Wall clock time and date at job start Tue Mar 31 2020 09:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31510 * 119.99881 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47352 * 59.99684 * 8 6 4 10 10 H 1.48500 * 109.46964 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47120 * 299.99595 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 S 1.65599 * 120.00096 * 120.00384 * 12 2 1 15 15 O 1.42101 * 106.40069 * 23.53574 * 14 12 2 16 16 O 1.42101 * 106.40241 * 156.45778 * 14 12 2 17 17 N 1.65604 * 107.21451 * 269.99597 * 14 12 2 18 18 C 1.46501 * 120.00036 * 65.00556 * 17 14 12 19 19 C 1.52992 * 109.47231 * 164.99820 * 18 17 14 20 20 H 1.08998 * 110.64452 * 308.14748 * 19 18 17 21 21 C 1.54596 * 110.72624 * 184.99771 * 19 18 17 22 22 C 1.53986 * 105.14224 * 219.68322 * 21 19 18 23 23 N 1.47905 * 107.05638 * 358.77090 * 22 21 19 24 24 C 1.46911 * 110.99574 * 145.84411 * 23 22 21 25 25 C 1.48528 * 105.82053 * 25.33235 * 23 22 21 26 26 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 28 28 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 29 29 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 31 31 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 32 32 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 33 33 H 0.96996 * 119.99918 * 244.99766 * 17 14 12 34 34 H 1.09002 * 109.46832 * 284.99632 * 18 17 14 35 35 H 1.09004 * 109.47254 * 44.99070 * 18 17 14 36 36 H 1.09001 * 110.30795 * 338.59958 * 21 19 18 37 37 H 1.09001 * 110.30737 * 100.76268 * 21 19 18 38 38 H 1.08997 * 109.91915 * 118.12597 * 22 21 19 39 39 H 1.09000 * 109.91836 * 239.22321 * 22 21 19 40 40 H 1.09001 * 109.47055 * 60.13049 * 24 23 22 41 41 H 1.09002 * 109.46592 * 180.12480 * 24 23 22 42 42 H 1.09000 * 109.46971 * 300.12663 * 24 23 22 43 43 H 1.08994 * 110.66860 * 202.35493 * 25 23 22 44 44 H 1.09004 * 110.67052 * 79.22712 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8277 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.5794 1.1829 -1.5747 16 8 3.7119 -0.8790 -2.9813 17 7 1.9607 0.8089 -3.3998 18 6 1.0292 1.8618 -2.9876 19 6 0.4947 2.5835 -4.2262 20 1 1.3156 2.9112 -4.8641 21 6 -0.3944 3.7813 -3.8204 22 6 -1.5663 3.7689 -4.8193 23 7 -1.3295 2.6457 -5.7519 24 6 -2.5972 2.0306 -6.1678 25 6 -0.4849 1.6747 -5.0103 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1615 3.4844 30 1 0.7376 -2.1445 -1.9993 31 1 2.4629 -2.5820 -1.9862 32 1 1.5294 -2.5969 -0.4707 33 1 1.9862 0.5188 -4.3250 34 1 0.1985 1.4176 -2.4391 35 1 1.5476 2.5751 -2.3467 36 1 -0.7632 3.6511 -2.8029 37 1 0.1647 4.7132 -3.9046 38 1 -2.5058 3.6184 -4.2876 39 1 -1.5969 4.7105 -5.3675 40 1 -3.2147 2.7753 -6.6701 41 1 -2.3940 1.2063 -6.8514 42 1 -3.1233 1.6541 -5.2906 43 1 0.0579 1.0303 -5.7017 44 1 -1.0912 1.0817 -4.3256 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424186502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:29 Heat of formation + Delta-G solvation = -72.890924 kcal Electronic energy + Delta-G solvation = -24764.067851 eV Core-core repulsion = 21264.117091 eV Total energy + Delta-G solvation = -3499.950759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.28471 -36.68561 -36.16126 -35.30187 -35.18516 -32.58392 -31.99332 -29.13283 -29.05896 -26.55693 -25.50813 -25.20548 -24.01533 -21.21247 -20.84478 -20.42840 -18.67966 -17.27526 -16.91514 -16.55362 -16.24114 -15.81736 -15.19533 -14.96320 -14.60510 -14.21582 -13.96221 -13.60574 -13.34095 -13.25351 -12.90229 -12.70270 -12.43024 -12.05784 -11.90791 -11.78556 -11.69977 -11.59135 -11.45294 -11.35540 -11.22623 -11.04569 -10.90367 -10.87103 -10.83127 -10.66067 -10.44490 -10.24001 -10.06530 -9.30566 -9.21249 -8.64795 -8.46418 -7.98526 -6.09285 -4.15518 1.23790 3.29283 3.33735 3.37078 3.53692 3.82063 4.13130 4.38802 4.46609 4.53049 4.75005 5.00391 5.09100 5.16844 5.22463 5.24195 5.28123 5.34873 5.51752 5.59164 5.63558 5.69471 5.76085 5.78012 5.87824 5.89126 6.08729 6.13191 6.23730 6.37636 6.64366 6.66141 6.76899 6.80674 6.82222 6.99190 7.18068 7.48537 7.60792 7.77335 8.02394 8.25681 8.86098 9.50179 10.96414 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.004433 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.228035 B = 6315.098021 C = 7059.403578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.098 3.902 14 S 2.780 3.220 15 O -0.975 6.975 16 O -0.998 6.998 17 N -1.134 6.134 18 C 0.126 3.874 19 C -0.096 4.096 20 H 0.090 0.910 21 C -0.128 4.128 22 C 0.035 3.965 23 N -0.525 5.525 24 C 0.015 3.985 25 C 0.037 3.963 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.010 0.990 29 H 0.264 0.736 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.082 0.918 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 2.817 -14.301 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.048 4.048 14 S 2.789 3.211 15 O -0.958 6.958 16 O -0.983 6.983 17 N -0.892 5.892 18 C -0.001 4.001 19 C -0.117 4.117 20 H 0.109 0.891 21 C -0.167 4.167 22 C -0.092 4.092 23 N -0.249 5.249 24 C -0.133 4.133 25 C -0.091 4.091 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.240 0.760 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.801 3.248 -14.427 15.885 hybrid contribution -0.708 -0.928 1.187 1.665 sum -6.510 2.319 -13.239 14.934 Atomic orbital electron populations 1.22163 0.98354 0.99791 1.00400 1.18724 0.91186 0.93034 0.80623 0.92369 1.21296 1.31645 1.13058 0.90082 0.91969 1.24892 0.94927 0.94997 0.98970 1.69840 1.36506 1.22652 1.23888 0.86559 0.79393 0.79563 0.81904 1.20141 1.21216 1.20257 1.57651 1.69958 1.19930 1.35716 1.21276 0.98689 0.82309 1.02549 1.01906 0.73545 0.73155 0.72526 1.93596 1.73882 1.55890 1.72421 1.93533 1.69792 1.60168 1.74770 1.56163 1.57433 1.51777 1.23857 1.21354 0.93033 0.89515 0.96197 1.22278 0.97950 0.95069 0.96361 0.89133 1.22444 0.96101 0.98698 0.99414 1.22870 0.97538 0.95519 0.93320 1.64729 1.15196 1.08128 1.36834 1.22514 0.91047 0.99712 1.00068 1.23348 0.95030 0.94581 0.96093 0.94841 0.88923 0.97113 0.92652 0.94561 0.91971 0.89914 0.75965 0.91113 0.89973 0.90498 0.90458 0.93628 0.90386 0.91456 0.91325 0.95249 0.89990 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.97 37.16 0.33 -2.88 16 2 C 0.27 6.35 2.62 -69.08 -0.18 6.17 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.81 7.99 -34.44 -0.28 -14.09 16 5 H 0.06 1.64 7.33 -52.49 -0.38 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -20.10 3.12 -115.84 -0.36 -20.46 16 13 C 0.10 1.73 9.65 59.85 0.58 2.31 16 14 S 2.78 53.60 6.14 -107.50 -0.66 52.94 16 15 O -0.97 -22.51 16.17 -57.17 -0.92 -23.43 16 16 O -1.00 -20.51 16.74 -57.17 -0.96 -21.47 16 17 N -1.13 -16.28 6.00 -10.61 -0.06 -16.35 16 18 C 0.13 1.71 5.56 -4.05 -0.02 1.69 16 19 C -0.10 -1.06 3.13 -88.76 -0.28 -1.34 16 20 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.13 -1.29 6.51 -25.38 -0.17 -1.45 16 22 C 0.04 0.34 6.70 -2.76 -0.02 0.32 16 23 N -0.53 -5.42 5.55 -238.72 -1.33 -6.74 16 24 C 0.02 0.13 9.40 60.07 0.56 0.70 16 25 C 0.04 0.39 5.76 -1.90 -0.01 0.38 16 26 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 27 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 28 H 0.01 0.19 6.18 -51.93 -0.32 -0.13 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.03 7.02 -51.93 -0.36 0.67 16 32 H 0.08 1.53 7.02 -51.93 -0.36 1.16 16 33 H 0.41 4.82 8.49 -34.47 -0.29 4.52 16 34 H 0.07 1.00 6.03 -51.93 -0.31 0.68 16 35 H 0.08 1.24 7.75 -51.93 -0.40 0.83 16 36 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.42 7.73 -51.93 -0.40 0.02 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.03 0.25 8.00 -51.93 -0.42 -0.16 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.57 7.77 -51.93 -0.40 0.16 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -31.35 354.62 -10.15 -41.50 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.24 Total: 3.00 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 0.43 Total: -6.57 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -1.12 Total: -67.20 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.88 Total: -44.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 53.60 SS G_CDS: -0.66 Total: 52.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.35 -10.15 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424186502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.390 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds