Wall clock time and date at job start Tue Mar 31 2020 09:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47428 * 2 1 4 4 C 1.53000 * 109.47163 * 239.99960 * 2 1 3 5 5 C 1.50700 * 109.47074 * 65.00252 * 4 2 1 6 6 H 1.07995 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00146 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99770 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00158 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46927 * 60.00518 * 9 7 5 11 11 H 1.48500 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47114 * 300.00399 * 9 7 5 13 13 C 1.53002 * 109.46960 * 120.00282 * 2 1 3 14 14 N 1.46903 * 109.46815 * 294.55508 * 13 2 1 15 15 C 1.46982 * 111.00181 * 284.82807 * 14 13 2 16 16 C 1.51270 * 111.64320 * 330.06490 * 15 14 13 17 17 H 1.08999 * 108.20138 * 50.93882 * 16 15 14 18 18 C 1.53006 * 108.19922 * 167.61521 * 16 15 14 19 19 C 1.51742 * 115.87896 * 289.27269 * 16 15 14 20 20 S 1.82213 * 109.56739 * 68.46289 * 19 16 15 21 21 C 1.77612 * 101.02156 * 281.17443 * 20 19 16 22 22 C 1.38291 * 120.31632 * 245.91522 * 21 20 19 23 23 C 1.38566 * 119.14947 * 180.58456 * 22 21 20 24 24 C 1.38264 * 119.94976 * 359.65350 * 23 22 21 25 25 C 1.38267 * 120.68904 * 0.33922 * 24 23 22 26 26 C 1.38192 * 118.30887 * 66.14438 * 21 20 19 27 27 H 1.08999 * 109.46781 * 54.73336 * 1 2 3 28 28 H 1.08997 * 109.47070 * 174.73373 * 1 2 3 29 29 H 1.08996 * 109.47077 * 294.74036 * 1 2 3 30 30 H 1.09002 * 109.46905 * 185.00550 * 4 2 1 31 31 H 1.09000 * 109.47031 * 305.00185 * 4 2 1 32 32 H 0.96999 * 120.00017 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47493 * 174.55821 * 13 2 1 34 34 H 1.08997 * 109.47252 * 54.55466 * 13 2 1 35 35 H 1.08995 * 109.04102 * 90.62233 * 15 14 13 36 36 H 1.08999 * 109.04108 * 209.50771 * 15 14 13 37 37 H 1.09000 * 109.46789 * 59.99656 * 18 16 15 38 38 H 1.08998 * 109.47209 * 179.97438 * 18 16 15 39 39 H 1.08995 * 109.46655 * 300.00018 * 18 16 15 40 40 H 1.09002 * 109.45259 * 188.49015 * 19 16 15 41 41 H 1.08997 * 109.45381 * 308.45147 * 19 16 15 42 42 H 1.08000 * 120.42177 * 0.56556 * 22 21 20 43 43 H 1.08000 * 120.02283 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.65554 * 180.08157 * 24 23 22 45 45 H 1.08002 * 120.15925 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0801 0.9741 -2.3757 7 6 1.9933 -0.4016 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4986 0.5627 -5.2496 10 1 2.0898 1.9235 -5.1870 11 1 1.9937 -0.1372 -6.4621 12 1 0.0186 0.6683 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6605 0.0429 2.4451 15 6 2.5058 1.2356 2.5982 16 6 3.8884 1.0168 2.0250 17 1 3.7797 0.6314 1.0113 18 6 4.5906 2.3736 1.9399 19 6 4.7839 0.0676 2.7994 20 16 4.1324 -1.6290 2.6690 21 6 2.8126 -1.5782 3.8564 22 6 2.8759 -2.3476 5.0038 23 6 1.8270 -2.2986 5.9080 24 6 0.7393 -1.4819 5.6598 25 6 0.6807 -0.7143 4.5113 26 6 1.7302 -0.7586 3.5985 27 1 -0.3633 0.5934 -0.8391 28 1 -0.3633 -1.0233 -0.0943 29 1 -0.3633 0.4301 0.9333 30 1 3.1264 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 2.9238 -1.8417 -4.7317 33 1 3.1256 -0.8065 1.2019 34 1 1.5992 -1.7169 1.2993 35 1 2.0355 2.0732 2.0831 36 1 2.5938 1.4754 3.6579 37 1 4.6627 2.8085 2.9368 38 1 5.5912 2.2397 1.5290 39 1 4.0181 3.0390 1.2937 40 1 5.7923 0.1021 2.3869 41 1 4.8099 0.3667 3.8473 42 1 3.7317 -2.9788 5.1924 43 1 1.8616 -2.8940 6.8084 44 1 -0.0750 -1.4464 6.3684 45 1 -0.1733 -0.0796 4.3259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462303348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:51 Heat of formation + Delta-G solvation = 20.471390 kcal Electronic energy + Delta-G solvation = -23801.372122 eV Core-core repulsion = 20716.319120 eV Total energy + Delta-G solvation = -3085.053002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39879 -38.99400 -36.64078 -35.16149 -33.97373 -31.96140 -30.56629 -28.99694 -28.52974 -27.61680 -26.13158 -24.72284 -23.64830 -22.56470 -21.23434 -20.14063 -18.73172 -18.45033 -17.94350 -16.90651 -16.50391 -16.39046 -15.95847 -15.91044 -15.32773 -15.06913 -14.66668 -14.50955 -14.37981 -14.15716 -13.62223 -13.44774 -13.33543 -13.21717 -12.92067 -12.86563 -12.76192 -12.73109 -12.47637 -12.34535 -12.21397 -12.10664 -11.96506 -11.58786 -11.41001 -11.17284 -11.03027 -10.89532 -10.50490 -10.02120 -9.87741 -9.31973 -8.20678 -8.13370 -6.23687 0.01556 0.35103 0.71392 1.40285 1.43473 1.48333 1.51001 2.43388 2.71759 2.88262 3.18745 3.52226 3.77374 3.94530 4.07169 4.15407 4.22188 4.26854 4.37967 4.41137 4.45999 4.54532 4.57314 4.58949 4.66259 4.70521 4.84928 4.90607 5.00499 5.02996 5.06656 5.12002 5.24944 5.31461 5.32361 5.34129 5.41807 5.48949 5.49554 5.51136 5.59239 5.80910 5.87439 5.92998 6.01356 6.32186 6.42007 6.92168 7.44342 8.97749 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.004271 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.894030 B = 6554.591153 C = 6883.251217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 H 0.056 0.944 4 C 0.041 3.959 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.044 3.956 14 N -0.490 5.490 15 C 0.068 3.932 16 C -0.138 4.138 17 H 0.068 0.932 18 C -0.135 4.135 19 C -0.069 4.069 20 S -0.214 6.214 21 C -0.144 4.144 22 C -0.079 4.079 23 C -0.125 4.125 24 C -0.091 4.091 25 C -0.113 4.113 26 C 0.103 3.897 27 H 0.038 0.962 28 H 0.025 0.975 29 H 0.066 0.934 30 H -0.015 1.015 31 H -0.020 1.020 32 H 0.261 0.739 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 4.536 22.828 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 H 0.074 0.926 4 C 0.003 3.997 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.084 4.084 14 N -0.209 5.209 15 C -0.058 4.058 16 C -0.159 4.159 17 H 0.086 0.914 18 C -0.195 4.195 19 C -0.216 4.216 20 S 0.024 5.976 21 C -0.257 4.257 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.133 4.133 26 C 0.005 3.995 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.003 0.997 31 H -0.002 1.002 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.158 0.842 43 H 0.177 0.823 44 H 0.176 0.824 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.962 3.705 21.913 22.245 hybrid contribution 0.311 0.476 -0.668 0.877 sum 1.273 4.181 21.245 21.690 Atomic orbital electron populations 1.21501 0.95445 0.99693 1.00467 1.20972 0.96044 0.98373 0.92958 0.92604 1.18920 0.93914 0.94159 0.92711 1.21583 1.34333 1.08518 0.91974 0.92108 1.25943 0.95265 0.96057 1.02573 1.70120 1.40340 1.22981 1.24201 0.85586 0.78894 0.78873 0.78217 1.19039 1.21093 1.19334 1.23095 1.02717 0.94467 0.88102 1.60661 1.52694 1.07253 1.00297 1.21951 0.89793 0.92572 1.01451 1.21429 0.95820 0.97571 1.01113 0.91371 1.21800 1.00394 0.94426 1.02837 1.23554 1.02190 0.91216 1.04634 1.86414 1.38706 1.20776 1.51664 1.22249 0.97680 1.06350 0.99470 1.21486 0.99883 0.97213 0.91459 1.21617 0.93166 0.99620 1.00079 1.21597 0.98725 0.94241 0.96464 1.21440 0.97519 1.00616 0.93746 1.19425 0.92971 0.95016 0.92076 0.94249 0.95560 0.91527 0.99696 1.00191 0.93048 0.88935 0.94552 0.89354 0.90471 0.90801 0.91994 0.92174 0.86278 0.88202 0.84219 0.82348 0.82354 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 8.87 71.98 0.64 -4.02 16 2 C -0.06 -2.79 1.95 -10.79 -0.02 -2.81 16 3 H 0.06 2.38 7.03 -2.39 -0.02 2.37 16 4 C 0.04 2.24 4.45 29.85 0.13 2.37 16 5 C -0.53 -30.50 8.47 25.60 0.22 -30.29 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 9 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 C 0.04 1.70 2.50 86.30 0.22 1.92 16 14 N -0.49 -15.09 4.07 -697.80 -2.84 -17.93 16 15 C 0.07 1.78 4.54 85.72 0.39 2.17 16 16 C -0.14 -3.60 1.96 -11.77 -0.02 -3.63 16 17 H 0.07 2.34 5.02 -2.39 -0.01 2.33 16 18 C -0.13 -2.76 8.96 71.98 0.64 -2.12 16 19 C -0.07 -1.67 5.45 71.57 0.39 -1.28 16 20 S -0.21 -6.61 18.19 -56.49 -1.03 -7.64 16 21 C -0.14 -4.00 5.50 22.27 0.12 -3.88 16 22 C -0.08 -1.75 9.85 22.36 0.22 -1.53 16 23 C -0.13 -2.11 10.06 22.35 0.22 -1.88 16 24 C -0.09 -1.55 10.01 22.28 0.22 -1.33 16 25 C -0.11 -2.54 9.97 22.50 0.22 -2.32 16 26 C 0.10 2.88 4.31 37.94 0.16 3.04 16 27 H 0.04 1.66 7.11 -2.39 -0.02 1.64 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 2.36 7.63 -2.39 -0.02 2.35 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.09 3.62 2.56 -20.78 -0.05 3.56 16 34 H 0.04 1.56 7.94 -2.39 -0.02 1.54 16 35 H 0.09 2.29 7.86 -2.39 -0.02 2.27 16 36 H 0.08 1.75 7.68 -2.39 -0.02 1.73 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.22 8.01 -2.39 -0.02 1.20 16 39 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 40 H 0.12 2.62 7.98 -2.39 -0.02 2.60 16 41 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.98 353.92 3.57 -65.41 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.91 Total: 16.46 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 4.22 Total: -45.19 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.56 Total: -76.38 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.03 Total: -7.64 kcal Total: -68.98 3.57 -65.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462303348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.879 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds