Wall clock time and date at job start Tue Mar 31 2020 09:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47301 * 2 1 4 4 C 1.53001 * 109.47071 * 239.99441 * 2 1 3 5 5 C 1.50706 * 109.46964 * 65.00394 * 4 2 1 6 6 H 1.07996 * 119.99474 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00200 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00205 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46991 * 90.00148 * 9 7 5 11 11 H 1.48501 * 109.47327 * 209.99983 * 9 7 5 12 12 H 1.48502 * 109.47083 * 330.00320 * 9 7 5 13 13 C 1.53005 * 109.46938 * 119.99795 * 2 1 3 14 14 N 1.46898 * 109.47290 * 296.47107 * 13 2 1 15 15 C 1.46977 * 110.99709 * 293.83658 * 14 13 2 16 16 C 1.51261 * 111.66943 * 142.84481 * 15 14 13 17 17 H 1.09003 * 108.19614 * 309.37293 * 16 15 14 18 18 C 1.53007 * 108.19716 * 192.50516 * 16 15 14 19 19 C 1.51740 * 115.74078 * 70.94251 * 16 15 14 20 20 S 1.82295 * 109.50385 * 291.32016 * 19 16 15 21 21 C 1.77605 * 100.88285 * 78.97218 * 20 19 16 22 22 C 1.38314 * 120.27793 * 114.16935 * 21 20 19 23 23 C 1.38558 * 119.15214 * 178.93380 * 22 21 20 24 24 C 1.38259 * 119.96691 * 0.02562 * 23 22 21 25 25 C 1.38278 * 120.67270 * 0.30513 * 24 23 22 26 26 C 1.38163 * 118.38012 * 293.67112 * 21 20 19 27 27 H 1.08996 * 109.46995 * 64.85016 * 1 2 3 28 28 H 1.08997 * 109.46955 * 184.84614 * 1 2 3 29 29 H 1.08998 * 109.47084 * 304.84800 * 1 2 3 30 30 H 1.09004 * 109.46845 * 184.99912 * 4 2 1 31 31 H 1.08991 * 109.47361 * 305.00258 * 4 2 1 32 32 H 0.96998 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47018 * 176.46962 * 13 2 1 34 34 H 1.08997 * 109.47118 * 56.47254 * 13 2 1 35 35 H 1.08994 * 109.04106 * 22.28262 * 15 14 13 36 36 H 1.08997 * 109.04218 * 263.40802 * 15 14 13 37 37 H 1.09004 * 109.47166 * 56.94614 * 18 16 15 38 38 H 1.08998 * 109.46916 * 296.94597 * 18 16 15 39 39 H 1.08996 * 109.47335 * 176.94516 * 18 16 15 40 40 H 1.09000 * 109.46028 * 51.49295 * 19 16 15 41 41 H 1.09000 * 109.46074 * 171.45108 * 19 16 15 42 42 H 1.08000 * 120.42283 * 358.90735 * 22 21 20 43 43 H 1.08002 * 120.01370 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.66548 * 180.27840 * 24 23 22 45 45 H 1.08008 * 120.16662 * 179.90043 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 2.6772 -1.5184 -3.8510 9 14 1.4985 0.5624 -5.2497 10 1 2.5633 1.5427 -5.5823 11 1 1.3123 -0.3717 -6.3890 12 1 0.2268 1.2829 -4.9872 13 6 2.0400 -0.7212 1.2493 14 7 1.6212 0.0187 2.4472 15 6 2.2784 1.3318 2.5117 16 6 1.3513 2.3941 3.0594 17 1 0.4145 2.3476 2.5041 18 6 1.9877 3.7618 2.8035 19 6 1.0309 2.2899 4.5390 20 16 0.0028 0.8143 4.8366 21 6 1.2348 -0.4646 4.8057 22 6 1.5186 -1.1873 5.9503 23 6 2.4683 -2.1947 5.8944 24 6 3.1184 -2.4656 4.7046 25 6 2.8363 -1.7358 3.5645 26 6 1.8865 -0.7200 3.6145 27 1 -0.3633 0.4367 -0.9302 28 1 -0.3633 -1.0240 0.0868 29 1 -0.3633 0.5872 0.8434 30 1 3.1264 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 2.9251 -1.8410 -4.7316 33 1 3.1281 -0.7764 1.2183 34 1 1.6259 -1.7290 1.2815 35 1 2.5965 1.6198 1.5098 36 1 3.1554 1.2593 3.1548 37 1 2.1770 3.8805 1.7366 38 1 2.9283 3.8328 3.3496 39 1 1.3110 4.5465 3.1419 40 1 1.9580 2.2102 5.1066 41 1 0.4865 3.1794 4.8561 42 1 1.0068 -0.9689 6.8760 43 1 2.7010 -2.7676 6.7799 44 1 3.8546 -3.2549 4.6654 45 1 3.3503 -1.9532 2.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462303311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:46 Heat of formation + Delta-G solvation = 5.165985 kcal Electronic energy + Delta-G solvation = -23402.624503 eV Core-core repulsion = 20316.907809 eV Total energy + Delta-G solvation = -3085.716695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26032 -38.68516 -36.98620 -35.45808 -33.97544 -32.00927 -30.63388 -28.92917 -28.23115 -27.85299 -26.18124 -24.76801 -23.56841 -22.30945 -21.31599 -20.42896 -18.75465 -18.51301 -17.64969 -16.76714 -16.51409 -16.41075 -15.99023 -15.82771 -15.40622 -15.02529 -14.85038 -14.49679 -14.30369 -14.10051 -14.06384 -13.51996 -13.42808 -13.25296 -12.95802 -12.87935 -12.79213 -12.69919 -12.31850 -12.22875 -12.15726 -12.05396 -11.92563 -11.74481 -11.41367 -11.14867 -11.10713 -10.98288 -10.53149 -10.24113 -9.93357 -9.03043 -8.50218 -8.17600 -6.26373 0.09637 0.32358 0.92264 1.40193 1.41173 1.52113 1.65577 2.41271 2.60241 2.75823 3.16330 3.61283 3.79847 3.93240 3.96499 4.07506 4.17209 4.25319 4.31132 4.40177 4.42324 4.47323 4.50593 4.58968 4.65731 4.70846 4.75251 4.81562 4.87006 4.89564 4.98724 5.10029 5.23375 5.24858 5.28705 5.31907 5.34711 5.44774 5.48882 5.49934 5.54196 5.76053 5.82341 5.87290 5.95717 6.24749 6.31473 6.88888 7.41897 8.94520 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.003985 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.669151 B = 7024.462124 C = 7999.026839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.060 0.940 4 C 0.035 3.965 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.075 3.925 14 N -0.486 5.486 15 C 0.062 3.938 16 C -0.085 4.085 17 H 0.072 0.928 18 C -0.142 4.142 19 C -0.071 4.071 20 S -0.179 6.179 21 C -0.120 4.120 22 C -0.065 4.065 23 C -0.136 4.136 24 C -0.086 4.086 25 C -0.186 4.186 26 C 0.117 3.883 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.060 0.940 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.146 0.854 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 5.601 22.303 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.002 4.002 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.052 4.052 14 N -0.202 5.202 15 C -0.063 4.063 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.202 4.202 19 C -0.219 4.219 20 S 0.058 5.942 21 C -0.233 4.233 22 C -0.087 4.087 23 C -0.156 4.156 24 C -0.105 4.105 25 C -0.208 4.208 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.176 0.824 44 H 0.164 0.836 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.597 5.601 22.275 23.024 hybrid contribution 2.034 -0.262 -1.624 2.616 sum 0.437 5.339 20.651 21.335 Atomic orbital electron populations 1.21460 0.94847 1.00214 1.00351 1.21041 0.96556 0.98565 0.92491 0.92134 1.18976 0.94178 0.94619 0.92460 1.21592 1.34374 1.08555 0.91933 0.92074 1.25906 0.95258 0.96025 1.02526 1.70097 1.40297 1.22919 1.24258 0.85541 0.79040 0.78423 0.78646 1.19816 1.21036 1.18807 1.22196 0.97366 0.97014 0.88601 1.59535 1.57008 1.03706 0.99972 1.21978 0.95018 0.87451 1.01882 1.20775 0.99945 0.95065 0.94809 0.90921 1.21896 1.01293 0.94946 1.02072 1.23492 1.02092 0.97780 0.98518 1.85791 1.14486 1.00500 1.93461 1.21195 1.02771 1.04123 0.95242 1.21542 0.96050 0.94347 0.96712 1.21559 0.96923 0.98327 0.98837 1.21460 0.98827 0.98201 0.92049 1.21932 0.98775 0.99705 1.00385 1.19208 0.93655 0.95084 0.90254 0.94042 0.94929 0.92058 0.99295 0.99306 0.92970 0.94631 0.91746 0.90086 0.93983 0.92669 0.91854 0.90623 0.89532 0.85540 0.83016 0.82389 0.83647 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -2.79 2.25 -10.79 -0.02 -2.81 16 3 H 0.06 2.45 6.26 -2.39 -0.01 2.44 16 4 C 0.04 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -29.60 8.34 25.60 0.21 -29.39 16 6 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.08 2.68 3.00 86.31 0.26 2.93 16 14 N -0.49 -14.97 3.56 -697.84 -2.49 -17.45 16 15 C 0.06 1.67 4.38 85.72 0.38 2.04 16 16 C -0.08 -1.90 2.33 -11.77 -0.03 -1.93 16 17 H 0.07 1.91 8.12 -2.39 -0.02 1.89 16 18 C -0.14 -2.51 8.96 71.98 0.64 -1.86 16 19 C -0.07 -1.41 5.44 71.57 0.39 -1.02 16 20 S -0.18 -4.49 21.52 -56.49 -1.22 -5.71 16 21 C -0.12 -3.13 5.62 22.27 0.13 -3.01 16 22 C -0.07 -1.35 9.85 22.36 0.22 -1.13 16 23 C -0.14 -2.45 10.06 22.35 0.22 -2.23 16 24 C -0.09 -1.79 10.01 22.28 0.22 -1.57 16 25 C -0.19 -4.98 8.88 22.50 0.20 -4.78 16 26 C 0.12 3.39 4.83 37.92 0.18 3.57 16 27 H 0.04 1.75 6.82 -2.39 -0.02 1.73 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 2.21 7.85 -2.39 -0.02 2.19 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.04 1.26 7.03 -2.39 -0.02 1.25 16 34 H 0.06 2.42 7.75 -2.39 -0.02 2.40 16 35 H 0.08 2.37 5.61 -2.39 -0.01 2.36 16 36 H 0.04 1.10 7.68 -2.39 -0.02 1.08 16 37 H 0.05 1.08 8.04 -2.38 -0.02 1.06 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.13 1.95 8.03 -2.39 -0.02 1.93 16 42 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.12 3.45 6.00 -2.91 -0.02 3.43 16 Total: -1.00 -65.24 359.50 3.80 -61.44 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.95 Total: 14.56 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 4.24 Total: -42.53 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -2.20 Total: -74.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -1.22 Total: -5.71 kcal Total: -65.24 3.80 -61.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.604 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds