Wall clock time and date at job start Tue Mar 31 2020 09:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53001 * 109.47212 * 119.99918 * 2 1 3 5 5 C 1.50697 * 109.47183 * 295.00128 * 4 2 1 6 6 H 1.07999 * 120.00392 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99962 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00392 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47049 * 59.99645 * 9 7 5 11 11 H 1.48495 * 109.47251 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47079 * 299.99941 * 9 7 5 13 13 C 1.53000 * 109.47181 * 240.00469 * 2 1 3 14 14 N 1.46893 * 109.47454 * 59.30301 * 13 2 1 15 15 C 1.46975 * 110.99847 * 55.44129 * 14 13 2 16 16 C 1.51262 * 111.68079 * 217.16603 * 15 14 13 17 17 H 1.08999 * 108.19878 * 50.61043 * 16 15 14 18 18 C 1.52997 * 108.19792 * 167.48174 * 16 15 14 19 19 C 1.51747 * 115.88137 * 289.14740 * 16 15 14 20 20 S 1.82213 * 109.53961 * 68.42380 * 19 16 15 21 21 C 1.77598 * 101.02274 * 281.26896 * 20 19 16 22 22 C 1.38314 * 120.27241 * 245.82350 * 21 20 19 23 23 C 1.38560 * 119.16071 * 180.95977 * 22 21 20 24 24 C 1.38259 * 119.96268 * 359.97438 * 23 22 21 25 25 C 1.38275 * 120.67593 * 359.78803 * 24 23 22 26 26 C 1.38168 * 118.39268 * 66.31522 * 21 20 19 27 27 H 1.09001 * 109.47276 * 306.83075 * 1 2 3 28 28 H 1.08998 * 109.47052 * 66.82625 * 1 2 3 29 29 H 1.09001 * 109.47002 * 186.82816 * 1 2 3 30 30 H 1.08997 * 109.46658 * 55.00050 * 4 2 1 31 31 H 1.09002 * 109.47269 * 174.99915 * 4 2 1 32 32 H 0.96998 * 120.00888 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46447 * 299.30144 * 13 2 1 34 34 H 1.09001 * 109.47129 * 179.30879 * 13 2 1 35 35 H 1.08995 * 109.03632 * 337.73232 * 15 14 13 36 36 H 1.08998 * 109.03682 * 96.59783 * 15 14 13 37 37 H 1.09007 * 109.47162 * 59.99728 * 18 16 15 38 38 H 1.08996 * 109.47437 * 179.97438 * 18 16 15 39 39 H 1.08997 * 109.47328 * 300.00073 * 18 16 15 40 40 H 1.09001 * 109.45407 * 188.44546 * 19 16 15 41 41 H 1.08998 * 109.45907 * 308.41341 * 19 16 15 42 42 H 1.08006 * 120.41616 * 0.97795 * 22 21 20 43 43 H 1.08005 * 120.01208 * 179.70124 * 23 22 21 44 44 H 1.08006 * 119.66278 * 179.79067 * 24 23 22 45 45 H 1.08002 * 120.17280 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9933 -0.4017 3.7282 8 7 2.6765 -1.5187 3.8512 9 14 1.4985 0.5626 5.2497 10 1 0.0185 0.6681 5.3093 11 1 1.9937 -0.1373 6.4621 12 1 2.0896 1.9235 5.1871 13 6 2.0400 -0.7211 -1.2493 14 7 1.5367 -0.0384 -2.4486 15 6 1.9029 1.3849 -2.4371 16 6 0.8014 2.2499 -3.0085 17 1 -0.1318 1.9853 -2.5114 18 6 1.1191 3.7093 -2.6766 19 6 0.5834 2.1411 -4.5063 20 16 -0.0870 0.4947 -4.9066 21 6 1.3848 -0.4969 -4.8386 22 6 1.8749 -1.0968 -5.9844 23 6 3.0135 -1.8820 -5.9013 24 6 3.6445 -2.0565 -4.6836 25 6 3.1538 -1.4508 -3.5415 26 6 2.0128 -0.6578 -3.6185 27 1 -0.3634 0.6160 0.8225 28 1 -0.3633 0.4044 -0.9447 29 1 -0.3633 -1.0204 0.1222 30 1 1.6054 -1.7197 1.2951 31 1 3.1264 -0.7995 1.2056 32 1 2.9244 -1.8413 4.7317 33 1 1.6869 -1.7524 -1.2430 34 1 3.1300 -0.7104 -1.2555 35 1 2.1004 1.6929 -1.4104 36 1 2.8075 1.5241 -3.0289 37 1 2.0773 3.9822 -3.1187 38 1 0.3369 4.3523 -3.0801 39 1 1.1696 3.8332 -1.5949 40 1 -0.1215 2.9081 -4.8272 41 1 1.5329 2.2817 -5.0226 42 1 1.3764 -0.9549 -6.9320 43 1 3.4053 -2.3609 -6.7866 44 1 4.5299 -2.6723 -4.6237 45 1 3.6530 -1.5930 -2.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462303323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:48 Heat of formation + Delta-G solvation = 10.670725 kcal Electronic energy + Delta-G solvation = -23446.785840 eV Core-core repulsion = 20361.307849 eV Total energy + Delta-G solvation = -3085.477991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30281 -38.75559 -36.91887 -35.45828 -33.98072 -32.01381 -30.62280 -28.86406 -28.24468 -27.94518 -26.16397 -24.77926 -23.56674 -22.29981 -21.45540 -20.28505 -18.76793 -18.52846 -17.65827 -16.81560 -16.49989 -16.43736 -15.98650 -15.84221 -15.45727 -14.98219 -14.86481 -14.48379 -14.19299 -14.09446 -14.07007 -13.56221 -13.45202 -13.26110 -12.94836 -12.88191 -12.76531 -12.73218 -12.32926 -12.23494 -12.16655 -12.03248 -11.93191 -11.74219 -11.37640 -11.14050 -11.06971 -10.95996 -10.52542 -10.22317 -9.93509 -9.02545 -8.50310 -8.17356 -6.26462 0.09437 0.32312 0.91988 1.40384 1.42851 1.50355 1.66002 2.41374 2.60885 2.76106 3.16511 3.61196 3.79995 3.91727 3.97647 4.07537 4.14277 4.26858 4.31929 4.38389 4.42151 4.46897 4.50992 4.57922 4.66442 4.70932 4.76117 4.82934 4.86793 4.89569 5.00249 5.11233 5.24554 5.26178 5.28028 5.32299 5.34501 5.44564 5.49448 5.50523 5.53823 5.76424 5.81790 5.86796 5.95779 6.24574 6.31201 6.88759 7.41916 8.94562 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.004000 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.320954 B = 6998.231318 C = 8022.878872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 H 0.065 0.935 4 C 0.036 3.964 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.072 3.928 14 N -0.485 5.485 15 C 0.056 3.944 16 C -0.085 4.085 17 H 0.074 0.926 18 C -0.143 4.143 19 C -0.072 4.072 20 S -0.178 6.178 21 C -0.120 4.120 22 C -0.065 4.065 23 C -0.136 4.136 24 C -0.086 4.086 25 C -0.187 4.187 26 C 0.117 3.883 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.029 0.971 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.146 0.854 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 6.342 -22.008 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 H 0.083 0.917 4 C -0.002 4.002 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.055 4.055 14 N -0.201 5.201 15 C -0.069 4.069 16 C -0.106 4.106 17 H 0.092 0.908 18 C -0.202 4.202 19 C -0.220 4.220 20 S 0.058 5.942 21 C -0.233 4.233 22 C -0.086 4.086 23 C -0.157 4.157 24 C -0.105 4.105 25 C -0.210 4.210 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.104 0.896 42 H 0.170 0.830 43 H 0.176 0.824 44 H 0.163 0.837 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.990 5.975 -22.079 22.960 hybrid contribution 2.022 0.119 1.733 2.666 sum 0.033 6.094 -20.346 21.239 Atomic orbital electron populations 1.21488 0.94674 1.00201 1.00639 1.21141 0.96741 0.98556 0.92594 0.91733 1.18978 0.94184 0.94574 0.92452 1.21563 1.34498 1.08603 0.91912 0.92006 1.25910 0.95221 0.96031 1.02543 1.70086 1.40238 1.22920 1.24320 0.85599 0.78901 0.78874 0.78287 1.19363 1.21129 1.19098 1.22208 0.96987 0.97819 0.88477 1.59584 1.57458 1.03178 0.99902 1.22070 0.96796 0.85551 1.02447 1.20781 0.99474 0.95938 0.94410 0.90796 1.21896 1.02544 0.93843 1.01951 1.23495 1.04789 0.95400 0.98268 1.85750 1.12309 1.05082 1.91057 1.21200 1.00444 1.06973 0.94727 1.21544 0.95120 0.95002 0.96983 1.21563 0.95856 0.99646 0.98592 1.21460 0.99837 0.97234 0.91986 1.21950 0.96296 1.02261 1.00452 1.19210 0.92206 0.96391 0.90432 0.94007 0.91480 0.95158 0.99356 0.99331 0.92968 0.91882 0.94357 0.89470 0.94179 0.91987 0.90564 0.92612 0.85491 0.89635 0.83008 0.82386 0.83659 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.83 71.98 0.64 -3.77 16 2 C -0.07 -2.92 2.04 -10.79 -0.02 -2.94 16 3 H 0.06 2.56 5.84 -2.39 -0.01 2.55 16 4 C 0.04 1.86 4.45 29.85 0.13 2.00 16 5 C -0.53 -29.53 8.49 25.60 0.22 -29.32 16 6 H 0.06 3.31 7.07 -2.91 -0.02 3.29 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 9 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.07 2.56 3.48 86.30 0.30 2.86 16 14 N -0.48 -14.93 3.26 -697.83 -2.27 -17.20 16 15 C 0.06 1.52 4.35 85.72 0.37 1.89 16 16 C -0.09 -1.90 2.33 -11.77 -0.03 -1.93 16 17 H 0.07 1.91 7.51 -2.39 -0.02 1.90 16 18 C -0.14 -2.52 8.96 71.98 0.64 -1.88 16 19 C -0.07 -1.42 5.45 71.57 0.39 -1.03 16 20 S -0.18 -4.48 21.51 -56.49 -1.22 -5.69 16 21 C -0.12 -3.15 5.63 22.27 0.13 -3.02 16 22 C -0.07 -1.36 9.85 22.36 0.22 -1.14 16 23 C -0.14 -2.47 10.06 22.35 0.22 -2.24 16 24 C -0.09 -1.80 10.01 22.28 0.22 -1.58 16 25 C -0.19 -5.06 9.04 22.50 0.20 -4.85 16 26 C 0.12 3.39 4.86 37.93 0.18 3.57 16 27 H 0.04 1.69 7.16 -2.39 -0.02 1.67 16 28 H 0.07 2.35 6.73 -2.39 -0.02 2.34 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.04 1.35 6.32 -2.39 -0.02 1.34 16 35 H 0.09 2.56 4.99 -2.39 -0.01 2.55 16 36 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.08 1.08 8.01 -2.39 -0.02 1.06 16 39 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.13 1.95 7.98 -2.39 -0.02 1.93 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 44 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.12 3.52 5.75 -2.91 -0.02 3.50 16 Total: -1.00 -65.09 356.64 4.07 -61.03 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.96 Total: 15.22 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.29 Total: -42.89 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.99 Total: -73.93 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -1.22 Total: -5.69 kcal Total: -65.09 4.07 -61.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.696 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds