Wall clock time and date at job start Tue Mar 31 2020 09:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47657 * 2 1 4 4 C 1.50701 * 109.47230 * 239.99266 * 2 1 3 5 5 H 1.07999 * 120.00453 * 245.57225 * 4 2 1 6 6 C 1.37876 * 119.99519 * 65.57349 * 4 2 1 7 7 N 1.31517 * 120.00128 * 6.65236 * 6 4 2 8 8 Si 1.86805 * 120.00212 * 186.65594 * 6 4 2 9 9 H 1.48496 * 109.47331 * 94.98477 * 8 6 4 10 10 H 1.48499 * 109.47390 * 214.99140 * 8 6 4 11 11 H 1.48509 * 109.46776 * 334.98921 * 8 6 4 12 12 N 1.46504 * 109.47100 * 120.00006 * 2 1 3 13 13 C 1.46492 * 120.00413 * 59.99430 * 12 2 1 14 14 C 1.34781 * 119.99804 * 240.00214 * 12 2 1 15 15 O 1.21284 * 119.99689 * 4.94087 * 14 12 2 16 16 C 1.50698 * 119.99977 * 184.94710 * 14 12 2 17 17 C 1.50698 * 112.84767 * 284.66317 * 16 14 12 18 18 C 1.38243 * 119.97437 * 120.68893 * 17 16 14 19 19 C 1.38202 * 120.02654 * 179.76690 * 18 17 16 20 20 C 1.38456 * 119.97054 * 0.50509 * 19 18 17 21 21 F 1.35106 * 120.02514 * 179.76977 * 20 19 18 22 22 C 1.38454 * 119.94976 * 359.74646 * 20 19 18 23 23 C 1.38193 * 119.97721 * 0.02562 * 22 20 19 24 24 C 1.53784 * 113.61537 * 153.35779 * 16 14 12 25 25 C 1.53787 * 87.08154 * 270.88345 * 24 16 14 26 26 C 1.53781 * 113.61639 * 55.85925 * 16 14 12 27 27 H 1.08996 * 109.47013 * 293.99392 * 1 2 3 28 28 H 1.08998 * 109.46985 * 53.98967 * 1 2 3 29 29 H 1.08998 * 109.47177 * 173.99631 * 1 2 3 30 30 H 0.97006 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47087 * 87.23704 * 13 12 2 32 32 H 1.08994 * 109.47713 * 207.23872 * 13 12 2 33 33 H 1.09007 * 109.47180 * 327.23949 * 13 12 2 34 34 H 1.08004 * 119.98994 * 0.02562 * 18 17 16 35 35 H 1.08001 * 120.01285 * 180.25658 * 19 18 17 36 36 H 1.08003 * 120.01024 * 180.02562 * 22 20 19 37 37 H 1.08007 * 119.98891 * 180.02562 * 23 22 20 38 38 H 1.09000 * 113.61608 * 25.42725 * 24 16 14 39 39 H 1.08997 * 113.61517 * 156.33924 * 24 16 14 40 40 H 1.09003 * 113.61363 * 220.02309 * 25 24 16 41 41 H 1.08998 * 113.69004 * 89.12672 * 25 24 16 42 42 H 1.08992 * 113.61604 * 203.66797 * 26 16 14 43 43 H 1.09000 * 113.61157 * 334.48476 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5770 -1.6381 -1.1338 6 6 1.7966 -0.1764 -2.4794 7 7 1.2503 1.0145 -2.5929 8 14 2.2530 -1.1443 -4.0106 9 1 1.0654 -1.8921 -4.4958 10 1 2.7152 -0.2094 -5.0677 11 1 3.3414 -2.1009 -3.6853 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0356 2.0834 15 8 3.0124 1.1485 1.9388 16 6 3.3872 -0.7744 3.2548 17 6 2.3777 -1.0673 4.3347 18 6 2.1251 -2.3742 4.7080 19 6 1.2031 -2.6437 5.7016 20 6 0.5245 -1.6049 6.3158 21 9 -0.3805 -1.8674 7.2840 22 6 0.7745 -0.2967 5.9374 23 6 1.7003 -0.0293 4.9470 24 6 4.6905 -0.1499 3.7804 25 6 5.4327 -1.0433 2.7723 26 6 4.2283 -1.9965 2.8501 27 1 -0.3633 0.4179 0.9388 28 1 -0.3633 0.6042 -0.8313 29 1 -0.3633 -1.0220 -0.1075 30 1 1.0848 1.3905 -3.4717 31 1 2.3887 -2.7378 0.9302 32 1 1.6717 -2.2975 2.4987 33 1 0.6693 -2.2877 1.0280 34 1 2.6517 -3.1847 4.2260 35 1 1.0090 -3.6646 5.9959 36 1 0.2460 0.5145 6.4162 37 1 1.8958 0.9912 4.6520 38 1 4.7807 0.9155 3.5685 39 1 4.9037 -0.3952 4.8207 40 1 6.3548 -1.4719 3.1650 41 1 5.5631 -0.5835 1.7927 42 1 4.3151 -2.7465 3.6361 43 1 3.9443 -2.4227 1.8879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340999430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:47 Heat of formation + Delta-G solvation = -30.147037 kcal Electronic energy + Delta-G solvation = -25972.803226 eV Core-core repulsion = 22319.342068 eV Total energy + Delta-G solvation = -3653.461158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.95102 -40.96853 -38.48208 -37.00129 -35.31639 -32.79862 -31.27306 -30.94902 -29.50639 -26.50032 -25.66747 -25.52983 -25.15683 -22.98789 -22.20263 -21.54575 -19.68162 -17.94976 -17.84925 -16.79055 -16.31961 -16.18963 -15.70499 -15.63117 -15.42825 -14.89609 -14.54971 -14.07491 -13.82781 -13.67632 -13.37489 -13.08564 -12.80738 -12.60220 -12.44934 -12.17363 -12.10449 -11.79962 -11.59663 -11.44710 -11.11878 -11.04164 -10.86764 -10.78125 -10.67493 -10.40291 -10.28685 -10.20321 -10.10284 -9.22028 -9.16945 -9.11589 -8.46024 -8.38214 -7.59908 -6.09556 -4.15237 1.04524 1.15363 3.25045 3.26652 3.33173 3.35320 3.48345 3.87462 4.18199 4.38223 4.51038 4.68205 4.71717 4.76503 4.82865 4.93116 5.03627 5.20520 5.23220 5.35590 5.53452 5.68787 5.75738 5.81941 5.84257 5.93753 5.98159 6.03927 6.08834 6.14632 6.18520 6.25733 6.34284 6.48021 6.50225 6.71382 6.75096 6.80378 6.99302 7.36272 7.52586 7.68815 7.91890 8.15453 8.51809 8.83120 9.03240 9.50542 10.97900 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.004415 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.333471 B = 6340.416878 C = 6893.284883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.257 3.743 3 H 0.069 0.931 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.079 3.921 14 C 0.534 3.466 15 O -0.547 6.547 16 C -0.068 4.068 17 C -0.063 4.063 18 C -0.089 4.089 19 C -0.152 4.152 20 C 0.090 3.910 21 F -0.144 7.144 22 C -0.149 4.149 23 C -0.078 4.078 24 C -0.112 4.112 25 C -0.140 4.140 26 C -0.136 4.136 27 H 0.015 0.985 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -7.866 15.762 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.157 3.843 3 H 0.087 0.913 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.065 4.065 14 C 0.320 3.680 15 O -0.425 6.425 16 C -0.071 4.071 17 C -0.063 4.063 18 C -0.107 4.107 19 C -0.171 4.171 20 C 0.070 3.930 21 F -0.122 7.122 22 C -0.168 4.168 23 C -0.096 4.096 24 C -0.150 4.150 25 C -0.177 4.177 26 C -0.173 4.173 27 H 0.034 0.966 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.491 -7.113 15.537 17.268 hybrid contribution -0.159 -0.676 -0.785 1.048 sum 2.331 -7.789 14.752 16.844 Atomic orbital electron populations 1.22015 0.98598 0.99905 0.99379 1.18968 0.90523 0.94915 0.79931 0.91349 1.21273 1.36496 1.08452 0.90359 0.92254 1.24898 0.95105 0.94670 0.98949 1.69957 1.43347 1.15004 1.23998 0.86532 0.78615 0.79837 0.82715 1.20641 1.21156 1.19897 1.48114 1.48445 1.11616 1.23220 1.21820 1.01203 0.83414 1.00061 1.19475 0.79123 0.86899 0.82537 1.90644 1.61151 1.15282 1.75449 1.20975 0.93523 0.99073 0.93562 1.19511 0.97131 0.93207 0.96470 1.20972 0.97140 0.96442 0.96112 1.21080 0.98633 0.98812 0.98567 1.17724 0.91268 0.94124 0.89835 1.91485 1.65109 1.94863 1.60789 1.21124 1.00608 0.95211 0.99837 1.20980 0.94207 1.00135 0.94271 1.22845 0.92243 1.01181 0.98733 1.22809 0.96964 0.97510 1.00417 1.23242 0.95645 0.95645 1.02811 0.96630 0.90548 0.94756 0.92705 0.93131 0.92112 0.91338 0.84421 0.84752 0.84776 0.84675 0.89701 0.89739 0.91195 0.89583 0.89229 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.80 37.16 0.33 -2.99 16 2 C 0.26 6.48 2.50 -69.08 -0.17 6.30 16 3 H 0.07 2.02 6.88 -51.93 -0.36 1.67 16 4 C -0.53 -14.03 8.34 -34.44 -0.29 -14.32 16 5 H 0.06 1.55 7.44 -52.49 -0.39 1.16 16 6 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 7 N -0.89 -25.17 12.07 55.43 0.67 -24.50 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.58 -12.21 2.75 -175.26 -0.48 -12.70 16 13 C 0.08 1.32 8.18 59.84 0.49 1.81 16 14 C 0.53 10.75 6.06 -10.98 -0.07 10.68 16 15 O -0.55 -13.14 15.44 5.55 0.09 -13.05 16 16 C -0.07 -1.00 0.46 -156.00 -0.07 -1.07 16 17 C -0.06 -0.82 4.05 -104.62 -0.42 -1.25 16 18 C -0.09 -0.97 7.35 -39.59 -0.29 -1.27 16 19 C -0.15 -1.62 10.03 -39.51 -0.40 -2.02 16 20 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 21 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 22 C -0.15 -1.81 10.03 -39.52 -0.40 -2.20 16 23 C -0.08 -1.05 9.42 -39.60 -0.37 -1.42 16 24 C -0.11 -1.51 7.11 -25.91 -0.18 -1.69 16 25 C -0.14 -1.80 7.80 -25.91 -0.20 -2.01 16 26 C -0.14 -1.69 5.58 -25.92 -0.14 -1.84 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 1.96 6.94 -51.93 -0.36 1.60 16 29 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 0.81 6.76 -51.93 -0.35 0.46 16 32 H 0.06 0.85 3.68 -51.93 -0.19 0.66 16 33 H 0.07 1.17 6.57 -51.92 -0.34 0.83 16 34 H 0.14 1.23 6.00 -52.48 -0.31 0.91 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 38 H 0.08 1.30 7.40 -51.93 -0.38 0.91 16 39 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 0.86 6.43 -51.93 -0.33 0.52 16 43 H 0.08 1.15 5.66 -51.93 -0.29 0.86 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -30.54 342.35 -7.90 -38.44 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.77 Total: 3.36 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.57 Total: -10.77 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.19 Total: -37.20 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.54 -7.90 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340999430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.289 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds