Wall clock time and date at job start Tue Mar 31 2020 09:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47428 * 2 1 4 4 C 1.53000 * 109.47163 * 239.99960 * 2 1 3 5 5 C 1.50700 * 109.47074 * 65.00252 * 4 2 1 6 6 H 1.07995 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00146 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46927 * 60.00518 * 9 7 5 11 11 H 1.48500 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47114 * 300.00399 * 9 7 5 13 13 C 1.53002 * 109.46960 * 120.00282 * 2 1 3 14 14 N 1.46903 * 109.46815 * 294.55508 * 13 2 1 15 15 C 1.46982 * 111.00181 * 284.82807 * 14 13 2 16 16 C 1.51270 * 111.64320 * 330.06490 * 15 14 13 17 17 H 1.08999 * 108.20138 * 50.93882 * 16 15 14 18 18 C 1.53006 * 108.19922 * 167.61521 * 16 15 14 19 19 C 1.51742 * 115.87896 * 289.27269 * 16 15 14 20 20 S 1.82213 * 109.56739 * 68.46289 * 19 16 15 21 21 C 1.77612 * 101.02156 * 281.17443 * 20 19 16 22 22 C 1.38291 * 120.31632 * 245.91522 * 21 20 19 23 23 C 1.38566 * 119.14947 * 180.58456 * 22 21 20 24 24 C 1.38264 * 119.94976 * 359.65350 * 23 22 21 25 25 C 1.38267 * 120.68904 * 0.33922 * 24 23 22 26 26 C 1.38192 * 118.30887 * 66.14438 * 21 20 19 27 27 H 1.08999 * 109.46781 * 54.73336 * 1 2 3 28 28 H 1.08997 * 109.47070 * 174.73373 * 1 2 3 29 29 H 1.08996 * 109.47077 * 294.74036 * 1 2 3 30 30 H 1.09002 * 109.46905 * 185.00550 * 4 2 1 31 31 H 1.09000 * 109.47031 * 305.00185 * 4 2 1 32 32 H 0.96999 * 120.00017 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47493 * 174.55821 * 13 2 1 34 34 H 1.08997 * 109.47252 * 54.55466 * 13 2 1 35 35 H 1.08995 * 109.04102 * 90.62233 * 15 14 13 36 36 H 1.08999 * 109.04108 * 209.50771 * 15 14 13 37 37 H 1.09000 * 109.46789 * 59.99656 * 18 16 15 38 38 H 1.08998 * 109.47209 * 179.97438 * 18 16 15 39 39 H 1.08995 * 109.46655 * 300.00018 * 18 16 15 40 40 H 1.09002 * 109.45259 * 188.49015 * 19 16 15 41 41 H 1.08997 * 109.45381 * 308.45147 * 19 16 15 42 42 H 1.08000 * 120.42177 * 0.56556 * 22 21 20 43 43 H 1.08000 * 120.02283 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.65554 * 180.08157 * 24 23 22 45 45 H 1.08002 * 120.15925 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0801 0.9741 -2.3757 7 6 1.9933 -0.4016 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4986 0.5627 -5.2496 10 1 2.0898 1.9235 -5.1870 11 1 1.9937 -0.1372 -6.4621 12 1 0.0186 0.6683 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6605 0.0429 2.4451 15 6 2.5058 1.2356 2.5982 16 6 3.8884 1.0168 2.0250 17 1 3.7797 0.6314 1.0113 18 6 4.5906 2.3736 1.9399 19 6 4.7839 0.0676 2.7994 20 16 4.1324 -1.6290 2.6690 21 6 2.8126 -1.5782 3.8564 22 6 2.8759 -2.3476 5.0038 23 6 1.8270 -2.2986 5.9080 24 6 0.7393 -1.4819 5.6598 25 6 0.6807 -0.7143 4.5113 26 6 1.7302 -0.7586 3.5985 27 1 -0.3633 0.5934 -0.8391 28 1 -0.3633 -1.0233 -0.0943 29 1 -0.3633 0.4301 0.9333 30 1 3.1264 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 2.9238 -1.8417 -4.7317 33 1 3.1256 -0.8065 1.2019 34 1 1.5992 -1.7169 1.2993 35 1 2.0355 2.0732 2.0831 36 1 2.5938 1.4754 3.6579 37 1 4.6627 2.8085 2.9368 38 1 5.5912 2.2397 1.5290 39 1 4.0181 3.0390 1.2937 40 1 5.7923 0.1021 2.3869 41 1 4.8099 0.3667 3.8473 42 1 3.7317 -2.9788 5.1924 43 1 1.8616 -2.8940 6.8084 44 1 -0.0750 -1.4464 6.3684 45 1 -0.1733 -0.0796 4.3259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462303348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:51 Heat of formation + Delta-G solvation = 36.053354 kcal Electronic energy + Delta-G solvation = -23800.696437 eV Core-core repulsion = 20716.319120 eV Total energy + Delta-G solvation = -3084.377318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30073 -37.94631 -35.01495 -33.85282 -31.98539 -31.05856 -29.48442 -27.63028 -26.91785 -26.24134 -24.84097 -23.04431 -22.53834 -21.55209 -19.85823 -18.62971 -17.69437 -16.89328 -16.22401 -15.70652 -15.39556 -15.01164 -14.88864 -14.40192 -14.15619 -13.71132 -13.59871 -13.27818 -12.91187 -12.60416 -12.50770 -12.20064 -12.02592 -11.90168 -11.88512 -11.45258 -11.32104 -11.14523 -11.08876 -10.80489 -10.71797 -10.54458 -10.28204 -10.22462 -10.05464 -9.56043 -9.15854 -9.00674 -8.91971 -8.81145 -8.25876 -8.21938 -6.98052 -5.90650 -3.91578 0.94672 1.26595 1.75123 2.49501 3.37782 3.42274 3.44613 3.62055 4.03521 4.53490 4.55455 4.77059 4.84728 4.91291 5.10593 5.21068 5.25034 5.32893 5.44461 5.44876 5.53716 5.56178 5.60621 5.79580 5.83375 5.91308 6.04327 6.08918 6.15177 6.15723 6.30192 6.34524 6.35874 6.37406 6.53266 6.71134 6.73306 6.82852 7.09106 7.19087 7.28773 7.43526 7.56349 7.79065 7.96260 8.11026 8.54658 9.14944 9.71236 11.20658 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.004271 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.894030 B = 6554.591153 C = 6883.251217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.031 3.969 5 C -0.511 4.511 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.026 3.974 14 N -0.490 5.490 15 C 0.068 3.932 16 C -0.142 4.142 17 H 0.107 0.893 18 C -0.140 4.140 19 C -0.085 4.085 20 S -0.151 6.151 21 C -0.136 4.136 22 C -0.070 4.070 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.106 4.106 26 C 0.131 3.869 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.013 0.987 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 3.005 20.605 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.007 4.007 5 C -0.549 4.549 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.102 4.102 14 N -0.209 5.209 15 C -0.058 4.058 16 C -0.164 4.164 17 H 0.125 0.875 18 C -0.200 4.200 19 C -0.233 4.233 20 S 0.087 5.913 21 C -0.250 4.250 22 C -0.091 4.091 23 C -0.156 4.156 24 C -0.119 4.119 25 C -0.127 4.127 26 C 0.033 3.967 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.798 2.161 19.668 19.868 hybrid contribution 0.049 1.014 -0.084 1.018 sum 1.847 3.175 19.584 19.926 Atomic orbital electron populations 1.21602 0.96303 1.00521 0.99679 1.21196 0.95549 0.98867 0.93900 0.92866 1.19082 0.95907 0.95463 0.90229 1.21203 1.34451 1.08218 0.91028 0.92757 1.25003 0.95425 0.95076 0.98948 1.69966 1.39117 1.21179 1.23329 0.86737 0.78888 0.80114 0.82715 1.20380 1.21430 1.20339 1.23479 1.03086 0.96002 0.87583 1.60803 1.52278 1.06983 1.00803 1.21888 0.90019 0.93480 1.00426 1.21528 0.95242 0.96268 1.03323 0.87477 1.21841 1.00664 0.96011 1.01506 1.23558 1.02298 0.93710 1.03718 1.86242 1.37272 1.17812 1.49932 1.22260 0.98301 1.05233 0.99159 1.21246 0.98677 0.97426 0.91762 1.21208 0.94361 1.00283 0.99745 1.21208 0.97953 0.95732 0.96966 1.21251 0.98066 0.99989 0.93346 1.19304 0.91700 0.93900 0.91758 0.93155 0.94314 0.94061 0.96892 0.96722 0.93137 0.88910 0.91824 0.89281 0.92216 0.93097 0.92381 0.91736 0.87197 0.89945 0.85208 0.85727 0.85761 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.87 37.16 0.33 -2.16 16 2 C -0.08 -1.58 1.95 -90.62 -0.18 -1.76 16 3 H 0.05 1.11 7.03 -51.93 -0.37 0.74 16 4 C 0.03 0.80 4.45 -27.88 -0.12 0.67 16 5 C -0.51 -14.39 8.47 -34.44 -0.29 -14.69 16 6 H 0.05 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.03 0.47 2.50 -3.82 -0.01 0.46 16 14 N -0.49 -7.56 4.07 -171.91 -0.70 -8.26 16 15 C 0.07 0.92 4.54 -4.65 -0.02 0.89 16 16 C -0.14 -1.87 1.96 -92.13 -0.18 -2.05 16 17 H 0.11 1.76 5.02 -51.93 -0.26 1.50 16 18 C -0.14 -1.53 8.96 37.16 0.33 -1.20 16 19 C -0.09 -1.05 5.45 36.52 0.20 -0.85 16 20 S -0.15 -2.25 18.19 -107.50 -1.96 -4.21 16 21 C -0.14 -1.92 5.50 -39.58 -0.22 -2.14 16 22 C -0.07 -0.83 9.85 -39.44 -0.39 -1.22 16 23 C -0.14 -1.38 10.06 -39.45 -0.40 -1.78 16 24 C -0.10 -1.02 10.01 -39.56 -0.40 -1.42 16 25 C -0.11 -1.31 9.97 -39.23 -0.39 -1.70 16 26 C 0.13 1.89 4.31 -83.49 -0.36 1.53 16 27 H 0.05 1.06 7.11 -51.93 -0.37 0.69 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.74 7.63 -51.93 -0.40 0.34 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.09 1.70 2.56 -23.01 -0.06 1.64 16 34 H 0.06 1.28 7.94 -51.93 -0.41 0.87 16 35 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 36 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.60 8.01 -51.93 -0.42 0.19 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.11 1.22 7.98 -51.93 -0.41 0.81 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -30.57 353.92 -11.03 -41.59 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.23 Total: 1.03 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.19 Total: -25.87 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.04 Total: -34.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -1.96 Total: -4.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.57 -11.03 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.648 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds