Wall clock time and date at job start Tue Mar 31 2020 09:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31510 * 119.99881 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47352 * 59.99684 * 8 6 4 10 10 H 1.48500 * 109.46964 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47120 * 299.99595 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 S 1.65599 * 120.00096 * 120.00384 * 12 2 1 15 15 O 1.42101 * 106.40069 * 23.53574 * 14 12 2 16 16 O 1.42101 * 106.40241 * 156.45778 * 14 12 2 17 17 N 1.65604 * 107.21451 * 269.99597 * 14 12 2 18 18 C 1.46501 * 120.00036 * 65.00556 * 17 14 12 19 19 C 1.52992 * 109.47231 * 164.99820 * 18 17 14 20 20 H 1.08998 * 110.64452 * 308.14748 * 19 18 17 21 21 C 1.54596 * 110.72624 * 184.99771 * 19 18 17 22 22 C 1.53986 * 105.14224 * 219.68322 * 21 19 18 23 23 N 1.47905 * 107.05638 * 358.77090 * 22 21 19 24 24 C 1.46911 * 110.99574 * 145.84411 * 23 22 21 25 25 C 1.48528 * 105.82053 * 25.33235 * 23 22 21 26 26 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 28 28 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 29 29 H 0.97007 * 119.99999 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 31 31 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 32 32 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 33 33 H 0.96996 * 119.99918 * 244.99766 * 17 14 12 34 34 H 1.09002 * 109.46832 * 284.99632 * 18 17 14 35 35 H 1.09004 * 109.47254 * 44.99070 * 18 17 14 36 36 H 1.09001 * 110.30795 * 338.59958 * 21 19 18 37 37 H 1.09001 * 110.30737 * 100.76268 * 21 19 18 38 38 H 1.08997 * 109.91915 * 118.12597 * 22 21 19 39 39 H 1.09000 * 109.91836 * 239.22321 * 22 21 19 40 40 H 1.09001 * 109.47055 * 60.13049 * 24 23 22 41 41 H 1.09002 * 109.46592 * 180.12480 * 24 23 22 42 42 H 1.09000 * 109.46971 * 300.12663 * 24 23 22 43 43 H 1.08994 * 110.66860 * 202.35493 * 25 23 22 44 44 H 1.09004 * 110.67052 * 79.22712 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3224 -1.1194 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8277 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 3.5794 1.1829 -1.5747 16 8 3.7119 -0.8790 -2.9813 17 7 1.9607 0.8089 -3.3998 18 6 1.0292 1.8618 -2.9876 19 6 0.4947 2.5835 -4.2262 20 1 1.3156 2.9112 -4.8641 21 6 -0.3944 3.7813 -3.8204 22 6 -1.5663 3.7689 -4.8193 23 7 -1.3295 2.6457 -5.7519 24 6 -2.5972 2.0306 -6.1678 25 6 -0.4849 1.6747 -5.0103 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1615 3.4844 30 1 0.7376 -2.1445 -1.9993 31 1 2.4629 -2.5820 -1.9862 32 1 1.5294 -2.5969 -0.4707 33 1 1.9862 0.5188 -4.3250 34 1 0.1985 1.4176 -2.4391 35 1 1.5476 2.5751 -2.3467 36 1 -0.7632 3.6511 -2.8029 37 1 0.1647 4.7132 -3.9046 38 1 -2.5058 3.6184 -4.2876 39 1 -1.5969 4.7105 -5.3675 40 1 -3.2147 2.7753 -6.6701 41 1 -2.3940 1.2063 -6.8514 42 1 -3.1233 1.6541 -5.2906 43 1 0.0579 1.0303 -5.7017 44 1 -1.0912 1.0817 -4.3256 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424186502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:28 Heat of formation + Delta-G solvation = -97.280871 kcal Electronic energy + Delta-G solvation = -24765.125478 eV Core-core repulsion = 21264.117091 eV Total energy + Delta-G solvation = -3501.008387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11705 -38.33914 -37.86845 -36.87761 -36.40368 -34.50669 -32.89717 -30.90891 -29.92385 -27.42579 -27.22181 -26.98602 -24.95364 -22.61278 -21.99041 -21.39264 -20.16223 -18.83530 -18.55913 -18.02971 -17.67714 -16.98367 -16.64703 -16.24742 -15.74499 -15.45300 -15.17745 -14.88879 -14.75152 -14.39703 -14.24721 -13.83936 -13.79333 -13.64271 -13.40621 -13.16308 -13.10697 -12.99443 -12.89320 -12.69899 -12.61223 -12.41671 -12.35947 -12.22589 -12.11930 -12.00921 -11.90078 -11.75814 -11.50932 -11.15392 -10.53067 -10.42397 -9.65358 -9.40316 -8.10928 -6.23713 -0.30988 1.43391 1.45552 1.52111 2.06391 2.43974 2.64039 3.05237 3.17693 3.44928 3.61342 3.69651 3.93240 4.14621 4.24587 4.27845 4.41297 4.50308 4.54656 4.59801 4.73255 4.76903 4.78012 4.80183 4.85006 4.96803 5.01511 5.03701 5.05976 5.09722 5.16306 5.22338 5.27691 5.35527 5.62282 5.70732 5.88699 5.89874 6.07817 6.11929 6.21536 6.32258 6.83179 7.44829 8.92904 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.004433 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.228035 B = 6315.098021 C = 7059.403578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.027 0.973 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.267 1.267 12 N -0.997 5.997 13 C 0.094 3.906 14 S 2.796 3.204 15 O -1.017 7.017 16 O -1.011 7.011 17 N -1.113 6.113 18 C 0.126 3.874 19 C -0.090 4.090 20 H 0.095 0.905 21 C -0.129 4.129 22 C 0.037 3.963 23 N -0.535 5.535 24 C 0.014 3.986 25 C 0.038 3.962 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.424 0.576 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.090 0.910 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 2.360 -15.561 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.192 1.192 12 N -0.839 5.839 13 C -0.052 4.052 14 S 2.805 3.195 15 O -1.000 7.000 16 O -0.995 6.995 17 N -0.876 5.876 18 C -0.001 4.001 19 C -0.111 4.111 20 H 0.113 0.887 21 C -0.168 4.168 22 C -0.091 4.091 23 N -0.259 5.259 24 C -0.134 4.134 25 C -0.089 4.089 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.108 0.892 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.754 2.762 -15.709 17.321 hybrid contribution -0.412 -0.763 1.502 1.734 sum -7.166 1.999 -14.207 16.037 Atomic orbital electron populations 1.21947 0.96780 1.00135 1.00517 1.18400 0.92235 0.91381 0.81072 0.95522 1.21640 1.31725 1.13128 0.91594 0.92596 1.25583 0.95208 0.95702 1.01485 1.69952 1.37174 1.23525 1.24370 0.85704 0.78429 0.79071 0.78976 1.20614 1.20693 1.19201 1.57533 1.69982 1.21128 1.35243 1.21444 1.00512 0.80657 1.02552 1.01184 0.73476 0.72415 0.72404 1.93545 1.75296 1.57346 1.73813 1.93507 1.70564 1.60612 1.74803 1.55647 1.56764 1.51408 1.23788 1.21417 0.92312 0.88950 0.97418 1.22213 0.98365 0.95357 0.95125 0.88676 1.22470 0.96309 0.98617 0.99377 1.22891 0.97239 0.95816 0.93181 1.64754 1.16046 1.08267 1.36831 1.22562 0.90467 1.00190 1.00177 1.23336 0.94924 0.94549 0.96126 0.94227 0.91505 0.94280 0.92644 0.91489 0.91074 0.91067 0.74029 0.91333 0.91726 0.91032 0.89643 0.93348 0.89462 0.90467 0.90725 0.95393 0.89173 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.97 71.98 0.65 -5.13 16 2 C 0.27 13.07 2.62 44.25 0.12 13.19 16 3 H 0.03 1.45 6.91 -2.39 -0.02 1.44 16 4 C -0.54 -28.95 7.99 25.60 0.20 -28.74 16 5 H 0.06 2.98 7.33 -2.91 -0.02 2.96 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.24 11.32 21.45 0.24 -49.99 16 8 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 12 N -1.00 -39.96 3.12 -520.42 -1.62 -41.59 16 13 C 0.09 3.16 9.65 127.77 1.23 4.40 16 14 S 2.80 106.73 6.14 -56.49 -0.35 106.39 16 15 O -1.02 -47.81 16.17 -128.00 -2.07 -49.88 16 16 O -1.01 -40.50 16.74 -128.00 -2.14 -42.65 16 17 N -1.11 -30.52 6.00 -187.49 -1.13 -31.65 16 18 C 0.13 3.31 5.56 86.38 0.48 3.79 16 19 C -0.09 -1.84 3.13 -9.59 -0.03 -1.87 16 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 21 C -0.13 -2.40 6.51 31.47 0.20 -2.20 16 22 C 0.04 0.62 6.70 86.44 0.58 1.20 16 23 N -0.53 -9.81 5.55 -909.16 -5.05 -14.86 16 24 C 0.01 0.22 9.40 127.69 1.20 1.42 16 25 C 0.04 0.72 5.76 86.65 0.50 1.22 16 26 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 27 H 0.07 3.25 6.07 -2.39 -0.01 3.24 16 28 H 0.04 1.41 6.18 -2.39 -0.01 1.39 16 29 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.26 7.02 -2.38 -0.02 2.24 16 32 H 0.07 2.56 7.02 -2.39 -0.02 2.55 16 33 H 0.42 9.10 8.49 -96.75 -0.82 8.28 16 34 H 0.07 1.85 6.03 -2.39 -0.01 1.83 16 35 H 0.06 1.96 7.75 -2.39 -0.02 1.94 16 36 H 0.07 1.41 7.85 -2.39 -0.02 1.39 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.05 0.80 7.73 -2.39 -0.02 0.78 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 0.43 8.00 -2.39 -0.02 0.41 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 Total: -1.00 -66.65 354.62 -4.34 -70.99 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.17 Total: 19.51 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.58 Total: -11.19 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -7.55 Total: -138.08 kcal Atomic # 8 Polarization: -88.32 SS G_CDS: -4.21 Total: -92.53 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 106.73 SS G_CDS: -0.35 Total: 106.39 kcal Total: -66.65 -4.34 -70.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424186502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.290 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds