Wall clock time and date at job start Tue Mar 31 2020 09:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47212 * 119.99918 * 2 1 3 5 5 C 1.50697 * 109.47183 * 295.00128 * 4 2 1 6 6 H 1.07999 * 120.00392 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99962 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47049 * 59.99645 * 9 7 5 11 11 H 1.48495 * 109.47251 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47079 * 299.99941 * 9 7 5 13 13 C 1.53000 * 109.47181 * 240.00469 * 2 1 3 14 14 N 1.46893 * 109.47454 * 59.30301 * 13 2 1 15 15 C 1.46975 * 110.99847 * 55.44129 * 14 13 2 16 16 C 1.51262 * 111.68079 * 217.16603 * 15 14 13 17 17 H 1.08999 * 108.19878 * 50.61043 * 16 15 14 18 18 C 1.52997 * 108.19792 * 167.48174 * 16 15 14 19 19 C 1.51747 * 115.88137 * 289.14740 * 16 15 14 20 20 S 1.82213 * 109.53961 * 68.42380 * 19 16 15 21 21 C 1.77598 * 101.02274 * 281.26896 * 20 19 16 22 22 C 1.38314 * 120.27241 * 245.82350 * 21 20 19 23 23 C 1.38560 * 119.16071 * 180.95977 * 22 21 20 24 24 C 1.38259 * 119.96268 * 359.97438 * 23 22 21 25 25 C 1.38275 * 120.67593 * 359.78803 * 24 23 22 26 26 C 1.38168 * 118.39268 * 66.31522 * 21 20 19 27 27 H 1.09001 * 109.47276 * 306.83075 * 1 2 3 28 28 H 1.08998 * 109.47052 * 66.82625 * 1 2 3 29 29 H 1.09001 * 109.47002 * 186.82816 * 1 2 3 30 30 H 1.08997 * 109.46658 * 55.00050 * 4 2 1 31 31 H 1.09002 * 109.47269 * 174.99915 * 4 2 1 32 32 H 0.96998 * 120.00888 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46447 * 299.30144 * 13 2 1 34 34 H 1.09001 * 109.47129 * 179.30879 * 13 2 1 35 35 H 1.08995 * 109.03632 * 337.73232 * 15 14 13 36 36 H 1.08998 * 109.03682 * 96.59783 * 15 14 13 37 37 H 1.09007 * 109.47162 * 59.99728 * 18 16 15 38 38 H 1.08996 * 109.47437 * 179.97438 * 18 16 15 39 39 H 1.08997 * 109.47328 * 300.00073 * 18 16 15 40 40 H 1.09001 * 109.45407 * 188.44546 * 19 16 15 41 41 H 1.08998 * 109.45907 * 308.41341 * 19 16 15 42 42 H 1.08006 * 120.41616 * 0.97795 * 22 21 20 43 43 H 1.08005 * 120.01208 * 179.70124 * 23 22 21 44 44 H 1.08006 * 119.66278 * 179.79067 * 24 23 22 45 45 H 1.08002 * 120.17280 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9933 -0.4017 3.7282 8 7 2.6765 -1.5187 3.8512 9 14 1.4985 0.5626 5.2497 10 1 0.0185 0.6681 5.3093 11 1 1.9937 -0.1373 6.4621 12 1 2.0896 1.9235 5.1871 13 6 2.0400 -0.7211 -1.2493 14 7 1.5367 -0.0384 -2.4486 15 6 1.9029 1.3849 -2.4371 16 6 0.8014 2.2499 -3.0085 17 1 -0.1318 1.9853 -2.5114 18 6 1.1191 3.7093 -2.6766 19 6 0.5834 2.1411 -4.5063 20 16 -0.0870 0.4947 -4.9066 21 6 1.3848 -0.4969 -4.8386 22 6 1.8749 -1.0968 -5.9844 23 6 3.0135 -1.8820 -5.9013 24 6 3.6445 -2.0565 -4.6836 25 6 3.1538 -1.4508 -3.5415 26 6 2.0128 -0.6578 -3.6185 27 1 -0.3634 0.6160 0.8225 28 1 -0.3633 0.4044 -0.9447 29 1 -0.3633 -1.0204 0.1222 30 1 1.6054 -1.7197 1.2951 31 1 3.1264 -0.7995 1.2056 32 1 2.9244 -1.8413 4.7317 33 1 1.6869 -1.7524 -1.2430 34 1 3.1300 -0.7104 -1.2555 35 1 2.1004 1.6929 -1.4104 36 1 2.8075 1.5241 -3.0289 37 1 2.0773 3.9822 -3.1187 38 1 0.3369 4.3523 -3.0801 39 1 1.1696 3.8332 -1.5949 40 1 -0.1215 2.9081 -4.8272 41 1 1.5329 2.2817 -5.0226 42 1 1.3764 -0.9549 -6.9320 43 1 3.4053 -2.3609 -6.7866 44 1 4.5299 -2.6723 -4.6237 45 1 3.6530 -1.5930 -2.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462303323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:49 Heat of formation + Delta-G solvation = 24.238134 kcal Electronic energy + Delta-G solvation = -23446.197513 eV Core-core repulsion = 20361.307849 eV Total energy + Delta-G solvation = -3084.889664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21361 -37.66333 -35.59274 -34.01333 -32.07939 -31.06067 -29.50243 -27.39708 -27.04703 -26.56890 -24.83609 -23.16345 -22.44989 -21.18349 -20.33064 -18.84179 -17.70651 -16.68896 -16.42800 -15.53685 -15.32371 -15.03610 -14.93369 -14.42695 -14.19372 -13.90295 -13.77638 -13.31956 -13.09307 -12.64599 -12.54908 -12.34566 -12.12457 -12.03644 -11.85253 -11.44703 -11.29808 -11.19302 -10.95632 -10.93590 -10.85735 -10.66612 -10.31844 -10.28700 -10.16533 -9.64549 -9.32312 -9.06439 -9.02262 -8.96432 -8.34832 -7.91953 -7.50265 -5.99847 -4.01332 1.03005 1.28110 1.87863 2.59122 3.32795 3.37596 3.39695 3.61669 3.84161 4.46129 4.58409 4.76465 4.87515 4.94096 5.06168 5.17788 5.30339 5.31952 5.35343 5.37047 5.50021 5.56493 5.58027 5.63608 5.67562 5.77475 5.80704 5.96915 6.06757 6.08883 6.18511 6.23764 6.26663 6.38685 6.41540 6.49614 6.61985 6.74166 6.95874 7.08871 7.16819 7.27338 7.40818 7.64304 7.79898 7.99271 8.42664 9.04424 9.62299 11.11622 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.004000 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.320954 B = 6998.231318 C = 8022.878872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 H 0.059 0.941 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.482 5.482 15 C 0.055 3.945 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.148 4.148 19 C -0.084 4.084 20 S -0.149 6.149 21 C -0.109 4.109 22 C -0.063 4.063 23 C -0.147 4.147 24 C -0.085 4.085 25 C -0.170 4.170 26 C 0.142 3.858 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.017 0.983 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 4.941 -20.228 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.008 4.008 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.069 4.069 14 N -0.198 5.198 15 C -0.070 4.070 16 C -0.111 4.111 17 H 0.109 0.891 18 C -0.208 4.208 19 C -0.232 4.232 20 S 0.087 5.913 21 C -0.223 4.223 22 C -0.085 4.085 23 C -0.167 4.167 24 C -0.105 4.105 25 C -0.192 4.192 26 C 0.042 3.958 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.800 4.563 -20.278 20.863 hybrid contribution 1.919 0.605 1.270 2.379 sum 0.119 5.168 -19.007 19.698 Atomic orbital electron populations 1.21613 0.95305 1.01191 1.00110 1.21368 0.96439 0.98759 0.93673 0.92321 1.19112 0.95885 0.95637 0.90214 1.21155 1.34794 1.08313 0.90914 0.92640 1.25000 0.95274 0.95061 0.99059 1.69945 1.38934 1.21180 1.23534 0.86701 0.78957 0.80075 0.82531 1.20235 1.21358 1.20327 1.22562 0.97215 0.98821 0.88344 1.59587 1.57283 1.02576 1.00377 1.22034 0.95798 0.86026 1.03103 1.20852 1.01199 0.95155 0.93855 0.89142 1.21937 1.01381 0.95150 1.02311 1.23470 1.04022 0.96559 0.99142 1.85712 1.11399 1.03214 1.90965 1.21049 1.00409 1.06326 0.94483 1.21214 0.94834 0.95601 0.96853 1.21167 0.96828 1.00895 0.97859 1.21153 0.99223 0.97683 0.92404 1.21905 0.96017 1.01389 0.99859 1.19111 0.91122 0.95168 0.90394 0.92997 0.93383 0.93831 0.96419 0.96934 0.93010 0.90403 0.94265 0.88107 0.94342 0.92908 0.92379 0.91763 0.87702 0.90312 0.85056 0.85793 0.85959 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.83 37.16 0.33 -2.07 16 2 C -0.08 -1.65 2.04 -90.62 -0.18 -1.83 16 3 H 0.06 1.14 5.84 -51.93 -0.30 0.84 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.08 8.49 -34.44 -0.29 -14.37 16 6 H 0.06 1.48 7.07 -52.49 -0.37 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 0.97 3.48 -3.83 -0.01 0.95 16 14 N -0.48 -7.35 3.26 -171.92 -0.56 -7.91 16 15 C 0.06 0.76 4.35 -4.66 -0.02 0.74 16 16 C -0.09 -1.06 2.33 -92.13 -0.21 -1.27 16 17 H 0.09 1.22 7.51 -51.93 -0.39 0.83 16 18 C -0.15 -1.46 8.96 37.16 0.33 -1.12 16 19 C -0.08 -0.92 5.45 36.52 0.20 -0.72 16 20 S -0.15 -1.97 21.51 -107.50 -2.31 -4.28 16 21 C -0.11 -1.50 5.63 -39.58 -0.22 -1.72 16 22 C -0.06 -0.74 9.85 -39.43 -0.39 -1.12 16 23 C -0.15 -1.55 10.06 -39.45 -0.40 -1.95 16 24 C -0.09 -0.97 10.01 -39.56 -0.40 -1.37 16 25 C -0.17 -2.30 9.04 -39.22 -0.35 -2.65 16 26 C 0.14 2.07 4.86 -83.48 -0.41 1.67 16 27 H 0.05 1.04 7.16 -51.93 -0.37 0.67 16 28 H 0.05 0.84 6.73 -51.93 -0.35 0.49 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.04 0.65 6.32 -51.93 -0.33 0.33 16 35 H 0.10 1.47 4.99 -51.93 -0.26 1.21 16 36 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.01 -51.93 -0.42 0.08 16 39 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.10 0.96 7.98 -51.93 -0.41 0.55 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.14 1.84 5.75 -52.49 -0.30 1.53 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -29.63 356.64 -11.30 -40.92 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.26 Total: 0.07 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -2.25 Total: -24.72 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.18 Total: -33.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -2.31 Total: -4.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.63 -11.30 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.161 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds