.61655 * 296.99111 * 16 14 12 25 25 C 1.53782 * 87.08092 * 270.80116 * 24 16 14 26 26 C 1.53784 * 87.16950 * 334.52524 * 25 24 16 27 27 H 1.09000 * 109.46644 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47172 * 299.99803 * 1 2 3 29 29 H 1.08999 * 109.46813 * 60.00488 * 1 2 3 30 30 H 0.97001 * 119.99478 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46654 * 264.83353 * 13 12 2 32 32 H 1.09003 * 109.46826 * 24.83074 * 13 12 2 33 33 H 1.08990 * 109.47119 * 144.83632 * 13 12 2 34 34 H 1.08006 * 119.97222 * 0.03058 * 18 17 16 35 35 H 1.08000 * 119.99128 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.01169 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.01016 * 359.97438 * 23 17 16 38 38 H 1.08995 * 113.61819 * 156.24876 * 24 16 14 39 39 H 1.09005 * 113.68823 * 25.35620 * 24 16 14 40 40 H 1.08996 * 113.61625 * 89.11472 * 25 24 16 41 41 H 1.08997 * 113.61068 * 219.93724 * 25 24 16 42 42 H 1.09005 * 113.61449 * 140.02884 * 26 25 24 43 43 H 1.09003 * 113.61414 * 270.92719 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8261 -2.5202 -4.0076 10 1 1.8272 -0.4199 -5.2204 11 1 3.8066 -1.1209 -4.0081 12 7 2.0184 -0.6906 1.1963 13 6 1.6645 -2.0932 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0091 1.1494 1.9412 16 6 3.3913 -0.7755 3.2521 17 6 4.4415 -1.7735 2.8373 18 6 5.5126 -1.3680 2.0627 19 6 6.4769 -2.2821 1.6819 20 6 6.3712 -3.6030 2.0748 21 6 5.2992 -4.0103 2.8505 22 9 5.1951 -5.3010 3.2355 23 6 4.3366 -3.0923 3.2359 24 6 2.3428 -1.3505 4.2190 25 6 2.4118 -0.0088 4.9673 26 6 3.8351 0.1443 4.4054 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7096 1.1617 -3.4844 31 1 0.7896 -2.1447 2.0761 32 1 1.4401 -2.5735 0.4756 33 1 2.5004 -2.6048 1.9050 34 1 5.5963 -0.3359 1.7556 35 1 7.3129 -1.9643 1.0765 36 1 7.1250 -4.3170 1.7775 37 1 3.5024 -3.4079 3.8449 38 1 2.7052 -2.1959 4.8038 39 1 1.3758 -1.5415 3.7534 40 1 1.7115 0.7372 4.5917 41 1 2.3794 -0.1117 6.0519 42 1 4.0727 1.1600 4.0891 43 1 4.6049 -0.2931 5.0411 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339159819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:42 Heat of formation + Delta-G solvation = -29.253163 kcal Electronic energy + Delta-G solvation = -26198.055877 eV Core-core repulsion = 22544.633480 eV Total energy + Delta-G solvation = -3653.422397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.88449 -40.94437 -38.42881 -37.04085 -35.30945 -32.84992 -31.36316 -30.53156 -29.44717 -26.51530 -25.82678 -25.54226 -25.20415 -22.67759 -22.34070 -21.45836 -19.70396 -18.10558 -17.56872 -16.46774 -16.26946 -16.08005 -15.72408 -15.66335 -15.52493 -15.10513 -14.65115 -14.11096 -13.91706 -13.75528 -13.30037 -12.94678 -12.56091 -12.50829 -12.35248 -12.17799 -11.87725 -11.66122 -11.60126 -11.44526 -11.31533 -11.06534 -10.87923 -10.79357 -10.68760 -10.36735 -10.25898 -10.20118 -10.15593 -9.29090 -9.12836 -8.79805 -8.52555 -8.41433 -7.59370 -6.08503 -4.16476 1.17340 1.21448 3.23360 3.26879 3.31921 3.34662 3.57790 3.86369 4.23103 4.37876 4.52896 4.64970 4.68587 4.83101 4.87668 4.99412 5.13924 5.22616 5.25058 5.35906 5.50581 5.67759 5.74074 5.82670 5.85442 5.89670 6.04849 6.07888 6.08638 6.17402 6.18689 6.33779 6.40644 6.45506 6.54721 6.75073 6.83286 6.90366 7.05815 7.41392 7.51711 7.70658 8.00506 8.18492 8.51759 8.81001 9.02319 9.50037 10.96750 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012776 B = 0.005786 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.007928 B = 4838.514353 C = 6068.084143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.077 3.923 14 C 0.534 3.466 15 O -0.547 6.547 16 C -0.069 4.069 17 C -0.024 4.024 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.159 4.159 21 C 0.096 3.904 22 F -0.143 7.143 23 C -0.153 4.153 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.111 4.111 27 H 0.029 0.971 28 H 0.011 0.989 29 H 0.093 0.907 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -7.689 13.311 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.067 4.067 14 C 0.319 3.681 15 O -0.426 6.426 16 C -0.073 4.073 17 C -0.025 4.025 18 C -0.130 4.130 19 C -0.103 4.103 20 C -0.178 4.178 21 C 0.077 3.923 22 F -0.122 7.122 23 C -0.171 4.171 24 C -0.173 4.173 25 C -0.176 4.176 26 C -0.149 4.149 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.219 -6.992 13.059 16.065 hybrid contribution 0.267 -0.941 -0.988 1.391 sum 6.486 -7.934 12.071 15.834 Atomic orbital electron populations 1.22078 0.98188 0.99380 1.00783 1.18956 0.90949 0.94410 0.79800 0.91964 1.21276 1.31877 1.13033 0.90258 0.92313 1.24874 0.94926 0.94962 0.98893 1.69873 1.36279 1.22539 1.23858 0.86577 0.79256 0.79634 0.82067 1.20228 1.21136 1.20247 1.48122 1.48410 1.11557 1.23110 1.21831 0.99086 0.83472 1.02329 1.19433 0.79252 0.86856 0.82513 1.90638 1.61461 1.15235 1.75251 1.21063 0.95424 0.96127 0.94659 1.19202 0.94640 0.92551 0.96106 1.21178 0.93734 1.00834 0.97270 1.20994 0.98942 0.92064 0.98283 1.21112 0.98453 0.97507 1.00699 1.17598 0.96914 0.78512 0.99311 1.91483 1.96132 1.34955 1.89595 1.21023 0.99874 0.92621 1.03630 1.23223 0.99084 0.97945 0.96999 1.22799 0.97606 0.97443 0.99768 1.22879 0.97068 1.00425 0.94519 0.95192 0.97030 0.88843 0.92622 0.93900 0.90153 0.92235 0.85057 0.84947 0.85007 0.84332 0.89045 0.90095 0.89783 0.91128 0.89526 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.57 2.63 -69.08 -0.18 6.39 16 3 H 0.06 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -14.12 7.95 -34.45 -0.27 -14.39 16 5 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.58 -12.31 2.75 -175.26 -0.48 -12.80 16 13 C 0.08 1.33 8.01 59.85 0.48 1.81 16 14 C 0.53 10.80 5.96 -10.98 -0.07 10.74 16 15 O -0.55 -13.08 15.33 5.56 0.09 -13.00 16 16 C -0.07 -1.05 0.49 -155.86 -0.08 -1.12 16 17 C -0.02 -0.35 3.87 -104.63 -0.40 -0.76 16 18 C -0.11 -1.65 9.35 -39.58 -0.37 -2.02 16 19 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 20 C -0.16 -1.93 10.03 -39.51 -0.40 -2.32 16 21 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 22 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 23 C -0.15 -1.96 7.57 -39.52 -0.30 -2.26 16 24 C -0.14 -1.66 5.70 -25.92 -0.15 -1.81 16 25 C -0.14 -1.69 7.80 -25.92 -0.20 -1.89 16 26 C -0.11 -1.48 7.11 -25.78 -0.18 -1.66 16 27 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.65 6.87 -51.93 -0.36 0.30 16 32 H 0.08 1.51 7.10 -51.93 -0.37 1.14 16 33 H 0.06 0.92 4.02 -51.93 -0.21 0.71 16 34 H 0.13 2.08 8.00 -52.48 -0.42 1.66 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.14 1.52 5.90 -52.49 -0.31 1.21 16 38 H 0.09 0.91 6.16 -51.93 -0.32 0.59 16 39 H 0.08 1.03 5.84 -51.93 -0.30 0.73 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.30 7.37 -51.93 -0.38 0.92 16 43 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -30.16 341.92 -7.97 -38.13 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.80 Total: 3.96 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.57 Total: -11.28 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.15 Total: -37.15 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.16 -7.97 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339159819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.880 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds