Wall clock time and date at job start Tue Mar 31 2020 09:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47657 * 2 1 4 4 C 1.50701 * 109.47230 * 239.99266 * 2 1 3 5 5 H 1.07999 * 120.00453 * 245.57225 * 4 2 1 6 6 C 1.37876 * 119.99519 * 65.57349 * 4 2 1 7 7 N 1.31517 * 120.00128 * 6.65236 * 6 4 2 8 8 Si 1.86805 * 120.00212 * 186.65594 * 6 4 2 9 9 H 1.48496 * 109.47331 * 94.98477 * 8 6 4 10 10 H 1.48499 * 109.47390 * 214.99140 * 8 6 4 11 11 H 1.48509 * 109.46776 * 334.98921 * 8 6 4 12 12 N 1.46504 * 109.47100 * 120.00006 * 2 1 3 13 13 C 1.46492 * 120.00413 * 59.99430 * 12 2 1 14 14 C 1.34781 * 119.99804 * 240.00214 * 12 2 1 15 15 O 1.21284 * 119.99689 * 4.94087 * 14 12 2 16 16 C 1.50698 * 119.99977 * 184.94710 * 14 12 2 17 17 C 1.50698 * 112.84767 * 284.66317 * 16 14 12 18 18 C 1.38243 * 119.97437 * 120.68893 * 17 16 14 19 19 C 1.38202 * 120.02654 * 179.76690 * 18 17 16 20 20 C 1.38456 * 119.97054 * 0.50509 * 19 18 17 21 21 F 1.35106 * 120.02514 * 179.76977 * 20 19 18 22 22 C 1.38454 * 119.94976 * 359.74646 * 20 19 18 23 23 C 1.38193 * 119.97721 * 0.02562 * 22 20 19 24 24 C 1.53784 * 113.61537 * 153.35779 * 16 14 12 25 25 C 1.53787 * 87.08154 * 270.88345 * 24 16 14 26 26 C 1.53781 * 113.61639 * 55.85925 * 16 14 12 27 27 H 1.08996 * 109.47013 * 293.99392 * 1 2 3 28 28 H 1.08998 * 109.46985 * 53.98967 * 1 2 3 29 29 H 1.08998 * 109.47177 * 173.99631 * 1 2 3 30 30 H 0.97006 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47087 * 87.23704 * 13 12 2 32 32 H 1.08994 * 109.47713 * 207.23872 * 13 12 2 33 33 H 1.09007 * 109.47180 * 327.23949 * 13 12 2 34 34 H 1.08004 * 119.98994 * 0.02562 * 18 17 16 35 35 H 1.08001 * 120.01285 * 180.25658 * 19 18 17 36 36 H 1.08003 * 120.01024 * 180.02562 * 22 20 19 37 37 H 1.08007 * 119.98891 * 180.02562 * 23 22 20 38 38 H 1.09000 * 113.61608 * 25.42725 * 24 16 14 39 39 H 1.08997 * 113.61517 * 156.33924 * 24 16 14 40 40 H 1.09003 * 113.61363 * 220.02309 * 25 24 16 41 41 H 1.08998 * 113.69004 * 89.12672 * 25 24 16 42 42 H 1.08992 * 113.61604 * 203.66797 * 26 16 14 43 43 H 1.09000 * 113.61157 * 334.48476 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.5770 -1.6381 -1.1338 6 6 1.7966 -0.1764 -2.4794 7 7 1.2503 1.0145 -2.5929 8 14 2.2530 -1.1443 -4.0106 9 1 1.0654 -1.8921 -4.4958 10 1 2.7152 -0.2094 -5.0677 11 1 3.3414 -2.1009 -3.6853 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0356 2.0834 15 8 3.0124 1.1485 1.9388 16 6 3.3872 -0.7744 3.2548 17 6 2.3777 -1.0673 4.3347 18 6 2.1251 -2.3742 4.7080 19 6 1.2031 -2.6437 5.7016 20 6 0.5245 -1.6049 6.3158 21 9 -0.3805 -1.8674 7.2840 22 6 0.7745 -0.2967 5.9374 23 6 1.7003 -0.0293 4.9470 24 6 4.6905 -0.1499 3.7804 25 6 5.4327 -1.0433 2.7723 26 6 4.2283 -1.9965 2.8501 27 1 -0.3633 0.4179 0.9388 28 1 -0.3633 0.6042 -0.8313 29 1 -0.3633 -1.0220 -0.1075 30 1 1.0848 1.3905 -3.4717 31 1 2.3887 -2.7378 0.9302 32 1 1.6717 -2.2975 2.4987 33 1 0.6693 -2.2877 1.0280 34 1 2.6517 -3.1847 4.2260 35 1 1.0090 -3.6646 5.9959 36 1 0.2460 0.5145 6.4162 37 1 1.8958 0.9912 4.6520 38 1 4.7807 0.9155 3.5685 39 1 4.9037 -0.3952 4.8207 40 1 6.3548 -1.4719 3.1650 41 1 5.5631 -0.5835 1.7927 42 1 4.3151 -2.7465 3.6361 43 1 3.9443 -2.4227 1.8879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340999430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:47 Heat of formation + Delta-G solvation = -46.650041 kcal Electronic energy + Delta-G solvation = -25973.518850 eV Core-core repulsion = 22319.342068 eV Total energy + Delta-G solvation = -3654.176782 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.87852 -42.19928 -39.70787 -38.26997 -37.08041 -34.73664 -32.18782 -32.08134 -31.26209 -27.87270 -27.30835 -26.84010 -26.61209 -24.04454 -23.50698 -22.68157 -21.23090 -19.35279 -18.80542 -18.43383 -17.82793 -17.37949 -17.18774 -16.72961 -16.57728 -16.38490 -15.94576 -15.34441 -15.28528 -14.59717 -14.50747 -14.42138 -14.33519 -13.99931 -13.73834 -13.63569 -13.41986 -13.13260 -12.92618 -12.87272 -12.81792 -12.64121 -12.55448 -12.28143 -12.09911 -12.03244 -11.81119 -11.43475 -11.25543 -11.15622 -10.65390 -10.51082 -10.06611 -9.47541 -9.32589 -8.16466 -6.30786 0.09092 0.25526 1.41745 1.42264 1.52903 1.75628 2.27912 2.46199 2.57916 3.13248 3.26989 3.45247 3.62580 3.64473 3.71532 3.83859 3.94799 3.97475 4.30573 4.39398 4.42985 4.51184 4.66768 4.73181 4.77809 4.80802 4.82604 4.94110 4.96969 4.98314 4.99925 5.06337 5.13553 5.15807 5.17564 5.26192 5.43924 5.46060 5.51685 5.57747 5.67629 5.89757 5.97870 6.12304 6.77852 6.83129 7.31617 7.47719 8.90603 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.004415 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.333471 B = 6340.416878 C = 6893.284883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.260 3.740 3 H 0.011 0.989 4 C -0.535 4.535 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.592 5.592 13 C 0.076 3.924 14 C 0.524 3.476 15 O -0.602 6.602 16 C -0.066 4.066 17 C -0.073 4.073 18 C -0.080 4.080 19 C -0.140 4.140 20 C 0.082 3.918 21 F -0.146 7.146 22 C -0.153 4.153 23 C -0.096 4.096 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.122 4.122 27 H 0.021 0.979 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.052 0.948 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.135 0.865 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -12.002 17.181 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.158 3.842 3 H 0.029 0.971 4 C -0.574 4.574 5 H 0.083 0.917 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.321 5.321 13 C -0.066 4.066 14 C 0.313 3.687 15 O -0.484 6.484 16 C -0.070 4.070 17 C -0.074 4.074 18 C -0.097 4.097 19 C -0.158 4.158 20 C 0.063 3.937 21 F -0.125 7.125 22 C -0.172 4.172 23 C -0.114 4.114 24 C -0.148 4.148 25 C -0.178 4.178 26 C -0.159 4.159 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.188 0.812 35 H 0.184 0.816 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.153 0.847 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.014 -11.290 16.980 20.613 hybrid contribution -0.342 0.696 -1.153 1.389 sum 2.672 -10.594 15.828 19.232 Atomic orbital electron populations 1.21802 0.97562 1.00426 0.98588 1.18545 0.91260 0.92497 0.81874 0.97148 1.21547 1.36336 1.08499 0.91005 0.91691 1.25779 0.95063 0.95459 1.02223 1.70112 1.44607 1.16679 1.24640 0.85452 0.78781 0.78370 0.78487 1.19479 1.21492 1.18849 1.48101 1.48633 1.13287 1.22079 1.22065 1.01320 0.80828 1.02360 1.20491 0.78154 0.86578 0.83496 1.90608 1.62790 1.18037 1.76950 1.20822 0.94286 1.00122 0.91722 1.19448 0.97256 0.94327 0.96341 1.21235 0.96861 0.95801 0.95809 1.21414 0.97205 0.99839 0.97349 1.17910 0.91479 0.94375 0.89984 1.91483 1.65266 1.94827 1.60932 1.21197 1.00327 0.96135 0.99531 1.20895 0.95537 0.99537 0.95469 1.22912 0.91787 0.99464 1.00632 1.22768 0.98970 0.97536 0.98509 1.23331 0.93610 0.95199 1.03759 0.95961 0.93175 0.92927 0.92759 0.91823 0.88937 0.91593 0.81244 0.81627 0.83984 0.86943 0.92895 0.86488 0.87848 0.93280 0.84673 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.80 71.98 0.63 -5.46 16 2 C 0.26 13.70 2.50 44.24 0.11 13.81 16 3 H 0.01 0.67 6.88 -2.39 -0.02 0.65 16 4 C -0.54 -28.98 8.34 25.60 0.21 -28.77 16 5 H 0.06 3.36 7.44 -2.91 -0.02 3.34 16 6 C 0.01 0.79 5.27 84.65 0.45 1.24 16 7 N -0.92 -54.35 12.07 21.45 0.26 -54.09 16 8 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.59 -25.14 2.75 -826.79 -2.27 -27.41 16 13 C 0.08 2.40 8.18 127.77 1.05 3.44 16 14 C 0.52 21.86 6.06 87.66 0.53 22.39 16 15 O -0.60 -31.29 15.44 -3.04 -0.05 -31.33 16 16 C -0.07 -1.88 0.46 -53.15 -0.02 -1.91 16 17 C -0.07 -1.76 4.05 -19.86 -0.08 -1.85 16 18 C -0.08 -1.37 7.35 22.26 0.16 -1.20 16 19 C -0.14 -2.33 10.03 22.31 0.22 -2.10 16 20 C 0.08 1.73 7.30 22.37 0.16 1.89 16 21 F -0.15 -3.24 17.27 44.97 0.78 -2.47 16 22 C -0.15 -3.55 10.03 22.31 0.22 -3.33 16 23 C -0.10 -2.56 9.42 22.26 0.21 -2.35 16 24 C -0.11 -2.87 7.11 31.12 0.22 -2.65 16 25 C -0.14 -3.40 7.80 31.12 0.24 -3.16 16 26 C -0.12 -2.61 5.58 31.12 0.17 -2.44 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 2.68 6.94 -2.39 -0.02 2.66 16 29 H 0.05 2.31 6.94 -2.39 -0.02 2.29 16 30 H 0.26 14.72 8.31 -92.70 -0.77 13.94 16 31 H 0.06 1.85 6.76 -2.38 -0.02 1.83 16 32 H 0.09 2.27 3.68 -2.39 -0.01 2.26 16 33 H 0.07 2.11 6.57 -2.38 -0.02 2.09 16 34 H 0.17 1.84 6.00 -2.91 -0.02 1.82 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.05 1.71 7.40 -2.39 -0.02 1.70 16 39 H 0.12 2.28 8.10 -2.39 -0.02 2.26 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.14 1.71 6.43 -2.39 -0.02 1.69 16 43 H 0.08 1.81 5.66 -2.39 -0.01 1.80 16 Total: -1.00 -71.89 342.35 6.27 -65.62 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.03 Total: 17.21 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.50 Total: -12.43 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.01 Total: -81.50 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -71.89 6.27 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340999430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.971 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds