Wall clock time and date at job start Tue Mar 31 2020 08:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00130 * 2 1 4 4 N 1.46495 * 109.47252 * 125.00112 * 3 2 1 5 5 C 1.36733 * 127.14177 * 84.29039 * 4 3 2 6 6 C 1.50700 * 126.34481 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47010 * 269.71096 * 6 5 4 8 8 C 1.50700 * 109.47010 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00395 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99486 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00411 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46994 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47348 * 119.99555 * 12 10 8 15 15 H 1.48497 * 109.47229 * 239.99951 * 12 10 8 16 16 N 1.30291 * 107.30749 * 179.73336 * 5 4 3 17 17 N 1.28528 * 110.05275 * 0.26605 * 16 5 4 18 18 C 1.31214 * 109.86265 * 359.97438 * 17 16 5 19 19 N 1.38579 * 126.47550 * 180.02562 * 18 17 16 20 20 C 1.47184 * 111.00272 * 259.35837 * 19 18 17 21 21 C 1.52985 * 108.72989 * 54.36759 * 20 19 18 22 22 N 1.46017 * 110.04175 * 50.29136 * 21 20 19 23 23 C 1.33722 * 122.92401 * 341.84172 * 22 21 20 24 24 O 1.21277 * 118.61863 * 181.68528 * 23 22 21 25 25 C 1.46903 * 111.00161 * 22.25400 * 19 18 17 26 26 H 1.07994 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99604 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99743 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47030 * 4.99171 * 3 2 1 30 30 H 1.09006 * 109.46684 * 245.00098 * 3 2 1 31 31 H 1.08997 * 109.47312 * 149.71244 * 6 5 4 32 32 H 1.09001 * 109.47428 * 29.71203 * 6 5 4 33 33 H 1.09007 * 109.46989 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47113 * 300.00300 * 7 6 5 35 35 H 0.97000 * 120.00015 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.59851 * 174.13816 * 20 19 18 37 37 H 1.08997 * 109.59346 * 294.59610 * 20 19 18 38 38 H 1.08993 * 109.37738 * 170.46918 * 21 20 19 39 39 H 1.09001 * 109.37626 * 290.23695 * 21 20 19 40 40 H 0.96999 * 118.53242 * 161.86229 * 22 21 20 41 41 H 1.09000 * 109.38888 * 47.08422 * 25 19 18 42 42 H 1.08997 * 109.39036 * 166.77534 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2543 0.8039 1.1765 6 6 4.9580 0.0756 0.0604 7 6 4.6612 -1.4219 0.1619 8 6 5.3644 -2.1501 -0.9545 9 1 5.9628 -1.5999 -1.6655 10 6 5.2430 -3.5188 -1.0687 11 7 4.5140 -4.1888 -0.2032 12 14 6.1152 -4.4216 -2.4521 13 1 6.8656 -3.4465 -3.2836 14 1 7.0596 -5.4133 -1.8779 15 1 5.1133 -5.1224 -3.2948 16 7 4.7361 1.0516 2.3614 17 7 3.8704 1.6904 3.0645 18 6 2.7810 1.8866 2.3598 19 7 1.6334 2.5389 2.7816 20 6 0.5890 1.5749 3.1639 21 6 1.1649 0.6143 4.2061 22 7 1.8064 1.3672 5.2802 23 6 2.1720 2.6471 5.1527 24 8 2.7275 3.1882 6.0852 25 6 1.9234 3.4429 3.9026 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0894 30 1 2.6214 1.4025 -0.9315 31 1 6.0326 0.2393 0.1406 32 1 4.6038 0.4520 -0.8992 33 1 3.5865 -1.5856 0.0817 34 1 5.0155 -1.7983 1.1216 35 1 4.4289 -5.1518 -0.2833 36 1 -0.2621 2.1072 3.5885 37 1 0.2707 1.0133 2.2857 38 1 0.3609 0.0063 4.6208 39 1 1.9012 -0.0346 3.7319 40 1 1.9750 0.9188 6.1236 41 1 2.8077 4.0361 3.6697 42 1 1.0745 4.1081 4.0600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355948137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:42 Heat of formation + Delta-G solvation = 76.988546 kcal Electronic energy + Delta-G solvation = -25977.407590 eV Core-core repulsion = 22380.804891 eV Total energy + Delta-G solvation = -3596.602698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.86579 -40.46224 -37.49331 -36.17329 -34.60812 -33.97711 -32.66444 -31.74913 -30.13233 -28.92918 -26.96233 -26.15546 -25.36368 -23.75578 -21.97603 -21.49683 -20.78792 -19.57541 -19.40562 -17.71805 -16.99801 -16.87106 -16.40499 -16.08646 -15.79452 -15.29532 -15.09855 -14.74360 -14.46583 -14.00622 -13.75475 -13.51981 -13.23789 -13.09286 -12.73863 -12.62581 -12.35982 -12.08430 -11.79353 -11.52153 -11.42945 -11.20632 -11.05943 -10.88563 -10.71270 -10.22934 -10.00056 -9.92099 -9.86347 -9.62327 -9.29036 -9.19688 -9.13914 -8.47219 -8.21662 -6.12520 -4.16112 1.80215 2.03258 2.49431 2.61730 3.07693 3.21604 3.24236 3.32901 3.36168 3.63152 4.24827 4.35840 4.47980 4.54201 4.64331 4.75886 4.85939 4.95092 5.02770 5.14756 5.24366 5.26036 5.29763 5.35254 5.37573 5.50138 5.62672 5.78510 6.02804 6.24436 6.26708 6.37823 6.51303 6.53216 6.59927 6.68485 6.80517 7.20177 7.27672 7.49545 7.61200 7.85085 8.13353 8.22631 8.89861 9.07937 9.48965 10.98498 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003994 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.494196 B = 7008.151330 C = 7393.662512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.173 4.173 3 C 0.139 3.861 4 N -0.464 5.464 5 C 0.219 3.781 6 C -0.033 4.033 7 C 0.032 3.968 8 C -0.523 4.523 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 N -0.293 5.293 17 N -0.307 5.307 18 C 0.314 3.686 19 N -0.445 5.445 20 C 0.035 3.965 21 C 0.079 3.921 22 N -0.713 5.713 23 C 0.510 3.490 24 O -0.551 6.551 25 C 0.058 3.942 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.120 0.880 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 11.680 2.263 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.192 4.192 3 C 0.016 3.984 4 N -0.158 5.158 5 C -0.048 4.048 6 C -0.073 4.073 7 C -0.006 4.006 8 C -0.562 4.562 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.210 1.210 16 N -0.132 5.132 17 N -0.151 5.151 18 C -0.042 4.042 19 N -0.169 5.169 20 C -0.092 4.092 21 C -0.048 4.048 22 N -0.366 5.366 23 C 0.296 3.704 24 O -0.428 6.428 25 C -0.072 4.072 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.138 0.862 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.957 12.268 3.339 18.153 hybrid contribution -0.254 -1.490 -1.022 1.825 sum -13.210 10.778 2.317 17.206 Atomic orbital electron populations 1.23907 0.95468 1.02208 0.99739 1.23505 0.96509 0.99040 1.00106 1.20959 0.91879 0.97387 0.88154 1.46231 1.14271 1.43833 1.11434 1.25663 0.82535 0.98075 0.98488 1.20481 0.99083 0.97680 0.90036 1.19123 0.97089 0.86181 0.98196 1.21174 1.30600 0.92215 1.12178 0.92239 1.24987 0.95263 0.97676 0.96194 1.69966 1.39588 1.07735 1.35821 0.86519 0.79521 0.79851 0.82030 1.19599 1.20912 1.21031 1.74079 1.23068 1.14580 1.01516 1.74611 0.99488 1.16456 1.24557 1.22226 0.95093 1.01869 0.84992 1.59148 1.04588 1.17695 1.35447 1.22837 0.93667 0.93574 0.99153 1.22002 0.98156 0.95145 0.89449 1.45351 1.61992 1.12053 1.17206 1.20606 0.77373 0.82439 0.90009 1.90746 1.41967 1.69127 1.40915 1.22331 1.05673 0.94617 0.84583 0.88406 0.87631 0.84923 0.88101 0.87687 0.89218 0.91131 0.96446 0.95741 0.92923 0.88069 0.87684 0.89505 0.91252 0.76267 0.86239 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 12.84 29.01 0.37 -1.24 16 2 C -0.17 -2.09 9.41 -36.03 -0.34 -2.43 16 3 C 0.14 1.61 6.41 -5.20 -0.03 1.58 16 4 N -0.46 -7.08 2.79 -115.37 -0.32 -7.40 16 5 C 0.22 4.11 7.32 -154.02 -1.13 2.98 16 6 C -0.03 -0.64 5.53 -27.88 -0.15 -0.79 16 7 C 0.03 0.77 4.95 -27.88 -0.14 0.63 16 8 C -0.52 -13.73 9.11 -34.44 -0.31 -14.04 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 12 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 N -0.29 -6.16 12.18 32.99 0.40 -5.76 16 17 N -0.31 -5.84 10.34 30.31 0.31 -5.53 16 18 C 0.31 4.81 5.26 -318.87 -1.68 3.14 16 19 N -0.44 -5.06 5.03 -175.92 -0.88 -5.95 16 20 C 0.04 0.31 6.02 -3.68 -0.02 0.29 16 21 C 0.08 0.83 6.59 -4.31 -0.03 0.80 16 22 N -0.71 -8.79 5.42 -61.06 -0.33 -9.12 16 23 C 0.51 7.25 6.51 -11.67 -0.08 7.17 16 24 O -0.55 -9.92 17.82 5.56 0.10 -9.82 16 25 C 0.06 0.67 5.62 -5.19 -0.03 0.64 16 26 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 27 H 0.11 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.13 2.11 6.01 -52.49 -0.32 1.79 16 29 H 0.10 0.93 7.75 -51.93 -0.40 0.53 16 30 H 0.11 1.16 7.43 -51.93 -0.39 0.77 16 31 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.07 1.21 7.39 -51.93 -0.38 0.82 16 33 H 0.02 0.42 6.09 -51.92 -0.32 0.11 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.11 0.89 6.07 -51.93 -0.32 0.57 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.99 7.40 -51.93 -0.38 0.60 16 40 H 0.40 4.70 8.84 -40.82 -0.36 4.34 16 41 H 0.12 1.52 7.97 -51.93 -0.41 1.11 16 42 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -34.15 346.32 -9.22 -43.37 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.76 Total: 3.84 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -3.67 Total: 0.28 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.09 Total: -58.47 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.10 Total: -9.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.15 -9.22 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355948137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.355 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds