Wall clock time and date at job start Tue Mar 31 2020 09:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47211 * 2 1 4 4 C 1.50703 * 109.47078 * 240.00084 * 2 1 3 5 5 H 1.07995 * 120.00042 * 267.33022 * 4 2 1 6 6 C 1.37878 * 119.99640 * 87.33015 * 4 2 1 7 7 N 1.31507 * 120.00033 * 353.64306 * 6 4 2 8 8 Si 1.86801 * 119.99519 * 173.64622 * 6 4 2 9 9 H 1.48493 * 109.47308 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46897 * 239.99501 * 8 6 4 11 11 H 1.48501 * 109.47098 * 120.00030 * 8 6 4 12 12 N 1.46497 * 109.47273 * 120.00297 * 2 1 3 13 13 C 1.46504 * 119.99962 * 59.99736 * 12 2 1 14 14 S 1.65608 * 120.00096 * 239.99851 * 12 2 1 15 15 O 1.42101 * 106.40254 * 203.53812 * 14 12 2 16 16 O 1.42099 * 106.40014 * 336.46334 * 14 12 2 17 17 N 1.65605 * 107.21479 * 89.99876 * 14 12 2 18 18 C 1.46498 * 119.99688 * 65.00384 * 17 14 12 19 19 C 1.53005 * 109.46843 * 164.99725 * 18 17 14 20 20 H 1.09002 * 110.28880 * 54.29492 * 19 18 17 21 21 C 1.54253 * 110.32542 * 176.42524 * 19 18 17 22 22 C 1.54382 * 105.06283 * 118.89688 * 21 19 18 23 23 N 1.48557 * 104.59214 * 23.84986 * 22 21 19 24 24 C 1.46900 * 111.00005 * 200.95738 * 23 22 21 25 25 C 1.48717 * 104.29354 * 320.57579 * 23 22 21 26 26 H 1.09001 * 109.47047 * 174.36100 * 1 2 3 27 27 H 1.09001 * 109.46903 * 294.35727 * 1 2 3 28 28 H 1.08991 * 109.47601 * 54.35434 * 1 2 3 29 29 H 0.96997 * 120.00216 * 1.89918 * 7 6 4 30 30 H 1.09001 * 109.47128 * 90.00407 * 13 12 2 31 31 H 1.09007 * 109.46814 * 209.99573 * 13 12 2 32 32 H 1.08996 * 109.47208 * 329.99751 * 13 12 2 33 33 H 0.96997 * 119.99684 * 245.00178 * 17 14 12 34 34 H 1.08999 * 109.46909 * 284.99201 * 18 17 14 35 35 H 1.09003 * 109.47333 * 45.00122 * 18 17 14 36 36 H 1.09003 * 110.32734 * 237.79580 * 21 19 18 37 37 H 1.09005 * 110.32319 * 359.97438 * 21 19 18 38 38 H 1.09001 * 110.41190 * 142.63419 * 22 21 19 39 39 H 1.08998 * 110.40844 * 265.07433 * 22 21 19 40 40 H 1.09009 * 109.46673 * 60.13473 * 24 23 22 41 41 H 1.09005 * 109.47083 * 180.12584 * 24 23 22 42 42 H 1.08997 * 109.47314 * 300.13330 * 24 23 22 43 43 H 1.09001 * 110.38644 * 280.64493 * 25 23 22 44 44 H 1.08995 * 110.51130 * 158.14246 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2534 -1.7668 -1.1917 6 6 2.2096 -0.0116 -2.4058 7 7 1.8238 1.2428 -2.4895 8 14 2.9978 -0.8469 -3.8791 9 1 3.3403 -2.2486 -3.5287 10 1 4.2333 -0.1162 -4.2599 11 1 2.0469 -0.8394 -5.0196 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0933 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5749 17 7 1.9607 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 6 0.6088 0.8073 5.4379 20 1 0.0744 1.6763 5.0540 21 6 -0.3199 -0.0417 6.3302 22 6 0.3492 -0.0403 7.7214 23 7 1.1857 1.1873 7.7332 24 6 2.2455 1.0925 8.7461 25 6 1.7614 1.2525 6.3635 26 1 -0.3633 -1.0227 -0.1010 27 1 -0.3633 0.4238 0.9362 28 1 -0.3634 0.5988 -0.8350 29 1 1.4398 1.6848 -1.7162 30 1 2.4157 -2.7378 0.9716 31 1 1.6239 -2.2853 2.5001 32 1 0.6904 -2.3002 0.9846 33 1 1.9055 1.7749 3.4682 34 1 0.3189 -0.4568 3.7177 35 1 1.7671 -0.8426 4.6782 36 1 -1.3097 0.4115 6.3857 37 1 -0.3898 -1.0587 5.9442 38 1 -0.4057 0.0064 8.5063 39 1 0.9724 -0.9261 7.8444 40 1 2.8851 0.2382 8.5238 41 1 2.8415 2.0051 8.7349 42 1 1.7965 0.9638 9.7309 43 1 2.6063 0.5698 6.2738 44 1 2.0677 2.2713 6.1261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424186496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:23 Heat of formation + Delta-G solvation = -104.258414 kcal Electronic energy + Delta-G solvation = -24590.047946 eV Core-core repulsion = 21088.736990 eV Total energy + Delta-G solvation = -3501.310956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16002 -38.41401 -38.08586 -36.95259 -36.41765 -34.65075 -32.94325 -30.95525 -29.89082 -27.47951 -27.22699 -26.76140 -24.98704 -22.81790 -22.14550 -21.35714 -20.33076 -19.16588 -18.64342 -18.40931 -17.54066 -16.91988 -16.53905 -15.83478 -15.76994 -15.62283 -15.32819 -15.17370 -15.00672 -14.69057 -14.15541 -13.74864 -13.69871 -13.65003 -13.55049 -13.28606 -13.19494 -13.10943 -12.84728 -12.81138 -12.57131 -12.50605 -12.42816 -12.30297 -12.06187 -12.01418 -11.93662 -11.92037 -11.43390 -10.86185 -10.58190 -10.48413 -9.64145 -9.51635 -8.60432 -6.32145 -0.39227 1.53708 1.62486 1.77779 1.98855 2.54854 2.59513 3.03332 3.21836 3.36833 3.60608 3.71087 3.82603 3.98036 4.25594 4.34107 4.38047 4.40807 4.48995 4.51060 4.54420 4.66005 4.71690 4.76446 4.78167 4.80635 4.84430 4.93254 4.96160 4.98967 5.04978 5.07548 5.23810 5.29411 5.35211 5.53102 5.81100 5.81928 6.00900 6.06148 6.09867 6.29818 6.62504 7.45700 8.78386 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.003661 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.062595 B = 7646.980359 C = 7848.008965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.251 3.749 3 H 0.028 0.972 4 C -0.608 4.608 5 H 0.055 0.945 6 C -0.029 4.029 7 N -0.932 5.932 8 Si 1.113 2.887 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.992 5.992 13 C 0.101 3.899 14 S 2.793 3.207 15 O -1.011 7.011 16 O -1.022 7.022 17 N -1.118 6.118 18 C 0.122 3.878 19 C -0.093 4.093 20 H 0.094 0.906 21 C -0.115 4.115 22 C 0.028 3.972 23 N -0.529 5.529 24 C 0.011 3.989 25 C 0.030 3.970 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.421 0.579 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -3.829 20.268 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.147 3.853 3 H 0.046 0.954 4 C -0.648 4.648 5 H 0.073 0.927 6 C -0.229 4.229 7 N -0.569 5.569 8 Si 0.936 3.064 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.802 3.198 15 O -0.994 6.994 16 O -1.006 7.006 17 N -0.881 5.881 18 C -0.003 4.003 19 C -0.113 4.113 20 H 0.112 0.888 21 C -0.154 4.154 22 C -0.100 4.100 23 N -0.253 5.253 24 C -0.138 4.138 25 C -0.098 4.098 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.257 0.743 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.210 -3.294 18.859 19.841 hybrid contribution 0.024 -0.231 1.221 1.243 sum -5.187 -3.525 20.079 21.036 Atomic orbital electron populations 1.21982 0.96505 1.01133 0.99494 1.18634 0.92214 0.91859 0.82601 0.95433 1.22519 1.47892 0.97431 0.96931 0.92667 1.27121 0.95359 0.96024 1.04347 1.70854 1.40324 1.12894 1.32838 0.82984 0.75950 0.74762 0.72725 1.19647 1.21371 1.20061 1.57630 1.69991 1.20976 1.34815 1.21380 1.01665 0.80362 1.00992 1.01326 0.73733 0.72330 0.72384 1.93506 1.69931 1.61299 1.74643 1.93555 1.76004 1.57583 1.73454 1.55760 1.62325 1.18092 1.51924 1.21621 0.94787 0.92935 0.91002 1.22073 0.96148 0.99227 0.93867 0.88759 1.22351 0.99030 1.00781 0.93216 1.23227 0.97100 0.90962 0.98718 1.65408 1.19741 1.36694 1.03485 1.22554 0.93911 1.01004 0.96314 1.23277 0.96111 1.01504 0.88886 0.92423 0.92802 0.94648 0.92856 0.94401 0.90009 0.89983 0.74335 0.89907 0.90953 0.89442 0.89515 0.88912 0.93658 0.95521 0.91196 0.90049 0.94317 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.98 71.98 0.65 -4.67 16 2 C 0.25 11.98 2.26 44.25 0.10 12.08 16 3 H 0.03 1.51 5.67 -2.39 -0.01 1.49 16 4 C -0.61 -32.93 8.29 25.60 0.21 -32.72 16 5 H 0.06 2.95 7.36 -2.91 -0.02 2.93 16 6 C -0.03 -1.62 5.45 84.66 0.46 -1.16 16 7 N -0.93 -56.06 13.62 21.45 0.29 -55.77 16 8 Si 1.11 50.51 29.91 68.60 2.05 52.56 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 N -0.99 -39.54 3.12 -520.44 -1.62 -41.16 16 13 C 0.10 3.31 9.37 127.77 1.20 4.51 16 14 S 2.79 107.75 6.10 -56.49 -0.34 107.41 16 15 O -1.01 -41.14 16.68 -128.00 -2.14 -43.28 16 16 O -1.02 -49.55 16.70 -128.00 -2.14 -51.69 16 17 N -1.12 -30.05 5.88 -187.48 -1.10 -31.15 16 18 C 0.12 2.53 5.35 86.38 0.46 2.99 16 19 C -0.09 -1.58 3.11 -9.90 -0.03 -1.61 16 20 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 21 C -0.12 -1.54 6.65 31.49 0.21 -1.33 16 22 C 0.03 0.40 6.50 86.45 0.56 0.96 16 23 N -0.53 -9.45 5.66 -907.17 -5.13 -14.59 16 24 C 0.01 0.17 9.53 127.69 1.22 1.38 16 25 C 0.03 0.58 5.89 86.42 0.51 1.09 16 26 H 0.06 2.16 6.91 -2.39 -0.02 2.15 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 1.56 7.75 -2.39 -0.02 1.54 16 29 H 0.26 15.70 6.35 -92.71 -0.59 15.11 16 30 H 0.04 1.31 8.10 -2.39 -0.02 1.30 16 31 H 0.08 2.09 7.79 -2.38 -0.02 2.07 16 32 H 0.08 2.46 6.54 -2.39 -0.02 2.44 16 33 H 0.42 10.07 8.65 -96.75 -0.84 9.24 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.55 7.63 -2.39 -0.02 1.53 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.97 7.71 -2.38 -0.02 0.96 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.65 7.97 -2.39 -0.02 0.63 16 40 H 0.03 0.42 7.98 -2.38 -0.02 0.40 16 41 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 0.84 7.54 -2.39 -0.02 0.82 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.02 359.44 -4.26 -77.28 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.32 Total: 18.86 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.55 Total: -18.48 kcal Atomic # 7 Polarization: -135.10 SS G_CDS: -7.57 Total: -142.67 kcal Atomic # 8 Polarization: -90.69 SS G_CDS: -4.27 Total: -94.96 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Atomic # 16 Polarization: 107.75 SS G_CDS: -0.34 Total: 107.41 kcal Total: -73.02 -4.26 -77.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424186496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.979 kcal (2) G-P(sol) polarization free energy of solvation -73.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds