Wall clock time and date at job start Tue Mar 31 2020 08:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00130 * 2 1 4 4 N 1.46495 * 109.47252 * 125.00112 * 3 2 1 5 5 C 1.36733 * 127.14177 * 84.29039 * 4 3 2 6 6 C 1.50700 * 126.34481 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47010 * 269.71096 * 6 5 4 8 8 C 1.50700 * 109.47010 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00395 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99486 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00411 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99740 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46994 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47348 * 119.99555 * 12 10 8 15 15 H 1.48497 * 109.47229 * 239.99951 * 12 10 8 16 16 N 1.30291 * 107.30749 * 179.73336 * 5 4 3 17 17 N 1.28528 * 110.05275 * 0.26605 * 16 5 4 18 18 C 1.31214 * 109.86265 * 359.97438 * 17 16 5 19 19 N 1.38579 * 126.47550 * 180.02562 * 18 17 16 20 20 C 1.47184 * 111.00272 * 259.35837 * 19 18 17 21 21 C 1.52985 * 108.72989 * 54.36759 * 20 19 18 22 22 N 1.46017 * 110.04175 * 50.29136 * 21 20 19 23 23 C 1.33722 * 122.92401 * 341.84172 * 22 21 20 24 24 O 1.21277 * 118.61863 * 181.68528 * 23 22 21 25 25 C 1.46903 * 111.00161 * 22.25400 * 19 18 17 26 26 H 1.07994 * 119.99833 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99604 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99743 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47030 * 4.99171 * 3 2 1 30 30 H 1.09006 * 109.46684 * 245.00098 * 3 2 1 31 31 H 1.08997 * 109.47312 * 149.71244 * 6 5 4 32 32 H 1.09001 * 109.47428 * 29.71203 * 6 5 4 33 33 H 1.09007 * 109.46989 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47113 * 300.00300 * 7 6 5 35 35 H 0.97000 * 120.00015 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.59851 * 174.13816 * 20 19 18 37 37 H 1.08997 * 109.59346 * 294.59610 * 20 19 18 38 38 H 1.08993 * 109.37738 * 170.46918 * 21 20 19 39 39 H 1.09001 * 109.37626 * 290.23695 * 21 20 19 40 40 H 0.96999 * 118.53242 * 161.86229 * 22 21 20 41 41 H 1.09000 * 109.38888 * 47.08422 * 25 19 18 42 42 H 1.08997 * 109.39036 * 166.77534 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2543 0.8039 1.1765 6 6 4.9580 0.0756 0.0604 7 6 4.6612 -1.4219 0.1619 8 6 5.3644 -2.1501 -0.9545 9 1 5.9628 -1.5999 -1.6655 10 6 5.2430 -3.5188 -1.0687 11 7 4.5140 -4.1888 -0.2032 12 14 6.1152 -4.4216 -2.4521 13 1 6.8656 -3.4465 -3.2836 14 1 7.0596 -5.4133 -1.8779 15 1 5.1133 -5.1224 -3.2948 16 7 4.7361 1.0516 2.3614 17 7 3.8704 1.6904 3.0645 18 6 2.7810 1.8866 2.3598 19 7 1.6334 2.5389 2.7816 20 6 0.5890 1.5749 3.1639 21 6 1.1649 0.6143 4.2061 22 7 1.8064 1.3672 5.2802 23 6 2.1720 2.6471 5.1527 24 8 2.7275 3.1882 6.0852 25 6 1.9234 3.4429 3.9026 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0894 30 1 2.6214 1.4025 -0.9315 31 1 6.0326 0.2393 0.1406 32 1 4.6038 0.4520 -0.8992 33 1 3.5865 -1.5856 0.0817 34 1 5.0155 -1.7983 1.1216 35 1 4.4289 -5.1518 -0.2833 36 1 -0.2621 2.1072 3.5885 37 1 0.2707 1.0133 2.2857 38 1 0.3609 0.0063 4.6208 39 1 1.9012 -0.0346 3.7319 40 1 1.9750 0.9188 6.1236 41 1 2.8077 4.0361 3.6697 42 1 1.0745 4.1081 4.0600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355948137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:41 Heat of formation + Delta-G solvation = 52.616435 kcal Electronic energy + Delta-G solvation = -25978.464444 eV Core-core repulsion = 22380.804891 eV Total energy + Delta-G solvation = -3597.659552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.15742 -41.51906 -38.60103 -37.27681 -36.02636 -35.41137 -33.90525 -33.40011 -31.07077 -30.44245 -28.06364 -27.25188 -27.01078 -24.74398 -23.74593 -22.65580 -22.01471 -20.62155 -20.51756 -18.81240 -18.54746 -18.01768 -17.82933 -17.25985 -16.87911 -16.52133 -16.35745 -16.07504 -15.73899 -15.25447 -14.84972 -14.82601 -14.45696 -14.27137 -14.22916 -13.67573 -13.55066 -13.27896 -13.00502 -12.90047 -12.73148 -12.58438 -12.46428 -12.39929 -12.09786 -11.89700 -11.75889 -11.37121 -11.26340 -11.07379 -10.56349 -10.47599 -10.45083 -10.21537 -9.50566 -8.20504 -6.31474 0.66014 0.95328 1.41571 1.43888 1.47339 1.54431 1.55750 1.75578 2.14895 2.41759 2.64337 3.14358 3.35586 3.43061 3.61269 3.71743 3.77117 3.86794 3.98702 4.12117 4.18508 4.25941 4.36861 4.46285 4.51581 4.62222 4.66835 4.73287 4.77620 4.89188 4.95546 5.05231 5.27720 5.40580 5.45521 5.57429 5.67230 5.69850 5.74375 5.83340 6.10128 6.18257 6.19300 6.84061 7.07127 7.38191 7.70876 8.91397 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003994 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.494196 B = 7008.151330 C = 7393.662512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C 0.137 3.863 4 N -0.457 5.457 5 C 0.205 3.795 6 C -0.017 4.017 7 C 0.045 3.955 8 C -0.538 4.538 9 H 0.069 0.931 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.963 3.037 13 H -0.258 1.258 14 H -0.285 1.285 15 H -0.277 1.277 16 N -0.336 5.336 17 N -0.348 5.348 18 C 0.338 3.662 19 N -0.428 5.428 20 C 0.036 3.964 21 C 0.078 3.922 22 N -0.711 5.711 23 C 0.504 3.496 24 O -0.598 6.598 25 C 0.061 3.939 26 H 0.137 0.863 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.008 0.992 34 H -0.023 1.023 35 H 0.262 0.738 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.026 0.974 40 H 0.401 0.599 41 H 0.104 0.896 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 13.127 0.575 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.226 4.226 3 C 0.016 3.984 4 N -0.149 5.149 5 C -0.064 4.064 6 C -0.057 4.057 7 C 0.006 3.994 8 C -0.575 4.575 9 H 0.087 0.913 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.787 3.213 13 H -0.182 1.182 14 H -0.211 1.211 15 H -0.203 1.203 16 N -0.175 5.175 17 N -0.192 5.192 18 C -0.019 4.019 19 N -0.153 5.153 20 C -0.091 4.091 21 C -0.048 4.048 22 N -0.361 5.361 23 C 0.291 3.709 24 O -0.479 6.479 25 C -0.069 4.069 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.027 0.973 34 H -0.004 1.004 35 H 0.071 0.929 36 H 0.165 0.835 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.044 0.956 40 H 0.236 0.764 41 H 0.122 0.878 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.910 13.704 1.613 21.060 hybrid contribution 0.506 -1.965 -0.442 2.077 sum -15.404 11.738 1.172 19.402 Atomic orbital electron populations 1.24184 0.94143 1.04110 0.94862 1.23127 0.97457 0.97281 1.04686 1.21293 0.91816 0.98297 0.86965 1.46361 1.13520 1.42727 1.12319 1.25296 0.84210 0.99123 0.97784 1.20154 0.99037 0.94744 0.91767 1.18876 0.96080 0.89212 0.95187 1.21615 1.30479 0.92824 1.12632 0.91270 1.25893 0.95972 0.98726 0.98678 1.70106 1.41210 1.08024 1.37835 0.85432 0.78352 0.78504 0.78976 1.18183 1.21130 1.20255 1.73952 1.25015 1.15870 1.02688 1.74506 1.00893 1.18233 1.25573 1.22635 0.95285 0.99539 0.84489 1.59401 1.02948 1.17658 1.35250 1.23114 0.93566 0.93213 0.99170 1.22134 0.97830 0.95334 0.89487 1.45449 1.61322 1.11741 1.17638 1.21175 0.76519 0.82889 0.90357 1.90721 1.44183 1.70283 1.42714 1.22462 1.07151 0.94375 0.82866 0.84561 0.87392 0.89832 0.84508 0.87267 0.89866 0.88565 0.97334 1.00434 0.92875 0.83501 0.86618 0.85924 0.95584 0.76364 0.87764 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 12.84 67.78 0.87 -1.13 16 2 C -0.21 -4.72 9.41 25.64 0.24 -4.48 16 3 C 0.14 2.89 6.41 85.63 0.55 3.44 16 4 N -0.46 -13.71 2.79 -518.92 -1.45 -15.15 16 5 C 0.20 7.95 7.32 137.64 1.01 8.96 16 6 C -0.02 -0.69 5.53 29.85 0.17 -0.53 16 7 C 0.04 2.25 4.95 29.85 0.15 2.40 16 8 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 9 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 10 C 0.01 0.30 5.46 84.66 0.46 0.76 16 11 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 12 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 13 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 N -0.34 -14.85 12.18 -49.54 -0.60 -15.46 16 17 N -0.35 -13.66 10.34 -58.00 -0.60 -14.26 16 18 C 0.34 10.08 5.26 260.11 1.37 11.45 16 19 N -0.43 -8.42 5.03 -710.48 -3.57 -11.99 16 20 C 0.04 0.49 6.02 86.24 0.52 1.01 16 21 C 0.08 1.50 6.59 86.47 0.57 2.07 16 22 N -0.71 -16.99 5.42 -466.07 -2.53 -19.52 16 23 C 0.50 13.90 6.51 87.68 0.57 14.47 16 24 O -0.60 -21.82 17.82 -3.02 -0.05 -21.88 16 25 C 0.06 1.25 5.62 85.42 0.48 1.73 16 26 H 0.14 1.03 7.84 -2.91 -0.02 1.00 16 27 H 0.11 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.08 2.80 6.01 -2.91 -0.02 2.78 16 29 H 0.14 1.89 7.75 -2.39 -0.02 1.88 16 30 H 0.11 2.20 7.43 -2.38 -0.02 2.18 16 31 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.10 3.29 7.39 -2.39 -0.02 3.28 16 33 H 0.01 0.44 6.09 -2.38 -0.01 0.43 16 34 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.15 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.12 1.41 6.07 -2.39 -0.01 1.39 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.03 0.75 7.40 -2.39 -0.02 0.73 16 40 H 0.40 9.44 8.84 -92.71 -0.82 8.62 16 41 H 0.10 2.54 7.97 -2.39 -0.02 2.52 16 42 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -81.02 346.32 0.92 -80.10 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.23 Total: 16.68 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.19 Total: 11.53 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -8.47 Total: -131.01 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -81.02 0.92 -80.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355948137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.719 kcal (2) G-P(sol) polarization free energy of solvation -81.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds