Wall clock time and date at job start Tue Mar 31 2020 09:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47301 * 2 1 4 4 C 1.53001 * 109.47071 * 239.99441 * 2 1 3 5 5 C 1.50706 * 109.46964 * 65.00394 * 4 2 1 6 6 H 1.07996 * 119.99474 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00200 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00205 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46991 * 90.00148 * 9 7 5 11 11 H 1.48501 * 109.47327 * 209.99983 * 9 7 5 12 12 H 1.48502 * 109.47083 * 330.00320 * 9 7 5 13 13 C 1.53005 * 109.46938 * 119.99795 * 2 1 3 14 14 N 1.46898 * 109.47290 * 296.47107 * 13 2 1 15 15 C 1.46977 * 110.99709 * 293.83658 * 14 13 2 16 16 C 1.51261 * 111.66943 * 142.84481 * 15 14 13 17 17 H 1.09003 * 108.19614 * 309.37293 * 16 15 14 18 18 C 1.53007 * 108.19716 * 192.50516 * 16 15 14 19 19 C 1.51740 * 115.74078 * 70.94251 * 16 15 14 20 20 S 1.82295 * 109.50385 * 291.32016 * 19 16 15 21 21 C 1.77605 * 100.88285 * 78.97218 * 20 19 16 22 22 C 1.38314 * 120.27793 * 114.16935 * 21 20 19 23 23 C 1.38558 * 119.15214 * 178.93380 * 22 21 20 24 24 C 1.38259 * 119.96691 * 0.02562 * 23 22 21 25 25 C 1.38278 * 120.67270 * 0.30513 * 24 23 22 26 26 C 1.38163 * 118.38012 * 293.67112 * 21 20 19 27 27 H 1.08996 * 109.46995 * 64.85016 * 1 2 3 28 28 H 1.08997 * 109.46955 * 184.84614 * 1 2 3 29 29 H 1.08998 * 109.47084 * 304.84800 * 1 2 3 30 30 H 1.09004 * 109.46845 * 184.99912 * 4 2 1 31 31 H 1.08991 * 109.47361 * 305.00258 * 4 2 1 32 32 H 0.96998 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47018 * 176.46962 * 13 2 1 34 34 H 1.08997 * 109.47118 * 56.47254 * 13 2 1 35 35 H 1.08994 * 109.04106 * 22.28262 * 15 14 13 36 36 H 1.08997 * 109.04218 * 263.40802 * 15 14 13 37 37 H 1.09004 * 109.47166 * 56.94614 * 18 16 15 38 38 H 1.08998 * 109.46916 * 296.94597 * 18 16 15 39 39 H 1.08996 * 109.47335 * 176.94516 * 18 16 15 40 40 H 1.09000 * 109.46028 * 51.49295 * 19 16 15 41 41 H 1.09000 * 109.46074 * 171.45108 * 19 16 15 42 42 H 1.08000 * 120.42283 * 358.90735 * 22 21 20 43 43 H 1.08002 * 120.01370 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.66548 * 180.27840 * 24 23 22 45 45 H 1.08008 * 120.16662 * 179.90043 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 2.6772 -1.5184 -3.8510 9 14 1.4985 0.5624 -5.2497 10 1 2.5633 1.5427 -5.5823 11 1 1.3123 -0.3717 -6.3890 12 1 0.2268 1.2829 -4.9872 13 6 2.0400 -0.7212 1.2493 14 7 1.6212 0.0187 2.4472 15 6 2.2784 1.3318 2.5117 16 6 1.3513 2.3941 3.0594 17 1 0.4145 2.3476 2.5041 18 6 1.9877 3.7618 2.8035 19 6 1.0309 2.2899 4.5390 20 16 0.0028 0.8143 4.8366 21 6 1.2348 -0.4646 4.8057 22 6 1.5186 -1.1873 5.9503 23 6 2.4683 -2.1947 5.8944 24 6 3.1184 -2.4656 4.7046 25 6 2.8363 -1.7358 3.5645 26 6 1.8865 -0.7200 3.6145 27 1 -0.3633 0.4367 -0.9302 28 1 -0.3633 -1.0240 0.0868 29 1 -0.3633 0.5872 0.8434 30 1 3.1264 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 2.9251 -1.8410 -4.7316 33 1 3.1281 -0.7764 1.2183 34 1 1.6259 -1.7290 1.2815 35 1 2.5965 1.6198 1.5098 36 1 3.1554 1.2593 3.1548 37 1 2.1770 3.8805 1.7366 38 1 2.9283 3.8328 3.3496 39 1 1.3110 4.5465 3.1419 40 1 1.9580 2.2102 5.1066 41 1 0.4865 3.1794 4.8561 42 1 1.0068 -0.9689 6.8760 43 1 2.7010 -2.7676 6.7799 44 1 3.8546 -3.2549 4.6654 45 1 3.3503 -1.9532 2.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462303311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:46 Heat of formation + Delta-G solvation = 18.929487 kcal Electronic energy + Delta-G solvation = -23402.027673 eV Core-core repulsion = 20316.907809 eV Total energy + Delta-G solvation = -3085.119864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18170 -37.60038 -35.63776 -34.01246 -32.06132 -31.05974 -29.53945 -27.40236 -27.08809 -26.45028 -24.85020 -23.16011 -22.44815 -21.19519 -20.23336 -18.92835 -17.69174 -16.69476 -16.38986 -15.51186 -15.32593 -15.04624 -14.91841 -14.42495 -14.08703 -13.90778 -13.83912 -13.33543 -13.08561 -12.65730 -12.62419 -12.33031 -12.11229 -12.01592 -11.83253 -11.49208 -11.29575 -11.18207 -10.98278 -10.86706 -10.86118 -10.65699 -10.32326 -10.28521 -10.17948 -9.66725 -9.31387 -9.08945 -9.01494 -8.96662 -8.34517 -7.92689 -7.50204 -5.99493 -4.00649 1.02841 1.27767 1.87907 2.58471 3.31757 3.38521 3.41796 3.61120 3.83121 4.46795 4.57475 4.75616 4.87289 4.93382 5.05604 5.18259 5.30179 5.31611 5.34511 5.37200 5.49026 5.55105 5.56742 5.62915 5.66129 5.79976 5.82380 5.97037 6.05646 6.08663 6.18053 6.22623 6.25992 6.38129 6.40701 6.51727 6.65194 6.74242 6.96531 7.08844 7.20968 7.28534 7.40733 7.65901 7.81300 8.00095 8.43722 9.05390 9.62941 11.12050 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.003985 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.669151 B = 7024.462124 C = 7999.026839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.059 3.941 14 N -0.483 5.483 15 C 0.062 3.938 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.148 4.148 19 C -0.084 4.084 20 S -0.149 6.149 21 C -0.109 4.109 22 C -0.063 4.063 23 C -0.147 4.147 24 C -0.086 4.086 25 C -0.168 4.168 26 C 0.142 3.858 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.012 0.988 31 H 0.017 0.983 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 4.435 20.500 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.067 4.067 14 N -0.199 5.199 15 C -0.064 4.064 16 C -0.111 4.111 17 H 0.109 0.891 18 C -0.208 4.208 19 C -0.232 4.232 20 S 0.088 5.912 21 C -0.223 4.223 22 C -0.085 4.085 23 C -0.167 4.167 24 C -0.105 4.105 25 C -0.190 4.190 26 C 0.042 3.958 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.419 4.425 20.451 20.973 hybrid contribution 1.943 0.155 -1.150 2.263 sum 0.524 4.580 19.301 19.844 Atomic orbital electron populations 1.21593 0.95402 1.00542 1.00552 1.21274 0.96327 0.98886 0.93353 0.92451 1.19115 0.95852 0.95667 0.90320 1.21202 1.34635 1.08303 0.90894 0.92533 1.25005 0.95317 0.95055 0.99074 1.69962 1.39051 1.21213 1.23409 0.86639 0.78949 0.79816 0.82886 1.20778 1.21291 1.19846 1.22567 0.97806 0.97820 0.88545 1.59553 1.56675 1.03288 1.00362 1.21928 0.94372 0.87585 1.02470 1.20848 1.01193 0.94677 0.94360 0.89124 1.21940 1.00537 0.95914 1.02385 1.23468 1.01998 0.98365 0.99320 1.85753 1.13110 0.98967 1.93399 1.21049 1.02765 1.03517 0.94952 1.21214 0.95949 0.94686 0.96648 1.21162 0.98363 0.99090 0.98124 1.21153 0.98581 0.98231 0.92529 1.21883 0.98334 0.99077 0.99736 1.19116 0.92260 0.94214 0.90189 0.92480 0.94230 0.93795 0.96950 0.96488 0.93089 0.94384 0.90572 0.88719 0.94255 0.91786 0.92910 0.92347 0.90272 0.87720 0.85050 0.85791 0.85957 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.58 2.25 -90.62 -0.20 -1.79 16 3 H 0.06 1.14 6.26 -51.93 -0.32 0.81 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.09 8.34 -34.44 -0.29 -14.38 16 6 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.06 1.00 3.00 -3.82 -0.01 0.99 16 14 N -0.48 -7.36 3.56 -171.92 -0.61 -7.97 16 15 C 0.06 0.84 4.38 -4.66 -0.02 0.82 16 16 C -0.09 -1.06 2.33 -92.13 -0.22 -1.27 16 17 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 18 C -0.15 -1.44 8.96 37.16 0.33 -1.11 16 19 C -0.08 -0.91 5.44 36.52 0.20 -0.71 16 20 S -0.15 -1.96 21.52 -107.50 -2.31 -4.28 16 21 C -0.11 -1.49 5.62 -39.58 -0.22 -1.72 16 22 C -0.06 -0.73 9.85 -39.44 -0.39 -1.12 16 23 C -0.15 -1.54 10.06 -39.46 -0.40 -1.94 16 24 C -0.09 -0.97 10.01 -39.56 -0.40 -1.37 16 25 C -0.17 -2.27 8.88 -39.23 -0.35 -2.62 16 26 C 0.14 2.07 4.83 -83.49 -0.40 1.67 16 27 H 0.06 1.20 6.82 -51.93 -0.35 0.84 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.79 7.85 -51.93 -0.41 0.38 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.04 0.64 7.03 -51.93 -0.37 0.27 16 34 H 0.08 1.36 7.75 -51.93 -0.40 0.95 16 35 H 0.09 1.36 5.61 -51.93 -0.29 1.07 16 36 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 37 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 45 H 0.13 1.80 6.00 -52.48 -0.31 1.48 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -29.75 359.50 -11.47 -41.22 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.42 Total: -0.39 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.25 Total: -24.55 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.12 Total: -33.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.31 Total: -4.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.75 -11.47 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.152 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds