Wall clock time and date at job start Tue Mar 31 2020 08:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99860 * 2 1 4 4 C 1.53235 * 109.33928 * 172.74837 * 3 2 1 5 5 N 1.47084 * 108.52409 * 53.82518 * 4 3 2 6 6 S 1.65599 * 120.87878 * 128.79150 * 5 4 3 7 7 O 1.42096 * 106.40516 * 23.57012 * 6 5 4 8 8 O 1.42105 * 106.39934 * 156.48613 * 6 5 4 9 9 N 1.65597 * 107.22205 * 270.02789 * 6 5 4 10 10 C 1.46498 * 120.00261 * 64.99853 * 9 6 5 11 11 C 1.52992 * 109.47253 * 165.00292 * 10 9 6 12 12 C 1.53000 * 109.47119 * 300.00025 * 11 10 9 13 13 C 1.53001 * 109.47399 * 60.00337 * 11 10 9 14 14 C 1.50707 * 109.46967 * 180.02562 * 11 10 9 15 15 H 1.07997 * 119.99722 * 356.89411 * 14 11 10 16 16 C 1.37876 * 119.99678 * 176.90544 * 14 11 10 17 17 N 1.31514 * 120.00382 * 5.72953 * 16 14 11 18 18 Si 1.86805 * 119.99665 * 185.73593 * 16 14 11 19 19 H 1.48502 * 109.46839 * 85.01752 * 18 16 14 20 20 H 1.48495 * 109.47145 * 205.01412 * 18 16 14 21 21 H 1.48497 * 109.47420 * 325.01942 * 18 16 14 22 22 C 1.47079 * 118.23804 * 308.82224 * 5 4 3 23 23 C 1.46907 * 110.99645 * 235.69911 * 2 1 3 24 24 H 1.08997 * 109.46935 * 184.29770 * 1 2 3 25 25 H 1.08991 * 109.47082 * 304.30391 * 1 2 3 26 26 H 1.09001 * 109.46961 * 64.30600 * 1 2 3 27 27 H 1.09002 * 109.49044 * 292.70214 * 3 2 1 28 28 H 1.08998 * 109.49396 * 52.78838 * 3 2 1 29 29 H 1.09004 * 109.62645 * 294.12030 * 4 3 2 30 30 H 1.09001 * 109.63199 * 173.53916 * 4 3 2 31 31 H 0.96999 * 120.00029 * 245.00545 * 9 6 5 32 32 H 1.09000 * 109.47371 * 285.00447 * 10 9 6 33 33 H 1.09000 * 109.46790 * 44.99930 * 10 9 6 34 34 H 1.08994 * 109.47076 * 53.85196 * 12 11 10 35 35 H 1.09002 * 109.47067 * 173.85204 * 12 11 10 36 36 H 1.09000 * 109.47225 * 293.84886 * 12 11 10 37 37 H 1.09000 * 109.47008 * 59.99979 * 13 11 10 38 38 H 1.08999 * 109.47027 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.46676 * 300.00136 * 13 11 10 40 40 H 0.96999 * 119.99802 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.62831 * 291.46985 * 22 5 4 42 42 H 1.09001 * 109.62703 * 170.89047 * 22 5 4 43 43 H 1.09003 * 109.49242 * 307.20703 * 23 2 1 44 44 H 1.08999 * 109.49111 * 67.26753 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3312 0.1825 5 7 4.0870 0.4460 -0.8442 6 16 5.3382 0.9528 -1.8034 7 8 5.9982 1.9881 -1.0882 8 8 5.9978 -0.2217 -2.2561 9 7 4.6724 1.6614 -3.1439 10 6 3.8871 2.8907 -3.0090 11 6 3.7079 3.5350 -4.3850 12 6 5.0798 3.8684 -4.9746 13 6 2.9769 2.5622 -5.3124 14 6 2.9005 4.7999 -4.2460 15 1 2.5077 5.0866 -3.2817 16 6 2.6632 5.5910 -5.3501 17 7 3.0432 5.1870 -6.5425 18 14 1.8020 7.2368 -5.1520 19 1 2.7999 8.2781 -4.7979 20 1 1.1355 7.6033 -6.4274 21 1 0.7863 7.1375 -4.0733 22 6 3.5164 -0.9010 -0.9968 23 6 1.9954 -0.7729 -1.1330 24 1 -0.3633 -1.0248 0.0770 25 1 -0.3633 0.5791 0.8488 26 1 -0.3633 0.4456 -0.9261 27 1 1.7556 1.8531 -0.9479 28 1 1.5457 1.9337 0.8183 29 1 3.7562 0.9450 1.1732 30 1 3.9255 2.3351 0.0689 31 1 4.8023 1.2624 -4.0184 32 1 2.9097 2.6532 -2.5889 33 1 4.4078 3.5837 -2.3482 34 1 5.7027 2.9739 -4.9737 35 1 4.9587 4.2258 -5.9972 36 1 5.5554 4.6429 -4.3729 37 1 1.9995 2.3247 -4.8924 38 1 2.8497 3.0211 -6.2929 39 1 3.5612 1.6475 -5.4128 40 1 2.8765 5.7437 -7.3191 41 1 3.7562 -1.5018 -0.1195 42 1 3.9255 -1.3729 -1.8902 43 1 1.5457 -1.7658 -1.1362 44 1 1.7551 -0.2615 -2.0651 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364858933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:43 Heat of formation + Delta-G solvation = -92.539035 kcal Electronic energy + Delta-G solvation = -25295.923732 eV Core-core repulsion = 21795.120966 eV Total energy + Delta-G solvation = -3500.802765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84136 -38.70043 -38.29997 -36.98100 -35.55245 -34.91836 -32.34088 -32.14485 -28.95624 -27.55283 -27.40971 -26.25691 -24.85635 -24.77692 -21.80044 -20.75776 -20.10182 -19.17301 -18.54405 -17.67153 -17.27950 -16.68452 -16.12538 -16.08314 -15.98447 -15.75597 -15.39755 -15.11306 -15.06926 -14.80381 -14.08086 -13.78781 -13.56322 -13.39445 -13.35279 -13.22804 -13.12032 -13.07899 -12.90629 -12.75590 -12.75152 -12.53656 -12.28938 -12.22416 -12.10907 -12.04509 -11.80325 -11.47992 -11.13267 -10.70315 -10.42230 -10.27364 -10.15455 -9.26880 -8.00238 -6.15120 -0.43201 1.43807 1.47129 1.53174 1.88385 2.46042 2.53422 2.98669 3.24309 3.29741 3.65080 4.04580 4.15098 4.16794 4.29074 4.33643 4.44691 4.54733 4.66814 4.67744 4.70432 4.74907 4.76897 4.81349 4.94388 5.01345 5.06575 5.07094 5.11368 5.16571 5.21678 5.23310 5.50046 5.54514 5.68518 5.70236 6.04959 6.08241 6.09798 6.16193 6.26870 6.45062 6.91421 7.52409 8.99332 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.005245 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.604118 B = 5337.053017 C = 6316.085501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.039 3.961 4 C 0.123 3.877 5 N -1.004 6.004 6 S 2.802 3.198 7 O -1.008 7.008 8 O -1.005 7.005 9 N -1.118 6.118 10 C 0.148 3.852 11 C 0.054 3.946 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.026 3.974 17 N -0.903 5.903 18 Si 0.943 3.057 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.125 3.875 23 C 0.040 3.960 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.018 0.982 27 H 0.030 0.970 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.258 0.742 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -11.837 11.811 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.090 4.090 4 C -0.002 4.002 5 N -0.846 5.846 6 S 2.811 3.189 7 O -0.992 6.992 8 O -0.989 6.989 9 N -0.881 5.881 10 C 0.022 3.978 11 C 0.052 3.948 12 C -0.181 4.181 13 C -0.176 4.176 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.770 3.230 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.194 1.194 22 C 0.000 4.000 23 C -0.089 4.089 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.210 -12.016 12.429 17.583 hybrid contribution -0.969 1.493 -1.540 2.354 sum -4.179 -10.523 10.889 15.708 Atomic orbital electron populations 1.22413 0.86010 1.03151 1.00672 1.61955 1.08686 1.13227 1.42993 1.22525 0.94872 0.90015 1.01611 1.21633 0.93002 0.93667 0.91901 1.58024 1.54242 1.23315 1.49052 1.01157 0.73225 0.72021 0.72527 1.93552 1.72937 1.59176 1.73495 1.93549 1.73673 1.49574 1.82101 1.55781 1.70544 1.37597 1.24136 1.21229 0.93251 0.83439 0.99914 1.18300 0.93003 0.93320 0.90195 1.21680 0.96776 0.97767 1.01841 1.21656 0.97636 0.96504 1.01838 1.21325 1.33376 1.07113 0.94559 0.92708 1.25500 0.96328 1.00444 0.95129 1.69962 1.48037 1.37614 0.98529 0.85808 0.78787 0.81163 0.77244 1.20749 1.21435 1.19387 1.21656 0.92905 0.81772 1.03689 1.22530 0.94935 0.99781 0.91668 0.89999 0.90416 0.96337 0.95200 0.87923 0.88996 0.89646 0.74784 0.92325 0.92716 0.95116 0.92546 0.96375 0.95608 0.92437 0.95037 0.93285 0.89086 0.88918 0.87551 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.58 127.69 1.22 1.62 16 2 N -0.54 -10.27 4.88 -921.46 -4.50 -14.77 16 3 C 0.04 0.81 5.62 86.38 0.49 1.29 16 4 C 0.12 2.76 6.53 86.35 0.56 3.32 16 5 N -1.00 -24.89 3.39 -512.15 -1.73 -26.62 16 6 S 2.80 88.18 6.15 -56.49 -0.35 87.84 16 7 O -1.01 -37.85 16.39 -128.00 -2.10 -39.95 16 8 O -1.00 -34.74 16.92 -128.00 -2.17 -36.91 16 9 N -1.12 -36.73 5.30 -187.50 -0.99 -37.72 16 10 C 0.15 5.55 5.08 86.38 0.44 5.99 16 11 C 0.05 2.41 0.51 -52.93 -0.03 2.38 16 12 C -0.12 -5.69 8.04 71.98 0.58 -5.11 16 13 C -0.12 -5.14 8.11 71.98 0.58 -4.56 16 14 C -0.52 -26.51 8.01 25.60 0.20 -26.30 16 15 H 0.05 2.72 7.75 -2.91 -0.02 2.69 16 16 C 0.03 1.32 5.13 84.65 0.43 1.76 16 17 N -0.90 -48.30 9.46 21.45 0.20 -48.10 16 18 Si 0.94 41.59 29.54 68.60 2.03 43.61 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 C 0.12 2.53 6.53 86.35 0.56 3.09 16 23 C 0.04 0.75 5.62 86.38 0.49 1.24 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 26 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.03 0.73 7.24 -2.39 -0.02 0.71 16 28 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 29 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 30 H 0.09 2.07 7.22 -2.39 -0.02 2.05 16 31 H 0.42 13.22 6.49 -96.75 -0.63 12.59 16 32 H 0.06 2.06 7.24 -2.39 -0.02 2.04 16 33 H 0.05 2.16 7.75 -2.39 -0.02 2.14 16 34 H 0.03 1.25 7.04 -2.39 -0.02 1.23 16 35 H 0.06 2.87 6.25 -2.39 -0.01 2.86 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 2.84 6.11 -2.39 -0.01 2.83 16 39 H 0.03 1.17 6.60 -2.39 -0.02 1.16 16 40 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.85 7.22 -2.39 -0.02 1.83 16 43 H 0.11 1.50 8.11 -2.39 -0.02 1.48 16 44 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -62.48 348.54 -3.72 -66.20 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.36 Total: 21.70 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.54 Total: -15.28 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -7.03 Total: -127.22 kcal Atomic # 8 Polarization: -72.59 SS G_CDS: -4.26 Total: -76.86 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 88.18 SS G_CDS: -0.35 Total: 87.84 kcal Total: -62.48 -3.72 -66.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364858933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.342 kcal (2) G-P(sol) polarization free energy of solvation -62.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds