Wall clock time and date at job start Tue Mar 31 2020 09:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47211 * 2 1 4 4 C 1.50703 * 109.47078 * 240.00084 * 2 1 3 5 5 H 1.07995 * 120.00042 * 267.33022 * 4 2 1 6 6 C 1.37878 * 119.99640 * 87.33015 * 4 2 1 7 7 N 1.31507 * 120.00033 * 353.64306 * 6 4 2 8 8 Si 1.86801 * 119.99519 * 173.64622 * 6 4 2 9 9 H 1.48493 * 109.47308 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46897 * 239.99501 * 8 6 4 11 11 H 1.48501 * 109.47098 * 120.00030 * 8 6 4 12 12 N 1.46497 * 109.47273 * 120.00297 * 2 1 3 13 13 C 1.46504 * 119.99962 * 59.99736 * 12 2 1 14 14 S 1.65608 * 120.00096 * 239.99851 * 12 2 1 15 15 O 1.42101 * 106.40254 * 203.53812 * 14 12 2 16 16 O 1.42099 * 106.40014 * 336.46334 * 14 12 2 17 17 N 1.65605 * 107.21479 * 89.99876 * 14 12 2 18 18 C 1.46498 * 119.99688 * 65.00384 * 17 14 12 19 19 C 1.53005 * 109.46843 * 164.99725 * 18 17 14 20 20 H 1.09002 * 110.28880 * 54.29492 * 19 18 17 21 21 C 1.54253 * 110.32542 * 176.42524 * 19 18 17 22 22 C 1.54382 * 105.06283 * 118.89688 * 21 19 18 23 23 N 1.48557 * 104.59214 * 23.84986 * 22 21 19 24 24 C 1.46900 * 111.00005 * 200.95738 * 23 22 21 25 25 C 1.48717 * 104.29354 * 320.57579 * 23 22 21 26 26 H 1.09001 * 109.47047 * 174.36100 * 1 2 3 27 27 H 1.09001 * 109.46903 * 294.35727 * 1 2 3 28 28 H 1.08991 * 109.47601 * 54.35434 * 1 2 3 29 29 H 0.96997 * 120.00216 * 1.89918 * 7 6 4 30 30 H 1.09001 * 109.47128 * 90.00407 * 13 12 2 31 31 H 1.09007 * 109.46814 * 209.99573 * 13 12 2 32 32 H 1.08996 * 109.47208 * 329.99751 * 13 12 2 33 33 H 0.96997 * 119.99684 * 245.00178 * 17 14 12 34 34 H 1.08999 * 109.46909 * 284.99201 * 18 17 14 35 35 H 1.09003 * 109.47333 * 45.00122 * 18 17 14 36 36 H 1.09003 * 110.32734 * 237.79580 * 21 19 18 37 37 H 1.09005 * 110.32319 * 359.97438 * 21 19 18 38 38 H 1.09001 * 110.41190 * 142.63419 * 22 21 19 39 39 H 1.08998 * 110.40844 * 265.07433 * 22 21 19 40 40 H 1.09009 * 109.46673 * 60.13473 * 24 23 22 41 41 H 1.09005 * 109.47083 * 180.12584 * 24 23 22 42 42 H 1.08997 * 109.47314 * 300.13330 * 24 23 22 43 43 H 1.09001 * 110.38644 * 280.64493 * 25 23 22 44 44 H 1.08995 * 110.51130 * 158.14246 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2534 -1.7668 -1.1917 6 6 2.2096 -0.0116 -2.4058 7 7 1.8238 1.2428 -2.4895 8 14 2.9978 -0.8469 -3.8791 9 1 3.3403 -2.2486 -3.5287 10 1 4.2333 -0.1162 -4.2599 11 1 2.0469 -0.8394 -5.0196 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 6 0.6088 0.8073 5.4379 20 1 0.0744 1.6763 5.0540 21 6 -0.3199 -0.0417 6.3302 22 6 0.3492 -0.0403 7.7214 23 7 1.1857 1.1873 7.7332 24 6 2.2455 1.0925 8.7461 25 6 1.7614 1.2525 6.3635 26 1 -0.3633 -1.0227 -0.1010 27 1 -0.3633 0.4238 0.9362 28 1 -0.3634 0.5988 -0.8350 29 1 1.4398 1.6848 -1.7162 30 1 2.4157 -2.7378 0.9716 31 1 1.6239 -2.2853 2.5001 32 1 0.6904 -2.3002 0.9846 33 1 1.9055 1.7749 3.4682 34 1 0.3189 -0.4568 3.7177 35 1 1.7671 -0.8426 4.6782 36 1 -1.3097 0.4115 6.3857 37 1 -0.3898 -1.0587 5.9442 38 1 -0.4057 0.0064 8.5063 39 1 0.9724 -0.9261 7.8444 40 1 2.8851 0.2382 8.5238 41 1 2.8415 2.0051 8.7349 42 1 1.7965 0.9638 9.7309 43 1 2.6063 0.5698 6.2738 44 1 2.0677 2.2713 6.1261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424186496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:23 Heat of formation + Delta-G solvation = -77.480482 kcal Electronic energy + Delta-G solvation = -24588.886767 eV Core-core repulsion = 21088.736990 eV Total energy + Delta-G solvation = -3500.149778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40772 -36.71826 -36.36447 -35.38862 -35.24798 -32.70462 -32.11033 -29.19426 -29.11665 -26.65695 -25.71139 -24.74903 -24.14783 -21.44713 -21.02242 -20.48019 -18.84704 -17.51221 -16.94102 -16.85959 -16.44311 -15.91183 -15.26729 -14.95884 -14.62320 -14.23562 -13.80382 -13.65582 -13.49155 -13.44221 -13.08748 -12.80855 -12.54837 -12.08387 -11.93860 -11.88295 -11.79568 -11.73591 -11.53140 -11.45523 -11.33927 -11.28082 -11.10542 -11.04942 -10.77096 -10.72988 -10.59484 -10.16226 -10.13015 -9.38571 -8.98383 -8.78915 -8.47457 -7.88970 -6.44193 -4.15450 1.16032 3.41111 3.44372 3.48804 3.59941 3.73924 4.06850 4.33993 4.44484 4.49301 4.59037 4.91958 4.95465 5.07543 5.16829 5.17030 5.23118 5.28298 5.37899 5.43271 5.49295 5.54213 5.59101 5.64177 5.73570 5.76693 5.94388 6.00399 6.10391 6.24374 6.41424 6.42306 6.52379 6.55267 6.67811 6.70433 7.00091 7.15137 7.33076 7.62985 8.05992 8.40590 8.77341 9.54966 10.94325 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.003661 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.062595 B = 7646.980359 C = 7848.008965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.250 3.750 3 H 0.060 0.940 4 C -0.598 4.598 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 1.074 2.926 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.985 5.985 13 C 0.109 3.891 14 S 2.774 3.226 15 O -0.997 6.997 16 O -0.974 6.974 17 N -1.134 6.134 18 C 0.129 3.871 19 C -0.098 4.098 20 H 0.089 0.911 21 C -0.119 4.119 22 C 0.030 3.970 23 N -0.519 5.519 24 C 0.012 3.988 25 C 0.034 3.966 26 H 0.045 0.955 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.271 0.729 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -2.616 18.786 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.147 3.853 3 H 0.078 0.922 4 C -0.638 4.638 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.537 5.537 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.828 5.828 13 C -0.038 4.038 14 S 2.784 3.216 15 O -0.980 6.980 16 O -0.958 6.958 17 N -0.893 5.893 18 C 0.002 3.998 19 C -0.118 4.118 20 H 0.107 0.893 21 C -0.157 4.157 22 C -0.098 4.098 23 N -0.242 5.242 24 C -0.137 4.137 25 C -0.094 4.094 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.873 -2.056 17.364 17.909 hybrid contribution -0.390 -0.585 1.495 1.652 sum -4.264 -2.641 18.859 19.514 Atomic orbital electron populations 1.22193 0.99018 1.00544 0.98678 1.18876 0.90457 0.93604 0.82381 0.92244 1.22150 1.48634 0.97399 0.95619 0.92369 1.25860 0.95120 0.95964 1.01321 1.70751 1.38102 1.11837 1.33041 0.83475 0.76615 0.74806 0.74858 1.21444 1.21133 1.21332 1.57858 1.70043 1.19596 1.35275 1.21151 1.01487 0.82430 0.98691 1.02186 0.73770 0.73236 0.72434 1.93527 1.69175 1.60753 1.74588 1.93620 1.74296 1.55999 1.71846 1.56245 1.62641 1.17345 1.53076 1.21329 0.94795 0.92996 0.90706 1.22107 0.96140 0.99037 0.94563 0.89281 1.22326 0.99109 1.00373 0.93929 1.23146 0.97032 0.91537 0.98087 1.65393 1.19325 1.35763 1.03751 1.22513 0.94044 1.01116 0.95990 1.23277 0.96171 1.01954 0.87994 0.93593 0.96004 0.92538 0.91746 0.93147 0.93390 0.91263 0.75548 0.91538 0.90837 0.90493 0.90668 0.90086 0.93668 0.95189 0.91195 0.91342 0.93005 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.98 37.16 0.33 -2.68 16 2 C 0.25 5.96 2.26 -69.08 -0.16 5.81 16 3 H 0.06 1.58 5.67 -51.93 -0.29 1.28 16 4 C -0.60 -16.14 8.29 -34.44 -0.29 -16.43 16 5 H 0.06 1.56 7.36 -52.49 -0.39 1.18 16 6 C 0.02 0.66 5.45 -17.82 -0.10 0.56 16 7 N -0.90 -26.54 13.62 55.43 0.75 -25.78 16 8 Si 1.07 25.07 29.91 -169.99 -5.08 19.99 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.99 -20.14 3.12 -115.85 -0.36 -20.50 16 13 C 0.11 1.89 9.37 59.85 0.56 2.46 16 14 S 2.77 54.27 6.10 -107.50 -0.66 53.61 16 15 O -1.00 -20.78 16.68 -57.17 -0.95 -21.73 16 16 O -0.97 -23.14 16.70 -57.17 -0.95 -24.09 16 17 N -1.13 -16.11 5.88 -10.61 -0.06 -16.18 16 18 C 0.13 1.50 5.35 -4.04 -0.02 1.48 16 19 C -0.10 -0.96 3.11 -89.23 -0.28 -1.24 16 20 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.12 -0.98 6.65 -25.35 -0.17 -1.15 16 22 C 0.03 0.25 6.50 -2.18 -0.01 0.24 16 23 N -0.52 -5.12 5.66 -238.09 -1.35 -6.46 16 24 C 0.01 0.10 9.53 60.06 0.57 0.68 16 25 C 0.03 0.35 5.89 -2.09 -0.01 0.34 16 26 H 0.04 0.91 6.91 -51.93 -0.36 0.55 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.26 7.75 -51.93 -0.40 0.86 16 29 H 0.27 7.88 6.35 -40.82 -0.26 7.62 16 30 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.05 0.69 7.79 -51.92 -0.40 0.28 16 32 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 33 H 0.41 5.17 8.65 -34.47 -0.30 4.88 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.56 7.71 -51.93 -0.40 0.16 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.38 7.97 -51.93 -0.41 -0.04 16 40 H 0.03 0.25 7.98 -51.92 -0.41 -0.16 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -33.57 359.44 -10.17 -43.74 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.36 Total: 1.93 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 0.43 Total: -9.94 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.02 Total: -68.92 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.91 Total: -45.82 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Atomic # 16 Polarization: 54.27 SS G_CDS: -0.66 Total: 53.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.57 -10.17 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424186496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.741 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds